mRNA_D-mesarthrocarpus_Contig10437.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10437.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig10437.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: D7G5A9_ECTSI (Vesicle docking protein P115 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-20
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    4 QLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            QLT++NLEVKKFVAFQEGFERLF IM+ EG LEGG VIVKDCL VC NLLSGS++T+
Sbjct:  169 QLTTSNLEVKKFVAFQEGFERLFDIMSGEGMLEGGSVIVKDCLHVCNNLLSGSSLTK 225
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: G9NHM5_HYPAI (Uncharacterized protein n=5 Tax=Trichoderma TaxID=5543 RepID=G9NHM5_HYPAI)

HSP 1 Score: 63.5 bits (153), Expect = 2.540e-10
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    7 LTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            LTS+++E++K VAFQ  FE+LF I+A +GSL  GG  V+DCL +  NLL G+A  Q
Sbjct:  181 LTSSSIEIQKLVAFQSAFEKLFVIIAGDGSLSEGGRTVEDCLILLANLLRGNAANQ 236
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: A0A167G7Q0_METRR (Vesicle tethering protein p115-like protein n=2 Tax=Metarhizium rileyi TaxID=1649241 RepID=A0A167G7Q0_METRR)

HSP 1 Score: 62.4 bits (150), Expect = 6.490e-10
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 LQLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            + LT T++E++K VAF+  FER+FAI+A EGSL  GG  V+DCL +  NLL  +A  Q
Sbjct:  179 IALTPTSMEIQKLVAFESAFERIFAIVAAEGSLADGGRTVEDCLILMANLLRQNAFNQ 236
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: G9N8T9_HYPVG (Uncharacterized protein n=7 Tax=Trichoderma TaxID=5543 RepID=G9N8T9_HYPVG)

HSP 1 Score: 62.0 bits (149), Expect = 8.880e-10
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    7 LTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            LTS+++E++K VAFQ  FE+LFAI+  +GSL  GG  V+DCL +  NLL G+   Q
Sbjct:  181 LTSSSIEIQKLVAFQNAFEKLFAIITADGSLSEGGRTVEDCLILLANLLRGNLANQ 236
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: G0RD45_HYPJQ (ER to Golgi protein transport n=5 Tax=Trichoderma TaxID=5543 RepID=G0RD45_HYPJQ)

HSP 1 Score: 62.0 bits (149), Expect = 8.880e-10
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    7 LTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            LTS++LE++K VAFQ  FE+LF I+A +GSL  GG  V+DCL +  NLL G+   Q
Sbjct:  182 LTSSSLEIQKLVAFQNAFEKLFDIIAADGSLSEGGRTVEDCLILLANLLRGNLANQ 237
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: UPI0007674DD4 (general vesicular transport factor p115 n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=UPI0007674DD4)

HSP 1 Score: 60.8 bits (146), Expect = 2.260e-9
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 LQLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            +QLT  N  ++K VAF+  F+R+F ++A+EG+ EGG ++V+DCL + LNLL G+   Q
Sbjct:  194 IQLTKANANIQKIVAFENAFDRIFDVIAQEGNAEGG-IVVEDCLLLMLNLLRGNVSNQ 250
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: A0A090M5P8_OSTTA (Vesicle tethering protein Uso1/P115-like, head domain n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M5P8_OSTTA)

HSP 1 Score: 60.8 bits (146), Expect = 2.270e-9
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 LQLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            ++LT  + E++K VAF+  FER FA+M EEG +EGG V+V+DCL++C NLL  +   Q
Sbjct:  197 VELTKDHEELQKIVAFEGAFERAFAVMREEGGVEGG-VVVQDCLELCNNLLRDNPSNQ 253
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: A0A1Y5IEM4_OSTTA (Vesicle tethering family protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IEM4_OSTTA)

HSP 1 Score: 60.8 bits (146), Expect = 2.280e-9
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 LQLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            ++LT  + E++K VAF+  FER FA+M EEG +EGG V+V+DCL++C NLL  +   Q
Sbjct:  341 VELTKDHEELQKIVAFEGAFERAFAVMREEGGVEGG-VVVQDCLELCNNLLRDNPSNQ 397
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BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: V9IKN8_APICE (General vesicular transport factor p115 n=1 Tax=Apis cerana TaxID=7461 RepID=V9IKN8_APICE)

HSP 1 Score: 60.5 bits (145), Expect = 3.080e-9
Identity = 27/58 (46.55%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 LQLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            +QLT  N  ++K VAF+  F+R+F ++A+EG++EGG ++V+DCL + LNLL G+   Q
Sbjct:  194 IQLTKGNANIQKIVAFENAFDRIFDVIAQEGNVEGG-IVVEDCLLLMLNLLRGNISNQ 250
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Match: A0A7M7R6B4_APIME (general vesicular transport factor p115 n=30 Tax=Apinae TaxID=70987 RepID=A0A7M7R6B4_APIME)

