mRNA_D-mesarthrocarpus_Contig10428.1.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10428.1.2
Unique NamemRNA_D-mesarthrocarpus_Contig10428.1.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10428.1.2 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.100e-32
Identity = 105/278 (37.77%), Postives = 131/278 (47.12%), Query Frame = 1 
Query:    1 QVLALQMHRGLRPL--------------EGLADVD---DGGAGADGGGEG--RIQTASQAVEDFVRKNMQEWFNVWMAAYTTFSLDPKLVDGAKAEALKAGVDLDGLLLLPAEERAFGDGFVYHLPALETLLGMSPPSQEDLNAMEEEQXXXXXXXXXVLTLENGSVDASRRLGEISSSLPMFQHIWKACTEANRTWSLAEAQAESIHAFRLFIEVCVLRRQPGYHPYPLQAGASGVGGQGAGAXXXXXXXXXXXXXXVSRGGAGGVLGEVSPARTPL 777
            ++LAL+MHRGLRPL               G  D      GG G DGGG G    + A++AVE F+R N++E+F  W + YT FSLDP+L   AK  A   G+ LD  L++P  ER FGDGF+YH+P LE L+G+ P                                                H  +A      +  L    A  + AFR+F+EVCVLRRQPGY P P  A  S    Q +G    XXXXXXX          GG  GEVSPARTP+
Sbjct:   72 EILALEMHRGLRPLGAAALPPPLKAAALPGNGDAAGKVSGGDGDDGGGGGVEGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLVVPTRERVFGDGFLYHIPGLERLVGLPP------------------------------------------------HEGRASEGGGDSLQLV---AVVMRAFRVFVEVCVLRRQPGYQPAPAPAPPSSSSTQASGNPGGXXXXXXX----------GGDPGEVSPARTPV 288
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BLAST of mRNA_D-mesarthrocarpus_Contig10428.1.2 vs. uniprot
Match: D7FGV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV4_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.120e-7
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  508 ACTEANRTWSLAEAQAESIHAFRLFIEVCVLRRQPGYHPYPLQA 639
            AC  ANR WSLAEA+A  + AFR+F+EVCVLRRQPGY   P  A
Sbjct:  615 ACEAANRNWSLAEAEAVVMRAFRVFVEVCVLRRQPGYQAAPAPA 658
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10428.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJX9_9PHAE4.100e-3237.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV4_ECTSI1.120e-765.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10428contigD-mesarthrocarpus_Contig10428:1046..3709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons5
Cds size759
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10428.1.2prot_D-mesarthrocarpus_Contig10428.1.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10428 1046..3691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789181.4218094-CDS-D-mesarthrocarpus_Contig10428:1045..12701680789181.4218094-CDS-D-mesarthrocarpus_Contig10428:1045..1270Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10428 1046..1270 -
1680789181.4358568-CDS-D-mesarthrocarpus_Contig10428:1834..19221680789181.4358568-CDS-D-mesarthrocarpus_Contig10428:1834..1922Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10428 1835..1922 -
1680789181.445272-CDS-D-mesarthrocarpus_Contig10428:2336..25131680789181.445272-CDS-D-mesarthrocarpus_Contig10428:2336..2513Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10428 2337..2513 -
