mRNA_D-mesarthrocarpus_Contig10445.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10445.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10445.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10445contigD-mesarthrocarpus_Contig10445:223..1560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size518
Hectar predicted targeting categoryother localisation
Exons2
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.8169982-CDS-D-mesarthrocarpus_Contig10445:223..5821680789182.8169982-CDS-D-mesarthrocarpus_Contig10445:223..582Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10445 224..582 -
1680789182.826955-CDS-D-mesarthrocarpus_Contig10445:1403..15601680789182.826955-CDS-D-mesarthrocarpus_Contig10445:1403..1560Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10445 1404..1560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10445.1.1prot_D-mesarthrocarpus_Contig10445.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10445 224..1560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10445.1.1

>prot_D-mesarthrocarpus_Contig10445.1.1 ID=prot_D-mesarthrocarpus_Contig10445.1.1|Name=mRNA_D-mesarthrocarpus_Contig10445.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=172bp
GDGAGFRGRRRGGRHPADIFTNGCGPMLTGEAHRELREGGRHRDGAVCAL
ESGHPRSQGLDPPWGSVGAQRQEQRRRQQDPGHAGKLASPRCAGQGCRPG
AVPRRHGCGRQWQRQQRRQHCPCLRGTWGGPGWDRGGAGLGRGPGIVRPG
QGAPGAKGGGCGGGSNGPGAGA
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10445:223..1560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10445.1.1 ID=mRNA_D-mesarthrocarpus_Contig10445.1.1|Name=mRNA_D-mesarthrocarpus_Contig10445.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1338bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10445:223..1560- (Discosporangium mesarthrocarpum MT17_79)
GGGGACGGGGCTGGGTTCAGGGGCAGGAGGAGGGGGGGCAGGCATCCGGC
GGACATATTCACCAACGGATGTGGTCCTATGCTCACTGGAGAGGCTCACA
GAGAGCTCCGGGAAGGAGGAAGACATCGAGATGGTGCTGTCTGTGCTCTG
GAGTCAGGTGCGGTGTGTTGTGGCTTAGGCACTTGCGTTTCGCGGGTAGA
CCTGGGGCTAGGGTTAATAGGTTGGGCCTGCTGTATGCGTATGCTCCGCA
TGCTGTGTGGTGTAATGCAGCTCAGGCATTAGGCCATTTGTACGACATAT
ACCGCATACCTGGAGCTACTGTGCCAATCACAATGAGAATATGTGTAAAT
TAGGGCTAGGGTTGGTGTGTGTGTGTGTGTCTGTGTGTGTATAACTGCTG
TACCATGCATGGTGCACGAGCATGCCCTGGAGAAGCTAACCAATAGTAGT
AGGGCGGTGTTGAATGCCCCCAAGTACTTGGTAGTGAGCACCGAAAAATC
ATTTGGAAGTAAGTATCTACCTTCTCGTCCTGTGTTTTTGGAGATTGAAT
AGCTTTCTTTGTGAGGCAGAGGGGGGGGTAAGGGGTTACTGGGATCTGTA
GAAAGCAGAGGGCGGGGGATGGGGGTAGCCAGTTTCCAGTAAAGAGCAGG
TCAGGTTTCGGGGTAATGTTTAGGGTTAGGGTTGGAGCAATTTCCTGGCA
CCAGATCCACCGAGAGTGGCGGAACGATTTCCTTTTGAGCACCGCTGTGA
GTCGGCTGATCGGTCACTTGCACAGAGCAAGATTTCACCACCTTACCCCT
TGTTCCCTACCATAGCTAGGCACACTTTCGACGCATGGACGTGTAACCAC
TCCCACACACCACACCCTTCTTCCCCCTCTCCGTCACGCACAGAAGACAT
CCCAGGCCAGCACACACAAACACCAAACAAGTGCCCGCCCTCAACCCGAC
TGACCGACCTTCCCCCCCCTGTCCCCAGGTCATCCTCGATCTCAGGGGCT
CGACCCACCCTGGGGCAGCGTTGGCGCCCAACGGCAAGAGCAACGCCGGC
GGCAGCAGGACCCGGGCCACGCCGGTAAACTGGCCAGTCCTCGCTGCGCT
GGCCAGGGATGCCGCCCAGGTGCTGTGCCTAGAAGACATGGTTGCGGACG
ACAGTGGCAGCGACAACAACGACGGCAACACTGCCCTTGCCTCAGGGGAA
CCTGGGGGGGGCCGGGGTGGGATCGAGGAGGAGCTGGCCTGGGCCGCGGG
CCTGGCATCGTTCGCCCTGGCCAAGGTGCTCCCGGGGCCAAGGGCGGCGG
TTGCGGTGGCGGCAGCAATGGCCCTGGGGCAGGGGCAC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10445:223..1560-

>mRNA_D-mesarthrocarpus_Contig10445.1.1 ID=mRNA_D-mesarthrocarpus_Contig10445.1.1|Name=mRNA_D-mesarthrocarpus_Contig10445.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=516bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10445:223..1560- (Discosporangium mesarthrocarpum MT17_79)
GGGGACGGGGCTGGGTTCAGGGGCAGGAGGAGGGGGGGCAGGCATCCGGC
GGACATATTCACCAACGGATGTGGTCCTATGCTCACTGGAGAGGCTCACA
GAGAGCTCCGGGAAGGAGGAAGACATCGAGATGGTGCTGTCTGTGCTCTG
GAGTCAGGTCATCCTCGATCTCAGGGGCTCGACCCACCCTGGGGCAGCGT
TGGCGCCCAACGGCAAGAGCAACGCCGGCGGCAGCAGGACCCGGGCCACG
CCGGTAAACTGGCCAGTCCTCGCTGCGCTGGCCAGGGATGCCGCCCAGGT
GCTGTGCCTAGAAGACATGGTTGCGGACGACAGTGGCAGCGACAACAACG
ACGGCAACACTGCCCTTGCCTCAGGGGAACCTGGGGGGGGCCGGGGTGGG
ATCGAGGAGGAGCTGGCCTGGGCCGCGGGCCTGGCATCGTTCGCCCTGGC
CAAGGTGCTCCCGGGGCCAAGGGCGGCGGTTGCGGTGGCGGCAGCAATGG
CCCTGGGGCAGGGGCA
back to top