mRNA_D-mesarthrocarpus_Contig10443.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10443.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10443.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 8.610e-13
Identity = 57/196 (29.08%), Postives = 89/196 (45.41%), Query Frame = 1
Query:   10 YTCDSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSM----------------KVAAERGHS----FTTDASAVKHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDINLFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSI 537
            Y  D+GA+ HM  +  G    +   + +  A G+ ++I G+G +++     +G   L+ L+ VA+ P L YNL S+                ++  ERG      F    +      F   T+ +    +I+ G A      +  T VDIN FHCA+GHSH V L  TA +    +   LVG+L  C GC+  K +
Sbjct:  381 YVADTGATTHMFANTDGFVHYEDCDRRVRVAAGETFSIVGYGDVTVTLSSRDGTTDLL-LKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFR--THTEHACAAIAPGNAKAPSXKASSTPVDINDFHCAYGHSHEVLLRTTAKQ----QGTTLVGELRECLGCSTAKGL 569          
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.450e-12
Identity = 61/204 (29.90%), Postives = 90/204 (44.12%), Query Frame = 1
Query:  127 GFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHSF---------TTDASAV-----KHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDINLFHCAFGHSHGVALWKTA----TRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLS-GRKPTSLGGSYYLMVVCDDFSTYT 681
            G+G ++LV   ++G  P+  L + A      YNL S+   AE GH++         TT A          K      Y+ KP    +  A ++       T   +N +H A GH+H   L  TA     +L DG  +P       C GC++ K   K V   T  R V     V++DL    K  S+GGS+Y +++ DDFS +T
Sbjct:   32 GYGDVTLVLQTEDGGVPVPVL-NAAQVREAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKEATPTYLNEYHLANGHAHETMLRITAEQQGVQLTDGPLLP-------CLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWT 227          
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A5N6P2G7_9ASTR (Protein DETOXIFICATION n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P2G7_9ASTR)

HSP 1 Score: 69.3 bits (168), Expect = 5.790e-10
Identity = 69/235 (29.36%), Postives = 103/235 (43.83%), Query Frame = 1
Query:   19 DSGASEHMTFSLKGMFDLDPVSKPMITATGDE--YAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHS--FTTDASAVKHK--AFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDIN----LFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSG-RKPTSLGGSYYLMVVCDDFSTYTWVY 690
            DSG S HMT S +    LD   K  +   GD+    +E  GT+ +    D+       L+ V YAP L YNL S+    ++G+S  F      +K+K      M           L A+  T G  P    + N    L+H  +GH +   L K  +  K  + +P +   + C GC +GK       S +    V L   +  DL G  +  SLGGSYY +++ DD++   WV+
Sbjct:  558 DSGCSNHMTGSKESFTVLDETFKLEVNL-GDKKKLGVESRGTVKIPLKNDK----YKLLDDVYYAPRLEYNLLSVGQLMKKGYSLMFEDGKCTIKNKMSGINLMAINVSNNNMFLLDASQDTGGDEPSPLKNSNHTSKLWHLRYGHLNYQGL-KQLSDKKMVQGLPPISLSDPCEGCIMGKQHKLPFQSKSWKATVKL-GLIHADLCGPMQVPSLGGSYYDLLLIDDYTRMNWVH 785          
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: B1PJ44_THAPS (Gag-pol polyprotein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B1PJ44_THAPS)

HSP 1 Score: 62.0 bits (149), Expect = 1.810e-7
Identity = 61/238 (25.63%), Postives = 96/238 (40.34%), Query Frame = 1
Query:   19 DSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHSFTTDASAVKHKAFMAMTYRKKPLQSISLGAAVLTP-GHSPGTTV---------------DINLFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSGRKPTSLGGSYYLMVVCDDFSTYTW 684
            D+G+S H+     G++D+ P+S+ +    G        G L++V    +G +    L  V Y    +  + S+          T D    KH+    +TY  +    I       T  G  PG  V                IN +H   GH + V    TA    +     +VG ++ C  CA+GK+  K VP     R  +   R+F+D+S  K  S+GGS   ++V DD +   W
Sbjct:  390 DTGSSCHIVNDDTGLYDITPISEVVGGIGGQSIRATMMGRLNVVIKQADGTQVKRVLYPVKYCLGATERIWSLNQEVNDARLSTDD----KHR--YVLTYNDEQQTKIVFDRRAKTNNGWVPGVEVIQDTAEIGMFTKQTKTINEYHEELGHPNMVVTRSTAKARHEN----VVGPIQQCEDCAVGKAHQKRVPKQPVARAKNPGERLFLDISHPKQQSIGGSNDWILVADDATDNCW 617          
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A2U1QM86_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QM86_ARTAN)