HSP 1 Score: 60.5 bits (145), Expect = 3.100e-9
Identity = 27/58 (46.55%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 LQLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNLLSGSAVTQ 174
            +QLT  N  ++K VAF+  F+R+F ++A+EG++EGG ++V+DCL + LNLL G+   Q
Sbjct:  194 IQLTKGNANIQKIVAFENAFDRIFDVIAQEGNVEGG-IVVEDCLLLMLNLLRGNISNQ 250
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10437.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5A9_ECTSI2.400e-2078.95Vesicle docking protein P115 n=2 Tax=Ectocarpus Ta... [more]
G9NHM5_HYPAI2.540e-1053.57Uncharacterized protein n=5 Tax=Trichoderma TaxID=... [more]
A0A167G7Q0_METRR6.490e-1051.72Vesicle tethering protein p115-like protein n=2 Ta... [more]
G9N8T9_HYPVG8.880e-1051.79Uncharacterized protein n=7 Tax=Trichoderma TaxID=... [more]
G0RD45_HYPJQ8.880e-1053.57ER to Golgi protein transport n=5 Tax=Trichoderma ... [more]
UPI0007674DD42.260e-946.55general vesicular transport factor p115 n=1 Tax=Du... [more]
A0A090M5P8_OSTTA2.270e-950.00Vesicle tethering protein Uso1/P115-like, head dom... [more]
A0A1Y5IEM4_OSTTA2.280e-950.00Vesicle tethering family protein n=2 Tax=Ostreococ... [more]
V9IKN8_APICE3.080e-946.55General vesicular transport factor p115 n=1 Tax=Ap... [more]
A0A7M7R6B4_APIME3.100e-946.55general vesicular transport factor p115 n=30 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10437contigD-mesarthrocarpus_Contig10437:3832..4005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5A9
Preferred nameUSO1
PFAMsUso1_p115_C,Uso1_p115_head
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K11675,ko:K20361,ko:K20478
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0001650,GO:0002009,GO:0002165,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007346,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010256,GO:0010389,GO:0010564,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022406,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031312,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044719,GO:0045056,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048211,GO:0048219,GO:0048278,GO:0048471,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051726,GO:0060429,GO:0060562,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090066,GO:0090114,GO:0090498,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140056,GO:1901987,GO:1901990,GO:1902749
Exons1
Evalue3.93e-21
EggNOG OGsKOG0946@1|root,KOG0946@2759|Eukaryota
DescriptionGolgi vesicle docking
Cds size174
COG categoryO
BRITEko00000,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.242929-CDS-D-mesarthrocarpus_Contig10437:3831..40051680789182.242929-CDS-D-mesarthrocarpus_Contig10437:3831..4005Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10437 3832..4005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10437.4.1prot_D-mesarthrocarpus_Contig10437.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10437 3832..4005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10437.4.1

>prot_D-mesarthrocarpus_Contig10437.4.1 ID=prot_D-mesarthrocarpus_Contig10437.4.1|Name=mRNA_D-mesarthrocarpus_Contig10437.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=58bp
LQLTSTNLEVKKFVAFQEGFERLFAIMAEEGSLEGGGVIVKDCLDVCLNL
LSGSAVTQ
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mRNA from alignment at D-mesarthrocarpus_Contig10437:3832..4005-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10437.4.1 ID=mRNA_D-mesarthrocarpus_Contig10437.4.1|Name=mRNA_D-mesarthrocarpus_Contig10437.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=174bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10437:3832..4005- (Discosporangium mesarthrocarpum MT17_79)
CTGCAGTTGACATCAACGAACCTGGAGGTGAAGAAGTTTGTGGCGTTCCA
GGAGGGCTTCGAGAGGCTCTTTGCCATCATGGCAGAGGAAGGGAGCTTGG
AGGGTGGGGGAGTGATTGTGAAGGATTGCCTGGACGTCTGCCTGAACCTC
CTCTCAGGCTCCGCTGTGACGCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10437:3832..4005-

>mRNA_D-mesarthrocarpus_Contig10437.4.1 ID=mRNA_D-mesarthrocarpus_Contig10437.4.1|Name=mRNA_D-mesarthrocarpus_Contig10437.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=174bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10437:3832..4005- (Discosporangium mesarthrocarpum MT17_79)
CTGCAGTTGACATCAACGAACCTGGAGGTGAAGAAGTTTGTGGCGTTCCA
GGAGGGCTTCGAGAGGCTCTTTGCCATCATGGCAGAGGAAGGGAGCTTGG
AGGGTGGGGGAGTGATTGTGAAGGATTGCCTGGACGTCTGCCTGAACCTC
CTCTCAGGCTCCGCTGTGACGCAG
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