mRNA_D-mesarthrocarpus_Contig10450.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10450.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10450.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10450.2.1 vs. uniprot
Match: A0A6H5KE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE27_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.540e-35
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:  148 LINTVQRYPSGLTEAVVMAELESMWRQNAKGVHAPGKLQGYLDAQYAPLSDVVEVVVQRCSDELVNRGGGGTTKAGKGNKAVVCMDMYLHQKFKPCRGFVREAGHDLVAPGRKLRLVG 501
            LI TV+RYPSGLTEAV++AELE +WR++ +G   PGKLQ YLDAQYAPLSDV++  V R SD+LV      +      N +   +DMYLHQ FKPC  + +  GHDL+APGRK+RL G
Sbjct:   17 LIETVRRYPSGLTEAVILAELELLWRRDVRGAFVPGKLQAYLDAQYAPLSDVIQACVVRHSDQLVTLVEDHSCSVSS-NLSPAKVDMYLHQNFKPCLRYAQGVGHDLLAPGRKVRLTG 133
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BLAST of mRNA_D-mesarthrocarpus_Contig10450.2.1 vs. uniprot
Match: D7FQ83_ECTSI (CDC24_OB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ83_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.840e-13
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   13 DWVEMHGERLRSLLQTLVSLDTGPEGNSRSGEGSSVVPWAWVCKALINTVQRYPSGLTEAVVMAELE 213
            DWV+ H +RLRS LQ +V  D+G   +S +GE    VPW+W C+ LI TV+RYPSGLTEAV++AELE
Sbjct:    2 DWVQEHCDRLRSKLQGVV--DSG--ASSGAGELGLRVPWSWTCRTLIETVRRYPSGLTEAVILAELE 64
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BLAST of mRNA_D-mesarthrocarpus_Contig10450.2.1 vs. uniprot
Match: L8GLP9_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GLP9_ACACA)

HSP 1 Score: 60.1 bits (144), Expect = 1.780e-7
Identity = 47/176 (26.70%), Postives = 81/176 (46.02%), Query Frame = 1 
Query:   13 DWVEMHGERLRSLLQTLVSLDTGPEGNSRSGEGSSV------------VPWAWVCKALINTVQRYPSGLTEAVVMAELESMWRQNA-KGVHAPGKLQGYLDAQYAPLSDVVEVVVQRCSDELVNRGGGGTTKAGKGNKAVVCMDMYLHQKFKPCRGFVREAGHDLVAPGRKLRLVG 501
            D++ + GE +R  L    + D    G + S   S+V            VPW WVC  L++ ++RYPSG+T A+V+++L+++W + + +  +   +    +D   A     +  +++    E   +  G  T AG+  +  +  + YLHQKF P           L    R LRL G
Sbjct:    2 DFLRLVGE-VRDKLVVRTAKDDDRRGFTSSPPCSAVAASQNVSNALDRVPWNWVCLNLVSLLERYPSGVTMAIVLSDLQNLWDETSIEWRYGISRRLESIDKIKATKKVGLTAILEASIAEA-KQTPGTQTSAGRAQQEKI--EWYLHQKFYPL------VAKGLFTERRTLRLTG 167
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BLAST of mRNA_D-mesarthrocarpus_Contig10450.2.1 vs. uniprot
Match: UPI00106BFA99 (uncharacterized protein LOC114525665 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BFA99)

HSP 1 Score: 58.2 bits (139), Expect = 8.140e-7
Identity = 41/145 (28.28%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:   85 EGNSRSGEGSSVVPWAWVCKALINTVQRYPSGLTEAVVMAELESMWRQNAK-----GVHAPGKLQGYLDAQYAPLSDVVEVVVQRCSD-ELVNRGGGGTTKAGKGNKAVVCMDMYLHQKFKPCRGFVREAGHDLVAPGRKLRLVG 501
            E   R G  +S+ PW W    L+  + RYP+G+T+A++++ELE  WR+  K     G+++   L+  + +++     V EV ++   + E          +    ++    M+MYLHQK     G V +    ++A G KLR  G
Sbjct:   12 EFQQRLGTTTSI-PWGWFFTKLVTLLSRYPTGVTKAIMLSELECSWRKIEKLQAKGGMNSADSLRSIVLSRHLSPQAVFEVFLKEVKNVEATQTRVAVLMEHETSSEHSFTMEMYLHQKLY---GEVEQ----IMANGYKLRFTG 148
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BLAST of mRNA_D-mesarthrocarpus_Contig10450.2.1 vs. uniprot
Match: A0A0L0HFJ5_SPIPD (CDC24_OB1 domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HFJ5_SPIPD)