1680789181.4549208-CDS-D-mesarthrocarpus_Contig10428:3196..32731680789181.4549208-CDS-D-mesarthrocarpus_Contig10428:3196..3273Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10428 3197..3273 -
1680789181.4727316-CDS-D-mesarthrocarpus_Contig10428:3499..36911680789181.4727316-CDS-D-mesarthrocarpus_Contig10428:3499..3691Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10428 3500..3691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789181.4860678-UTR-D-mesarthrocarpus_Contig10428:3691..37091680789181.4860678-UTR-D-mesarthrocarpus_Contig10428:3691..3709Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10428 3692..3709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10428.1.2

>prot_D-mesarthrocarpus_Contig10428.1.2 ID=prot_D-mesarthrocarpus_Contig10428.1.2|Name=mRNA_D-mesarthrocarpus_Contig10428.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=253bp
MHRGLRPLEGLADVDDGGAGADGGGEGRIQTASQAVEDFVRKNMQEWFNV
WMAAYTTFSLDPKLVDGAKAEALKAGVDLDGLLLLPAEERAFGDGFVYHL
PALETLLGMSPPSQEDLNAMEEEQGQGQGQGQGVLTLENGSVDASRRLGE
ISSSLPMFQHIWKACTEANRTWSLAEAQAESIHAFRLFIEVCVLRRQPGY
HPYPLQAGASGVGGQGAGAGASGESGSDQGEGAVSRGGAGGVLGEVSPAR
TPL
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mRNA from alignment at D-mesarthrocarpus_Contig10428:1046..3709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10428.1.2 ID=mRNA_D-mesarthrocarpus_Contig10428.1.2|Name=mRNA_D-mesarthrocarpus_Contig10428.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2664bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10428:1046..3709- (Discosporangium mesarthrocarpum MT17_79)
CAGGTCCTTGCTCTCCAGATGCACCGGGGTCTCCGTCCCTTGGAAGGCCT
GGCAGATGTGGATGATGGGGGGGCAGGGGCAGATGGGGGGGGGGAGGGGC
GGATCCAAACCGCCTCGCAGGCGGTGGAAGATTTCGTTCGTAAGAACATG
CAGGAGTGGTTTAATGTCTGGATGGCTGCCTACACAACGTTCAGCCTTGA
CCCAAAGCTGGTGAGAGAGAGATGCCAGGGGGAGAAAGGAGGTGGAAGGG
GAGGGTTGGGTGGGGGATCAAGCGTCACTTTGCCTGCACAGCATGACTGG
GAAGCGGAAAGGAGCTTGTGACGTTGCCGGTTTTCTTCTTCTGCACTGGC
ATTTGCAATCCACTTTGAAGCACAGTTTGTTCGTCAGTACCCATCGATTT
GAGCAGCTGGTTGTGTCTTGGCGGTCTTCTGAACAGGTGGATGGGGCCAA
AGCAGAGGCCCTGAAGGCTGGCGTGGACCTGGATGGGCTCCTCCTCCTCC
CAGCGGAAGAAAGGTTTGATGATACCTTCACAGACATGTGGGGATGCAAG
CATGCTCTCATATCTTTTTCTTGTGTTCACCACTGCACTTCTGTAACTGG
AGCTGTAACTATAACTGTAACTTCTCTGACCATGGCCCAGGAGATAAAGT
CTACGTGCTTGGCGGTCCCTTCATTCAGCACCTTAACCCCATATGTGTAT
ACATTTTGTGTATGACATCCCCCAACCGTTTTAATGTGTTGCGTGCTTTG
TGGCTTTAGTCTGTTGTGGGAGCAGCACATGGCCTCCTCCATGTTCCTCC
AAGTTCAACCTGTCCCCCCCATCCCCCCTGTCCCCCCCCCAAATATATAT
ATATATATATATATGTGCGTGAAAAAAGAATTGAATTACAAAAAGAAAAA
GAAGAGGAAGAGAGGTCGGCAGTACTACAGCAGTATAGGACGATGTGAAG
TATGGCAGGGGCCAGAGCTCTGGGGTCCTACCCCCTTTCCTGCTAGAGCT
CACACCTCAACACTTATGCCCGTCCGTTGGACTCTAGGTTGGCTGGCTAA
GGGTTAGGGTTAAGATTGGCATTGGCTGATTGGTCGACTCTGACTGATCG
