mRNA_D-mesarthrocarpus_Contig1044.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1044.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig1044.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1044.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1044contigD-mesarthrocarpus_Contig1044:8778..10508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size448
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.3513577-UTR-D-mesarthrocarpus_Contig1044:8777..89131680789182.3513577-UTR-D-mesarthrocarpus_Contig1044:8777..8913Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1044 8778..8913 +
1680789182.3907695-UTR-D-mesarthrocarpus_Contig1044:10487..105081680789182.3907695-UTR-D-mesarthrocarpus_Contig1044:10487..10508Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1044 10488..10508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.361716-CDS-D-mesarthrocarpus_Contig1044:8913..91411680789182.361716-CDS-D-mesarthrocarpus_Contig1044:8913..9141Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1044 8914..9141 +
1680789182.3763525-CDS-D-mesarthrocarpus_Contig1044:10424..104871680789182.3763525-CDS-D-mesarthrocarpus_Contig1044:10424..10487Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1044 10425..10487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1044.3.1prot_D-mesarthrocarpus_Contig1044.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1044 8914..10487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1044.3.1

>prot_D-mesarthrocarpus_Contig1044.3.1 ID=prot_D-mesarthrocarpus_Contig1044.3.1|Name=mRNA_D-mesarthrocarpus_Contig1044.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=97bp
MAVGPCASFVCCVVVRERVRVITWGQGSGFCGVDDRSFKMSHLLQCAMCM
RLSGFLFSPPTSHNRKTLLCSTIGALFHCTCIMLPCIALCSVKCVL*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1044:8778..10508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1044.3.1 ID=mRNA_D-mesarthrocarpus_Contig1044.3.1|Name=mRNA_D-mesarthrocarpus_Contig1044.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1731bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1044:8778..10508+ (Discosporangium mesarthrocarpum MT17_79)
GAAGATCAGGGTGAGTTTTTCTGTTGTTGTGTTCGATCTGATTTTTTTGC
TTTTTTATCAAGGGGAGCGGCTTTGGGGGGGCCAGGACTGGGGTTGGGTT
ATAAGGGTTAGGGTTAGGGTTAGGGTTGGTGATGGCATGGCAGTCGGTCC
ATGTGCTTCGTTCGTCTGCTGTGTTGTGGTCAGGGAAAGGGTTAGGGTAA
TAACCTGGGGTCAGGGGTCGGGATTTTGTGGGGTGGATGACAGGTCGTTC
AAGATGTCCCATCTCTTGCAGTGTGCAATGTGCATGCGTTTGTCTGGCTT
TCTTTTCTCACCTCCAACATCACACAATAGGAAGACACTACTGTGCAGTA
CTATAGGTGCTTTATTTCAGTACAGGTGCTACAAAGAGAAAGATCAAAGA
ATTGGGATAGTGATTAGGGGAAGTCAGGGATAGTGGTAGAGGATAGTTAA
GGATAGTGACCAGGGATAGTGGTTGGAGGTAGTAGTCAGGAATAGTAAAT
GGGGGGGGGGGCAATTGTGCTGGTTAGGGTTAGGGTTAGATTTGTTTCCC
TTCGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGAGTTCAGATCATTCCG
CGAAGCAGCATCAAAGCTGTGCCACACAGACAAACCAGGACTGATGCCAT
CTAGCTTGATTTGAACAAGGAGAACAGCAGGAGTAAGACTGGACCAAGGA
CAACCCATCACAGAAGTACAGTGATGGTAACCCAAACTCTAACCCTAACT
AGATGGTCCTTGATACTAGTAGCAAACCCAATCCAAAACCCAATGGCCCT
ATGCTACTAATGGTGATGTTATCCCTAACCCTCATGCCAACACAGTGTGA
GTTTAGTTTCGGGTTACATTTACAGGTGGGAGTAAGAATTGGGATTTGTC
AGCCGCTTTTGACCATGTTTTTAACCTTGAAAAAGGTAGGAAAAAACATG
TACTCGGAAGCGATAAGGTATACCTCCAGTGAAAGATGTACTGACTCCAC
ATTGTTGCAGTGTCGTGTGGTACATATTCCAGTGTAGTGGGGTACGTTGC
CATCAACGCGCATTGATAGAATCGTCATGCCTATGCCCACCTAGCTCCAG
ATCTTTATTGAATGGTGCTTTTGATCATCTAGCTCTGCGATACAGTTCAT
TTGTTTGTCTGTTTCTATGATACATTCTTTTTGGTCATCTAGCTCTGCTG
TATTATATTTTATTTATTTTGCCCTTCCATGTGAGAGGTAGTATGCTTTG
TGCCGAGTACTACCTTGCAGTGGTAGGGTTAGGGTTAGGGTTTAACATGA
AGTAACACTATATAACCCTAACCCTAACCCTGAGCGTTGGATGTGTGTCC
CTGAGAGCAAGAGAGAGCAGCAGCACCCTTGGCCCTCCTCACCCCTCAAG
CCTCAACATTGGCCCTTACCCTGATCCTAACCCTTGCCCTAGATCTCAAT
ATCAAATTTGTGAAGTACTAGTATGATATAAGATAGAGTATAAGATGTCA
TACGGAACACAGTATAGGATATAGCTCCTTTGATATTTTTGGAATGGTTT
GTGTACCTTGCTAGAGCTGATGTAAACATGATAAATGATAAAACTATGCA
TCGCATATGTCGCCCCTCTAACCTGGGCCTACCTCTTTCTCTTTTACTTT
CATTGCACATGTATCATGCTGCCATGTATTGCGTTATGTTCTGTTAAGTG
TGTGCTTTAAACAATGTCTTTCTTTCTTTCT
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1044:8778..10508+

>mRNA_D-mesarthrocarpus_Contig1044.3.1 ID=mRNA_D-mesarthrocarpus_Contig1044.3.1|Name=mRNA_D-mesarthrocarpus_Contig1044.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=291bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1044:8778..10508+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCAGTCGGTCCATGTGCTTCGTTCGTCTGCTGTGTTGTGGTCAGGGA
AAGGGTTAGGGTAATAACCTGGGGTCAGGGGTCGGGATTTTGTGGGGTGG
ATGACAGGTCGTTCAAGATGTCCCATCTCTTGCAGTGTGCAATGTGCATG
CGTTTGTCTGGCTTTCTTTTCTCACCTCCAACATCACACAATAGGAAGAC
ACTACTGTGCAGTACTATAGGTGCTTTATTTCATTGCACATGTATCATGC
TGCCATGTATTGCGTTATGTTCTGTTAAGTGTGTGCTTTAA
back to top