HSP 1 Score: 55.5 bits (132), Expect = 1.050e-6
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:   43 RSLLQTLVSLDTGPEGNSRSGEGSSVVPWAWVCKALINTVQRYPSGLTEAVVMAELESMWRQNA----KGVHAPGK-LQGYLDAQYAPLSDVVEVV 315
            R   + L  LD     +    + S VVPW+WV   L+  + +YPSGLTEA+V AELE  W + +    +GV    + L  ++D +  P   + EVV
Sbjct:   19 RETRRQLQRLDQKDNVSKNGEQDSDVVPWSWVFTRLLVLLGQYPSGLTEAIVNAELEVQWDECSAEVRRGVSKRFETLDAFVDGKAVPPEAMFEVV 114
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BLAST of mRNA_D-mesarthrocarpus_Contig10450.2.1 vs. uniprot
Match: A0A507ECL1_9FUNG (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507ECL1_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 9.430e-6
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:   43 RSLLQTLVSLDTGPEGNSRSGEGSSVVPWAWVCKALINTVQRYPSGLTEAVVMAELESMW 222
            R   + L  LD     +    E S VVPW+WV   L+  + +YPSGLTEA+V AELE  W
Sbjct:   21 RETRRQLQRLDQKENVSKNGEEDSDVVPWSWVFTRLLVLLGQYPSGLTEAIVNAELEMQW 80
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10450.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KE27_9PHAE4.540e-3556.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ83_ECTSI1.840e-1358.21CDC24_OB1 domain-containing protein n=1 Tax=Ectoca... [more]
L8GLP9_ACACA1.780e-726.70Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
UPI00106BFA998.140e-728.28uncharacterized protein LOC114525665 n=1 Tax=Dendr... [more]
A0A0L0HFJ5_SPIPD1.050e-635.42CDC24_OB1 domain-containing protein n=1 Tax=Spizel... [more]
A0A507ECL1_9FUNG9.430e-645.00Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10450contigD-mesarthrocarpus_Contig10450:871..2279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_08515T0
PFAMsCDC24_OB1,CDC24_OB2,CDC24_OB3
Model size504
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.48e-08
EggNOG OGs2CGBR@1|root,2RDCJ@2759|Eukaryota,3QE52@4776|Peronosporales
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.2982795-CDS-D-mesarthrocarpus_Contig10450:870..10261680789183.2982795-CDS-D-mesarthrocarpus_Contig10450:870..1026Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10450 871..1026 +
1680789183.3079193-CDS-D-mesarthrocarpus_Contig10450:1144..12091680789183.3079193-CDS-D-mesarthrocarpus_Contig10450:1144..1209Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10450 1145..1209 +
1680789183.3185806-CDS-D-mesarthrocarpus_Contig10450:1381..15051680789183.3185806-CDS-D-mesarthrocarpus_Contig10450:1381..1505Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10450 1382..1505 +
1680789183.3271456-CDS-D-mesarthrocarpus_Contig10450:2120..22791680789183.3271456-CDS-D-mesarthrocarpus_Contig10450:2120..2279Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10450 2121..2279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10450.2.1prot_D-mesarthrocarpus_Contig10450.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10450 871..2279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10450.2.1

