mRNA_D-mesarthrocarpus_Contig10443.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 8.610e-13 Identity = 57/196 (29.08%), Postives = 89/196 (45.41%), Query Frame = 1
Query: 10 YTCDSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSM----------------KVAAERGHS----FTTDASAVKHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDINLFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSI 537
Y D+GA+ HM + G + + + A G+ ++I G+G +++ +G L+ L+ VA+ P L YNL S+ ++ ERG F + F T+ + +I+ G A + T VDIN FHCA+GHSH V L TA + + LVG+L C GC+ K +
Sbjct: 381 YVADTGATTHMFANTDGFVHYEDCDRRVRVAAGETFSIVGYGDVTVTLSSRDGTTDLL-LKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFR--THTEHACAAIAPGNAKAPSXKASSTPVDINDFHCAYGHSHEVLLRTTAKQ----QGTTLVGELRECLGCSTAKGL 569
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.450e-12 Identity = 61/204 (29.90%), Postives = 90/204 (44.12%), Query Frame = 1
Query: 127 GFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHSF---------TTDASAV-----KHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDINLFHCAFGHSHGVALWKTA----TRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLS-GRKPTSLGGSYYLMVVCDDFSTYT 681
G+G ++LV ++G P+ L + A YNL S+ AE GH++ TT A K Y+ KP + A ++ T +N +H A GH+H L TA +L DG +P C GC++ K K V T R V V++DL K S+GGS+Y +++ DDFS +T
Sbjct: 32 GYGDVTLVLQTEDGGVPVPVL-NAAQVREAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKEATPTYLNEYHLANGHAHETMLRITAEQQGVQLTDGPLLP-------CLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWT 227
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A5N6P2G7_9ASTR (Protein DETOXIFICATION n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P2G7_9ASTR) HSP 1 Score: 69.3 bits (168), Expect = 5.790e-10 Identity = 69/235 (29.36%), Postives = 103/235 (43.83%), Query Frame = 1
Query: 19 DSGASEHMTFSLKGMFDLDPVSKPMITATGDE--YAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHS--FTTDASAVKHK--AFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDIN----LFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSG-RKPTSLGGSYYLMVVCDDFSTYTWVY 690
DSG S HMT S + LD K + GD+ +E GT+ + D+ L+ V YAP L YNL S+ ++G+S F +K+K M L A+ T G P + N L+H +GH + L K + K + +P + + C GC +GK S + V L + DL G + SLGGSYY +++ DD++ WV+
Sbjct: 558 DSGCSNHMTGSKESFTVLDETFKLEVNL-GDKKKLGVESRGTVKIPLKNDK----YKLLDDVYYAPRLEYNLLSVGQLMKKGYSLMFEDGKCTIKNKMSGINLMAINVSNNNMFLLDASQDTGGDEPSPLKNSNHTSKLWHLRYGHLNYQGL-KQLSDKKMVQGLPPISLSDPCEGCIMGKQHKLPFQSKSWKATVKL-GLIHADLCGPMQVPSLGGSYYDLLLIDDYTRMNWVH 785
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: B1PJ44_THAPS (Gag-pol polyprotein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B1PJ44_THAPS) HSP 1 Score: 62.0 bits (149), Expect = 1.810e-7 Identity = 61/238 (25.63%), Postives = 96/238 (40.34%), Query Frame = 1
Query: 19 DSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHSFTTDASAVKHKAFMAMTYRKKPLQSISLGAAVLTP-GHSPGTTV---------------DINLFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSGRKPTSLGGSYYLMVVCDDFSTYTW 684
D+G+S H+ G++D+ P+S+ + G G L++V +G + L V Y + + S+ T D KH+ +TY + I T G PG V IN +H GH + V TA + +VG ++ C CA+GK+ K VP R + R+F+D+S K S+GGS ++V DD + W
