mRNA_D-mesarthrocarpus_Contig1045.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1045.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig1045.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1045.2.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 5.860e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  124 STLYPAPQAHHRVRGVGGGEVTGLSEDPDFFPPIPLSE 237
            S++YPAPQ  HR+R    G+  GLS+DP+FFPPIPLSE
Sbjct:  221 SSVYPAPQPLHRIRS-SAGDGMGLSQDPNFFPPIPLSE 257
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BLAST of mRNA_D-mesarthrocarpus_Contig1045.2.1 vs. uniprot
Match: D8LFY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY5_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 7.710e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  124 STLYPAPQAHHRVRGVGGGEVTGLSEDPDFFPPIPLSE 237
            S++YPAPQ  HR+R   G +  GLS+DP+FFPPIPLSE
Sbjct:  223 SSVYPAPQPLHRIRS-SGDDGMGLSQDPNFFPPIPLSE 259
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1045.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K175_9PHAE5.860e-663.16CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LFY5_ECTSI7.710e-663.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1045contigD-mesarthrocarpus_Contig1045:1013..1282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.2701676-CDS-D-mesarthrocarpus_Contig1045:1012..12821680789183.2701676-CDS-D-mesarthrocarpus_Contig1045:1012..1282Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1045 1013..1282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1045.2.1prot_D-mesarthrocarpus_Contig1045.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1045 1013..1282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1045.2.1

>prot_D-mesarthrocarpus_Contig1045.2.1 ID=prot_D-mesarthrocarpus_Contig1045.2.1|Name=mRNA_D-mesarthrocarpus_Contig1045.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=90bp
SKSDSETRPRGGSRAVQMTPTNGAGQGRGRGGGAGAVEVTTSTLYPAPQA
HHRVRGVGGGEVTGLSEDPDFFPPIPLSEGEGEKEAAAAV
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mRNA from alignment at D-mesarthrocarpus_Contig1045:1013..1282-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1045.2.1 ID=mRNA_D-mesarthrocarpus_Contig1045.2.1|Name=mRNA_D-mesarthrocarpus_Contig1045.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1045:1013..1282- (Discosporangium mesarthrocarpum MT17_79)
TCCAAGTCAGACTCGGAAACCCGGCCCCGGGGCGGCTCCAGGGCAGTCCA
GATGACCCCAACGAATGGGGCTGGGCAGGGCAGAGGCAGGGGTGGTGGTG
CAGGTGCTGTGGAGGTCACCACATCCACCCTCTACCCAGCCCCGCAGGCA
CATCACCGCGTCCGGGGGGTGGGAGGGGGCGAGGTGACAGGCCTCTCGGA
AGATCCAGATTTTTTCCCGCCAATCCCCCTGTCGGAGGGGGAGGGGGAGA
AGGAGGCAGCGGCGGCGGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1045:1013..1282-

>mRNA_D-mesarthrocarpus_Contig1045.2.1 ID=mRNA_D-mesarthrocarpus_Contig1045.2.1|Name=mRNA_D-mesarthrocarpus_Contig1045.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1045:1013..1282- (Discosporangium mesarthrocarpum MT17_79)
TCCAAGTCAGACTCGGAAACCCGGCCCCGGGGCGGCTCCAGGGCAGTCCA
GATGACCCCAACGAATGGGGCTGGGCAGGGCAGAGGCAGGGGTGGTGGTG
CAGGTGCTGTGGAGGTCACCACATCCACCCTCTACCCAGCCCCGCAGGCA
CATCACCGCGTCCGGGGGGTGGGAGGGGGCGAGGTGACAGGCCTCTCGGA
AGATCCAGATTTTTTCCCGCCAATCCCCCTGTCGGAGGGGGAGGGGGAGA
AGGAGGCAGCGGCGGCGGTG
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