mRNA_D-mesarthrocarpus_Contig10426.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10426.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10426.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10426.1.1 vs. uniprot
Match: D7FPY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY7_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 4.080e-5
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VDGKELLRIVQSADPNAELGAAGVEVRLHRVKILAALGV 117
            +DG  L RI +++DP+AEL AAGV  RLHRVK+L+ LG+
Sbjct:  434 IDGAWLARIARASDPDAELLAAGVCARLHRVKLLSVLGI 472
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BLAST of mRNA_D-mesarthrocarpus_Contig10426.1.1 vs. uniprot
Match: A0A6H5KXZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ0_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 4.080e-5
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VDGKELLRIVQSADPNAELGAAGVEVRLHRVKILAALGV 117
            +DG  L +I +++DP+AEL AAGV  RLHRVK+L+ LG+
Sbjct:  408 IDGTRLAKIARASDPDAELLAAGVCARLHRVKLLSVLGI 446
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10426.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPY7_ECTSI4.080e-558.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXZ0_9PHAE4.080e-556.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10426contigD-mesarthrocarpus_Contig10426:717..833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789181.2993226-CDS-D-mesarthrocarpus_Contig10426:716..8331680789181.2993226-CDS-D-mesarthrocarpus_Contig10426:716..833Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10426 717..833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10426.1.1prot_D-mesarthrocarpus_Contig10426.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10426 717..833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10426.1.1

>prot_D-mesarthrocarpus_Contig10426.1.1 ID=prot_D-mesarthrocarpus_Contig10426.1.1|Name=mRNA_D-mesarthrocarpus_Contig10426.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=39bp
VDGKELLRIVQSADPNAELGAAGVEVRLHRVKILAALGV
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mRNA from alignment at D-mesarthrocarpus_Contig10426:717..833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10426.1.1 ID=mRNA_D-mesarthrocarpus_Contig10426.1.1|Name=mRNA_D-mesarthrocarpus_Contig10426.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=117bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10426:717..833+ (Discosporangium mesarthrocarpum MT17_79)
GTGGATGGGAAAGAGCTGCTGCGGATAGTCCAATCCGCTGACCCCAACGC
CGAGCTTGGGGCTGCCGGCGTTGAGGTCCGCCTTCATCGAGTGAAGATCC
TTGCCGCTTTAGGGGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10426:717..833+

>mRNA_D-mesarthrocarpus_Contig10426.1.1 ID=mRNA_D-mesarthrocarpus_Contig10426.1.1|Name=mRNA_D-mesarthrocarpus_Contig10426.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=117bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10426:717..833+ (Discosporangium mesarthrocarpum MT17_79)
GTGGATGGGAAAGAGCTGCTGCGGATAGTCCAATCCGCTGACCCCAACGC
CGAGCTTGGGGCTGCCGGCGTTGAGGTCCGCCTTCATCGAGTGAAGATCC
TTGCCGCTTTAGGGGTG
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