Sbjct: 390 DTGSSCHIVNDDTGLYDITPISEVVGGIGGQSIRATMMGRLNVVIKQADGTQVKRVLYPVKYCLGATERIWSLNQEVNDARLSTDD----KHR--YVLTYNDEQQTKIVFDRRAKTNNGWVPGVEVIQDTAEIGMFTKQTKTINEYHEELGHPNMVVTRSTAKARHEN----VVGPIQQCEDCAVGKAHQKRVPKQPVARAKNPGERLFLDISHPKQQSIGGSNDWILVADDATDNCW 617
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A2U1QM86_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QM86_ARTAN) HSP 1 Score: 57.4 bits (137), Expect = 6.530e-6 Identity = 58/235 (24.68%), Postives = 98/235 (41.70%), Query Frame = 1
Query: 4 VAYTCDSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSM-KVAAERGHSFTTDASAVKHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDIN----LFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSGR-KPTSLGGSYYLMVVCDDFSTYTWVY 690
VA+ DSGA++H++ +LK M +L P++ + + T+ + V V + L +V Y P +YN+ S+ K+ S T AS + + ++V TP P T + + L+H GH L R+K + C+ C L K + S +++ SLF + +D+ G K T++ Y + + DD S TW Y
Sbjct: 418 VAWIIDSGATDHISITLKIMHNLHHCHTPILVS------LPNGQTVKVTIVGSVKVNEHITLHNVFYIPTFTYNIISVSKLLLGTTISLTLTASLCIFQDQNKRIALGNLCDGLYFLSSVSTPSAKPSTILHCSSKTQLWHSRLGHPSIPVL----KRIKSLSSFISNNSVTHCNICHLAKQVALPFQS-SNSHATSLFDLIHMDVWGPYKHTTINNCKYFLTIVDDHSRATWTY 641
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A1W7R6H7_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6H7_AEDAL) HSP 1 Score: 57.0 bits (136), Expect = 8.600e-6 Identity = 64/230 (27.83%), Postives = 97/230 (42.17%), Query Frame = 1
Query: 19 DSGASEHMTFSLKGMFDLDPVSKPMIT-ATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHS--FTTDASAV-KHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDINLFHCAFGHSHGVALWKTATR-LKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSG-RKPTSLGGSYYLMVVCDDFSTYTWVY 690
DSGAS HM + +S +T A G+E A+ G G+ +L+ + D VKL V + P L +L S+ E+G FT + + K+ +A + + L ++L L + I+++H GH A+ K L G I E C C GK P T + + V D+ G K + GG Y M + DDF+ +T VY
Sbjct: 278 DSGASCHMCGEQDFFENYAELSGMTVTLADGNEAAVAGKGSCTLMCLDDVHNHHEVKLTDVLHVPSLDAHLVSVGRFTEKGADVLFTQNTCKIMKNGKVVATADKSEGLYRLNLLRNKLLKAETKHPKNCIHMWHKKLGHRDPDAIQKLVQEDLATGIRIEKCAVDEDCECCLEGKLSRLPFPKQTGEQSKKMLDLVHTDVCGPMKTITPGGIRYFMTMIDDFTRFTKVY 507 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10443.1.1 >prot_D-mesarthrocarpus_Contig10443.1.1 ID=prot_D-mesarthrocarpus_Contig10443.1.1|Name=mRNA_D-mesarthrocarpus_Contig10443.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=230bp MVAYTCDSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLVback to top mRNA from alignment at D-mesarthrocarpus_Contig10443:967..1688- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10443.1.1 ID=mRNA_D-mesarthrocarpus_Contig10443.1.1|Name=mRNA_D-mesarthrocarpus_Contig10443.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=722bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10443:967..1688- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10443:967..1688- >mRNA_D-mesarthrocarpus_Contig10443.1.1 ID=mRNA_D-mesarthrocarpus_Contig10443.1.1|Name=mRNA_D-mesarthrocarpus_Contig10443.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=690bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10443:967..1688- (Discosporangium mesarthrocarpum MT17_79)back to top |