HSP 1 Score: 57.4 bits (137), Expect = 6.530e-6
Identity = 58/235 (24.68%), Postives = 98/235 (41.70%), Query Frame = 1
Query:    4 VAYTCDSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSM-KVAAERGHSFTTDASAVKHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDIN----LFHCAFGHSHGVALWKTATRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSGR-KPTSLGGSYYLMVVCDDFSTYTWVY 690
            VA+  DSGA++H++ +LK M +L     P++ +      +    T+ +  V    V   + L +V Y P  +YN+ S+ K+      S T  AS    +              +   ++V TP   P T +  +    L+H   GH     L     R+K          +  C+ C L K +     S +++   SLF  + +D+ G  K T++    Y + + DD S  TW Y
Sbjct:  418 VAWIIDSGATDHISITLKIMHNLHHCHTPILVS------LPNGQTVKVTIVGSVKVNEHITLHNVFYIPTFTYNIISVSKLLLGTTISLTLTASLCIFQDQNKRIALGNLCDGLYFLSSVSTPSAKPSTILHCSSKTQLWHSRLGHPSIPVL----KRIKSLSSFISNNSVTHCNICHLAKQVALPFQS-SNSHATSLFDLIHMDVWGPYKHTTINNCKYFLTIVDDHSRATWTY 641          
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Match: A0A1W7R6H7_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6H7_AEDAL)

HSP 1 Score: 57.0 bits (136), Expect = 8.600e-6
Identity = 64/230 (27.83%), Postives = 97/230 (42.17%), Query Frame = 1
Query:   19 DSGASEHMTFSLKGMFDLDPVSKPMIT-ATGDEYAIEGFGTLSLVFVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHS--FTTDASAV-KHKAFMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDINLFHCAFGHSHGVALWKTATR-LKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFVDLSG-RKPTSLGGSYYLMVVCDDFSTYTWVY 690
            DSGAS HM        +   +S   +T A G+E A+ G G+ +L+ + D      VKL  V + P L  +L S+    E+G    FT +   + K+   +A   + + L  ++L    L    +      I+++H   GH    A+ K     L  G  I      E C  C  GK      P  T  +   +   V  D+ G  K  + GG  Y M + DDF+ +T VY
Sbjct:  278 DSGASCHMCGEQDFFENYAELSGMTVTLADGNEAAVAGKGSCTLMCLDDVHNHHEVKLTDVLHVPSLDAHLVSVGRFTEKGADVLFTQNTCKIMKNGKVVATADKSEGLYRLNLLRNKLLKAETKHPKNCIHMWHKKLGHRDPDAIQKLVQEDLATGIRIEKCAVDEDCECCLEGKLSRLPFPKQTGEQSKKMLDLVHTDVCGPMKTITPGGIRYFMTMIDDFTRFTKVY 507          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KSM6_9PHAE8.610e-1329.08CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JZ88_9PHAE1.450e-1229.90Integrase catalytic domain-containing protein (Fra... [more]
A0A5N6P2G7_9ASTR5.790e-1029.36Protein DETOXIFICATION n=1 Tax=Mikania micrantha T... [more]
B1PJ44_THAPS1.810e-725.63Gag-pol polyprotein n=1 Tax=Thalassiosira pseudona... [more]
A0A2U1QM86_ARTAN6.530e-624.68Uncharacterized protein n=1 Tax=Artemisia annua Ta... [more]
A0A1W7R6H7_AEDAL8.600e-627.83Putative pol polyprotein (Fragment) n=1 Tax=Aedes ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10443contigD-mesarthrocarpus_Contig10443:967..1688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog82508.K1VLE6
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size690
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.49e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VGMM@5234|Tremellales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size690
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.729279-CDS-D-mesarthrocarpus_Contig10443:966..13621680789182.729279-CDS-D-mesarthrocarpus_Contig10443:966..1362Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10443 967..1362 -
1680789182.7437813-CDS-D-mesarthrocarpus_Contig10443:1394..16881680789182.7437813-CDS-D-mesarthrocarpus_Contig10443:1394..1688Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10443 1395..1688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10443.1.1prot_D-mesarthrocarpus_Contig10443.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10443 967..1688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10443.1.1