>prot_D-mesarthrocarpus_Contig10450.2.1 ID=prot_D-mesarthrocarpus_Contig10450.2.1|Name=mRNA_D-mesarthrocarpus_Contig10450.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=168bp
MHNADWVEMHGERLRSLLQTLVSLDTGPEGNSRSGEGSSVVPWAWVCKAL
INTVQRYPSGLTEAVVMAELESMWRQNAKGVHAPGKLQGYLDAQYAPLSD
VVEVVVQRCSDELVNRGGGGTTKAGKGNKAVVCMDMYLHQKFKPCRGFVR
EAGHDLVAPGRKLRLVG*
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mRNA from alignment at D-mesarthrocarpus_Contig10450:871..2279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10450.2.1 ID=mRNA_D-mesarthrocarpus_Contig10450.2.1|Name=mRNA_D-mesarthrocarpus_Contig10450.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1409bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10450:871..2279+ (Discosporangium mesarthrocarpum MT17_79)
ATGCATAATGCCGACTGGGTCGAGATGCACGGGGAACGCTTGAGGTCCTT
ACTCCAGACACTGGTCTCCCTCGACACAGGGCCAGAGGGTAATTCGCGTT
CCGGCGAGGGTTCGAGCGTCGTACCGTGGGCCTGGGTATGTAAGGCCTTG
ATAAATGTGAGTTGGCTCTGTAATGGAAGAGGATGGCGAGGATTAGAGCG
AGCGGAGTGCAATACGACAGTTGGTCTCAGCACACCGTCTATGAAACGTA
GCTGACCCATCATCCCTCTGCCAGACGGTTCAACGATACCCCTCAGGGCT
CACTGAGGCTGTGGTAATGGCGGAGCTGGAATCTATGTGGTGAGTGGCTA
TACGGGACCCGGTTGCAACTACTATCTGCGCCAACACGTATGGACGGACT
TCATATGCAAGGGTGATATATGTGTGTGCATTTTTTTTTTGATAACTCCT
CTGCACTCGTCGCGTTGTCATATCCACCCTCGTGTCCTTGCTGCTCACTG
CTCCAATCTAGGCGGCAAAATGCAAAGGGAGTGCATGCCCCGGGAAAGCT
GCAGGGATACCTGGATGCCCAGTATGCCCCCCTTTCCGACGTGGTTGAGG
TGGTGGTGCAGAGGTGCTCAGACGAGCTGGTAAATGTCGAACGCCCCCCC
CGATGGCGGCCCAAGTCCACCCCTTTGCTGTCCAACATGCACCAAACTCC
TTCTTGCCTCCCTCTCTGTTCCCTTGTTTAAGGGCAAAATATTTCACTTA
GCGATTTTCTACCGAGTGTGCTCAATGCCGTGTACCAGACGTGATGGGTT
GGCATTTGTAGTTGAGGAAATAGTTTAGAACGTGTATATATGTCTATGCA
TATGATATATCTGTCTATATATATGGCATGTATGTTTACACATGTGACAT
GTTGCTGTGTGCTGTTAATGTCTCTCTTAATTTTCCACAAAGTGATACAC
TTATTCCCAACGAAGGTCCAAACCCTGGGGCATGTTGACTCACCCTCATC
CTAGACCAGTTTCTATTCAATCCCGCCATCCTAACCCTAACCCCAACCCT
GACCCATGCATAATGCAGTACAGTATCTCCAATCCTGATCATGATTCGAG
ATCTGAAGTTGAGCCATGACCTGACCCACCAATTCGCTGTGCTGAAGATA
CGCCGAACAGAAGAAAAAGACATAGCAAACCCCTTCCCCCTCCCCCCCCC
TCCCCCCTGTCAATCAGGTGACCTTAGGTGAACAGCAGCCGCAGCAGGAG
CGAGGTGGGGGGGGGACCACCAAGGCAGGCAAGGGCAACAAGGCAGTGGT
GTGCATGGACATGTACCTGCATCAAAAGTTTAAGCCATGCCGAGGCTTTG
TAAGGGAGGCAGGGCATGACCTTGTGGCCCCTGGGCGAAAACTCCGACTC
GTGGGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10450:871..2279+

>mRNA_D-mesarthrocarpus_Contig10450.2.1 ID=mRNA_D-mesarthrocarpus_Contig10450.2.1|Name=mRNA_D-mesarthrocarpus_Contig10450.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=504bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10450:871..2279+ (Discosporangium mesarthrocarpum MT17_79)
ATGCATAATGCCGACTGGGTCGAGATGCACGGGGAACGCTTGAGGTCCTT
ACTCCAGACACTGGTCTCCCTCGACACAGGGCCAGAGGGTAATTCGCGTT
CCGGCGAGGGTTCGAGCGTCGTACCGTGGGCCTGGGTATGTAAGGCCTTG
ATAAATACGGTTCAACGATACCCCTCAGGGCTCACTGAGGCTGTGGTAAT
GGCGGAGCTGGAATCTATGTGGCGGCAAAATGCAAAGGGAGTGCATGCCC
CGGGAAAGCTGCAGGGATACCTGGATGCCCAGTATGCCCCCCTTTCCGAC
GTGGTTGAGGTGGTGGTGCAGAGGTGCTCAGACGAGCTGGTAAATCGAGG
TGGGGGGGGGACCACCAAGGCAGGCAAGGGCAACAAGGCAGTGGTGTGCA
TGGACATGTACCTGCATCAAAAGTTTAAGCCATGCCGAGGCTTTGTAAGG
GAGGCAGGGCATGACCTTGTGGCCCCTGGGCGAAAACTCCGACTCGTGGG
GTGA
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