ATGGAATTGGTTGACTGATTGGCTGCCTGCACCCTTGCCCCCCTCACCCC
GCCCCCACCCCCCCCCACCCCCCCACCAATGACCACTGCAAAACAGAGCC
TTCGGTGATGGCTTTGTTTACCACCTCCCAGCCCTTGAGACCCTTCTGGG
CATGTCCCCACCCTCCCAGGAGGACCTCAATGCCATGGAGGAGGAACAAG
GGCAGGGTCAGGGTCAGGGGCAGGGGGTGCTTACCCTGGAAAATGGATCT
GTGGATGCTTCTCGTCGGTTGGGGTGAGTTTAGCTTCAAGTTGAGGTACA
CAGTGCTCCAAAGTATGCAATCATATCTTTTGGCCTCTGGACATAACAGG
TGGCGTTTGCAGGAGCAGGTACTGTGTTGGAAGCTATTCCTGTGATGGGG
GCATTCTGTCGGGGGATCTGCATTGCTGTGTTTAGGGCCTATGTCTGGCC
CCAAGTTTTCATGGCTTGGCCTACGTCACTGCTACTGTTGTATGGGAACC
CTCGCCAGCGCTGCTTGGCATTCACTGTGCTTTCTTGTTTAGTAGTGTGC
TCTAGTGTACTTGTGGCTCTTGTTGTCCACACATCACCTGTGACCCCACA
CCCCCGATCCAGTTGCCCCCCTCCCTGCCCACACACTTGACATGCACTTC
CCTGTCCCTTTTTTCTGTCTCTTGTGTCTTTTTGCAGGGAGATCTCATCA
TCGCTGCCAATGTTCCAACATATATGGAAGGCATGCACAGAGGCCAACAG
GACCTGGTCCCTTGCTGAGGCCCAAGTAAGAGGGGTAGGATTGCACAGAC
AGATAAATGCACACTGAAGGTGGATAGGTGCTGAATGATCAGCTAGCTCT
GGTATCACTCTGCCCCCTCAAGACCAAGCACAAAGTACAGACAGGACTGA
ATGGGCATGAGCAGTAGTACCACTTGTTCTTGAGATGGTCGGGGCCTCTG
ATACACCTCAGGAACTTATGTTTGAGTTGATCTTGAGGGGGCAGGGTGAC
ATCTACTCCAGCTTCAGCTGGCCGGACACTGAGCAAGCACTCTTGCTTGT
TCTCACTCTATTGGAGTTGCGTCAGCATCACGCCTTACCCTGGCGCATGC
ACGATGGTGTTTGTAAAACCAGATTGTTGAACAGGGATGCACCAGCAGTA
CATCGAAGGCCGCCAGAGACAGGAACGGAGGCAAGGGAATTCCCCAACAT
GCAAGGCAGTGTTTTGCCACAAATGCTCTCTGACATTCTCACCAGCCCTC
ACTCCCCACCCCCCATCCCCCACCCTCCTCCAAACCTTTCGCCATTGCGA
AAAATATACGCCTGGGGCATAAACTAAATATGCCTGCAGGCGGAATCCAT
CCACGCCTTCAGGTTATTCATCGAGGTGTGTGTGCTCCGCCGCCAACCAG
GCTACCACCCCTACCCCTTGCAGGCAGGGGCATCGGGGGTGGGGGGGCAG
GGGGCAGGGGCAGGGGCTTCTGGAGAATCTGGTTCTGATCAGGGGGAAGG
CGCAGTCAGCAGGGGAGGGGCAGGAGGTGTTTTGGGGGAGGTTTCTCCGG
CCCGAACCCCCCTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10428:1046..3709-

>mRNA_D-mesarthrocarpus_Contig10428.1.2 ID=mRNA_D-mesarthrocarpus_Contig10428.1.2|Name=mRNA_D-mesarthrocarpus_Contig10428.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=759bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10428:1046..3709- (Discosporangium mesarthrocarpum MT17_79)
ATGCACCGGGGTCTCCGTCCCTTGGAAGGCCTGGCAGATGTGGATGATGG
GGGGGCAGGGGCAGATGGGGGGGGGGAGGGGCGGATCCAAACCGCCTCGC
AGGCGGTGGAAGATTTCGTTCGTAAGAACATGCAGGAGTGGTTTAATGTC
TGGATGGCTGCCTACACAACGTTCAGCCTTGACCCAAAGCTGGTGGATGG
GGCCAAAGCAGAGGCCCTGAAGGCTGGCGTGGACCTGGATGGGCTCCTCC
TCCTCCCAGCGGAAGAAAGAGCCTTCGGTGATGGCTTTGTTTACCACCTC
CCAGCCCTTGAGACCCTTCTGGGCATGTCCCCACCCTCCCAGGAGGACCT
CAATGCCATGGAGGAGGAACAAGGGCAGGGTCAGGGTCAGGGGCAGGGGG
TGCTTACCCTGGAAAATGGATCTGTGGATGCTTCTCGTCGGTTGGGGGAG
ATCTCATCATCGCTGCCAATGTTCCAACATATATGGAAGGCATGCACAGA
GGCCAACAGGACCTGGTCCCTTGCTGAGGCCCAAGCGGAATCCATCCACG
CCTTCAGGTTATTCATCGAGGTGTGTGTGCTCCGCCGCCAACCAGGCTAC
CACCCCTACCCCTTGCAGGCAGGGGCATCGGGGGTGGGGGGGCAGGGGGC
AGGGGCAGGGGCTTCTGGAGAATCTGGTTCTGATCAGGGGGAAGGCGCAG
TCAGCAGGGGAGGGGCAGGAGGTGTTTTGGGGGAGGTTTCTCCGGCCCGA
ACCCCCCTC
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