>prot_D-mesarthrocarpus_Contig10443.1.1 ID=prot_D-mesarthrocarpus_Contig10443.1.1|Name=mRNA_D-mesarthrocarpus_Contig10443.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=230bp
MVAYTCDSGASEHMTFSLKGMFDLDPVSKPMITATGDEYAIEGFGTLSLV
FVVDEGVEPLVKLEHVAYAPHLSYNLHSMKVAAERGHSFTTDASAVKHKA
FMAMTYRKKPLQSISLGAAVLTPGHSPGTTVDINLFHCAFGHSHGVALWK
TATRLKDGKEIPLVGKLETCSGCALGKSICKAVPSFTHNRVVSLFARVFV
DLSGRKPTSLGGSYYLMVVCDDFSTYTWVY
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10443:967..1688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10443.1.1 ID=mRNA_D-mesarthrocarpus_Contig10443.1.1|Name=mRNA_D-mesarthrocarpus_Contig10443.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=722bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10443:967..1688- (Discosporangium mesarthrocarpum MT17_79)
ATGGTAGCCTACACGTGTGATTCTGGTGCCTCTGAGCACATGACTTTCTC CTTAAAAGGCATGTTTGACTTGGATCCAGTTTCAAAACCCATGATCACTG CTACCGGGGATGAGTATGCCATCGAGGGATTTGGCACTTTGAGTTTGGTC TTTGTTGTTGATGAAGGTGTCGAACCTTTAGTGAAATTAGAACATGTTGC TTATGCCCCTCACCTATCATACAACCTTCACTCTATGAAGGTCGCTGCGG AAAGGGGGCACAGTTTCACAACTGATGCCTCTGCAGTTAAGCATGTAGGG GAAACCTCAAGTTTGAGCCCCACAAGAAGGCCTTTATGGCCATGACTTAC CGCAAGAAACCCCTGCAGTCAATCTCTCTTGGTGCCGCTGTGCTCACTCC TGGCCATTCCCCTGGTACAACTGTGGACATTAACCTGTTCCATTGTGCTT TTGGCCACTCCCACGGGGTCGCCCTGTGGAAGACTGCAACAAGACTAAAA GACGGAAAGGAGATCCCTCTGGTGGGCAAGCTGGAAACGTGTTCAGGCTG CGCTCTGGGCAAGAGCATATGCAAGGCCGTTCCCAGCTTCACCCACAACA GGGTGGTGAGCCTGTTTGCTCGAGTCTTTGTTGACCTTAGTGGTCGTAAA CCGACGTCTCTTGGGGGGTCGTACTATCTCATGGTAGTGTGCGATGATTT CTCCACGTACACATGGGTGTAT
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10443:967..1688-

>mRNA_D-mesarthrocarpus_Contig10443.1.1 ID=mRNA_D-mesarthrocarpus_Contig10443.1.1|Name=mRNA_D-mesarthrocarpus_Contig10443.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=690bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10443:967..1688- (Discosporangium mesarthrocarpum MT17_79)
ATGGTAGCCTACACGTGTGATTCTGGTGCCTCTGAGCACATGACTTTCTC
CTTAAAAGGCATGTTTGACTTGGATCCAGTTTCAAAACCCATGATCACTG
CTACCGGGGATGAGTATGCCATCGAGGGATTTGGCACTTTGAGTTTGGTC
TTTGTTGTTGATGAAGGTGTCGAACCTTTAGTGAAATTAGAACATGTTGC
TTATGCCCCTCACCTATCATACAACCTTCACTCTATGAAGGTCGCTGCGG
AAAGGGGGCACAGTTTCACAACTGATGCCTCTGCAGTTAAGCATAAGGCC
TTTATGGCCATGACTTACCGCAAGAAACCCCTGCAGTCAATCTCTCTTGG
TGCCGCTGTGCTCACTCCTGGCCATTCCCCTGGTACAACTGTGGACATTA
ACCTGTTCCATTGTGCTTTTGGCCACTCCCACGGGGTCGCCCTGTGGAAG
ACTGCAACAAGACTAAAAGACGGAAAGGAGATCCCTCTGGTGGGCAAGCT
GGAAACGTGTTCAGGCTGCGCTCTGGGCAAGAGCATATGCAAGGCCGTTC
CCAGCTTCACCCACAACAGGGTGGTGAGCCTGTTTGCTCGAGTCTTTGTT
GACCTTAGTGGTCGTAAACCGACGTCTCTTGGGGGGTCGTACTATCTCAT
GGTAGTGTGCGATGATTTCTCCACGTACACATGGGTGTAT
back to top