mRNA_D-mesarthrocarpus_Contig10456.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10456.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig10456.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10456.5.1 vs. uniprot
Match: A0A8K1CJU5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJU5_PYTOL)

HSP 1 Score: 61.6 bits (148), Expect = 1.830e-8
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:  199 SSRVMAVATPGSYRTEKYLYAVAAGVPIVHPMWLRVCKELNCRAPHQNYLLPLGMSAPFGK 381
            +++ + +ATP S+R  K++YAVA G+P+VHP W+  C       P + Y +P G SA  GK
Sbjct:  668 NAKAVVIATPVSWRKLKFMYAVACGIPVVHPEWIHACIHAGHIVPFEGYHVPSGYSATTGK 728
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BLAST of mRNA_D-mesarthrocarpus_Contig10456.5.1 vs. uniprot
Match: A0A6H5JG92_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG92_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.850e-8
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:  181 DTSLPRSS-------RVMAVATPGSYRTEKYLYAVAAGVPIVHPMWLRVCKELNCRAPHQNYLLPLGMS 366
            D S P S+       R++AVA PGS RT ++ +AVAAG+PIVHP ++  C  +        YLLPLG S
Sbjct:  804 DASTPESTSRTQPQMRIIAVAAPGSDRTPEFHFAVAAGMPIVHPSYVEACSGMEIEVETGRYLLPLGRS 872
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BLAST of mRNA_D-mesarthrocarpus_Contig10456.5.1 vs. uniprot
Match: A0A5D6XZF7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZF7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.900e-6
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  199 SSRVMAVATPGSYRTEKYLYAVAAGVPIVHPMWLRVCKELNCRAPHQNYLLPLGMS 366
            S++ + +AT  ++R  K+ YAVA G+P+VHP WLR C +     P   Y +P G S
Sbjct:  690 SAKAVVIATAIAWRKLKFRYAVACGIPVVHPEWLRACVKAGEPVPFSGYFVPSGYS 745
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BLAST of mRNA_D-mesarthrocarpus_Contig10456.5.1 vs. uniprot
Match: K3WTV5_GLOUD (BRCT domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTV5_GLOUD)

HSP 1 Score: 53.5 bits (127), Expect = 1.080e-5
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 1 
Query:  205 RVMAVATPGSYRTEKYLYAVAAGVPIVHPMWLRVCKELNCRAPHQNYLLPLGMS 366
            + + +ATP S+R  K++YA+A G+P+VHP W+  C           Y +P G S
Sbjct:   89 KAVVIATPVSWRKLKFIYAIACGIPVVHPEWIHACVTAGKVVSFDGYFIPSGYS 142
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10456.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8K1CJU5_PYTOL1.830e-840.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6H5JG92_9PHAE1.850e-844.93BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5D6XZF7_9STRA1.900e-641.07Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WTV5_GLOUD1.080e-537.04BRCT domain-containing protein n=1 Tax=Globisporan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10456contigD-mesarthrocarpus_Contig10456:2734..3125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FW83
PFAMsBRCT,BRCT_2
Model size394
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.18e-11
EggNOG OGs2CKM1@1|root,2S28W@2759|Eukaryota
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-13_004450.2
DescriptionBRCA1 C Terminus (BRCT) domain
Cds size390
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.779445-CDS-D-mesarthrocarpus_Contig10456:2735..31251680789183.779445-CDS-D-mesarthrocarpus_Contig10456:2735..3125Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10456 2736..3125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10456.5.1prot_D-mesarthrocarpus_Contig10456.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10456 2736..3125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10456.5.1

>prot_D-mesarthrocarpus_Contig10456.5.1 ID=prot_D-mesarthrocarpus_Contig10456.5.1|Name=mRNA_D-mesarthrocarpus_Contig10456.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
SILVTGCSGKSLRGEIRGRDIPAEIKALGGEIPTSEPRLWPGECPEDMGP
GGQRGTGVPGDTSLPRSSRVMAVATPGSYRTEKYLYAVAAGVPIVHPMWL
RVCKELNCRAPHQNYLLPLGMSAPFGKLVM
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mRNA from alignment at D-mesarthrocarpus_Contig10456:2734..3125-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10456.5.1 ID=mRNA_D-mesarthrocarpus_Contig10456.5.1|Name=mRNA_D-mesarthrocarpus_Contig10456.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=392bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10456:2734..3125- (Discosporangium mesarthrocarpum MT17_79)
AGCATCCTGGTGACAGGCTGCAGCGGCAAGAGCCTAAGAGGGGAAATTCG
GGGGAGGGACATACCTGCTGAGATCAAGGCCCTAGGGGGAGAGATCCCCA
CCTCAGAGCCCAGGCTATGGCCAGGTGAGTGCCCTGAGGACATGGGGCCC
GGGGGCCAGCGGGGCACAGGGGTACCAGGGGATACGTCTCTTCCCCGCAG
CAGCAGGGTTATGGCGGTGGCCACACCAGGCTCGTACCGCACAGAGAAGT
ACCTCTATGCTGTGGCGGCGGGGGTCCCGATTGTACACCCAATGTGGCTA
CGCGTATGTAAGGAGCTCAACTGCCGAGCCCCGCACCAGAATTACCTCCT
CCCCCTGGGGATGTCTGCACCCTTTGGTAAGTTGGTCATGCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10456:2734..3125-

>mRNA_D-mesarthrocarpus_Contig10456.5.1 ID=mRNA_D-mesarthrocarpus_Contig10456.5.1|Name=mRNA_D-mesarthrocarpus_Contig10456.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10456:2734..3125- (Discosporangium mesarthrocarpum MT17_79)
AGCATCCTGGTGACAGGCTGCAGCGGCAAGAGCCTAAGAGGGGAAATTCG
GGGGAGGGACATACCTGCTGAGATCAAGGCCCTAGGGGGAGAGATCCCCA
CCTCAGAGCCCAGGCTATGGCCAGGTGAGTGCCCTGAGGACATGGGGCCC
GGGGGCCAGCGGGGCACAGGGGTACCAGGGGATACGTCTCTTCCCCGCAG
CAGCAGGGTTATGGCGGTGGCCACACCAGGCTCGTACCGCACAGAGAAGT
ACCTCTATGCTGTGGCGGCGGGGGTCCCGATTGTACACCCAATGTGGCTA
CGCGTATGTAAGGAGCTCAACTGCCGAGCCCCGCACCAGAATTACCTCCT
CCCCCTGGGGATGTCTGCACCCTTTGGTAAGTTGGTCATG
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