mRNA_D-mesarthrocarpus_Contig1045.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1045.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig1045.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1045.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1045contigD-mesarthrocarpus_Contig1045:20085..20687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size603
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.216345-UTR-D-mesarthrocarpus_Contig1045:20084..202361680789183.216345-UTR-D-mesarthrocarpus_Contig1045:20084..20236Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1045 20085..20236 -
1680789183.236817-UTR-D-mesarthrocarpus_Contig1045:20626..206871680789183.236817-UTR-D-mesarthrocarpus_Contig1045:20626..20687Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1045 20627..20687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.2275295-CDS-D-mesarthrocarpus_Contig1045:20236..206261680789183.2275295-CDS-D-mesarthrocarpus_Contig1045:20236..20626Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1045 20237..20626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1045.6.1prot_D-mesarthrocarpus_Contig1045.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1045 20237..20626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1045.6.1

>prot_D-mesarthrocarpus_Contig1045.6.1 ID=prot_D-mesarthrocarpus_Contig1045.6.1|Name=mRNA_D-mesarthrocarpus_Contig1045.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
MHLSGWGNSSRSSTPVRGRGDSAELLTPSLSPQTQTQTQTPLPTEGGKKQ
AAGERSVPVARPRRKPSLGGGEGIRRGMELYTGSENRKRGGVMSGGSKQV
PPPLNEGRGGGRSDEFEHVVRGGDSCSLM*
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mRNA from alignment at D-mesarthrocarpus_Contig1045:20085..20687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1045.6.1 ID=mRNA_D-mesarthrocarpus_Contig1045.6.1|Name=mRNA_D-mesarthrocarpus_Contig1045.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=603bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1045:20085..20687- (Discosporangium mesarthrocarpum MT17_79)
TGTCTCCAGCAGCAGCAACGGTCCTCTGACGGAGGATACAATACCAGCCT
CGCCGTTGAACATGCACCTCTCGGGCTGGGGAAACTCGTCTCGATCCTCG
ACCCCCGTGAGGGGGCGTGGGGATTCAGCGGAGCTCCTCACGCCCAGCCT
CTCCCCCCAGACCCAGACCCAGACCCAGACACCTCTGCCAACAGAGGGGG
GCAAAAAACAAGCTGCAGGGGAGAGGTCTGTGCCTGTGGCGAGGCCCAGA
AGAAAGCCGTCGCTGGGGGGAGGAGAAGGGATTAGAAGGGGGATGGAATT
GTACACTGGGTCGGAGAACAGGAAGAGGGGAGGGGTGATGTCTGGGGGTA
GTAAACAGGTGCCCCCCCCCTTGAATGAGGGCCGGGGGGGTGGTAGGAGC
GATGAGTTTGAGCATGTCGTCCGTGGCGGCGACAGTTGCTCTTTGATGTG
ATTATTCGATGCCCTGCTCGTCCTCCTCTGCTCCGGAGTGACGAGGAGGA
TTGGATGGGGAAGTAGGTGGAGGGGAAACAGACGGGGAAAATAGGCCTCT
GGGCTTTCTTGGTCTTGTTCGTGCTGCCCCTTTGTTTTCAAAGTACGTCC
CCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1045:20085..20687-

>mRNA_D-mesarthrocarpus_Contig1045.6.1 ID=mRNA_D-mesarthrocarpus_Contig1045.6.1|Name=mRNA_D-mesarthrocarpus_Contig1045.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1045:20085..20687- (Discosporangium mesarthrocarpum MT17_79)
ATGCACCTCTCGGGCTGGGGAAACTCGTCTCGATCCTCGACCCCCGTGAG
GGGGCGTGGGGATTCAGCGGAGCTCCTCACGCCCAGCCTCTCCCCCCAGA
CCCAGACCCAGACCCAGACACCTCTGCCAACAGAGGGGGGCAAAAAACAA
GCTGCAGGGGAGAGGTCTGTGCCTGTGGCGAGGCCCAGAAGAAAGCCGTC
GCTGGGGGGAGGAGAAGGGATTAGAAGGGGGATGGAATTGTACACTGGGT
CGGAGAACAGGAAGAGGGGAGGGGTGATGTCTGGGGGTAGTAAACAGGTG
CCCCCCCCCTTGAATGAGGGCCGGGGGGGTGGTAGGAGCGATGAGTTTGA
GCATGTCGTCCGTGGCGGCGACAGTTGCTCTTTGATGTGA
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