mRNA_D-mesarthrocarpus_Contig10422.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10422.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10422.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: D7FXK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK8_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.190e-34
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   49 TNPGTRLKTWSNPKGADLVRIAERLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            T  G R  TWSNP G D+V++   +W AERPF+WNGID       +GGRM V +L+DG+LWVHSPVDLD PL++AL  LGPV HIVSPNYEHVK
Sbjct:   10 TTAGRREMTWSNPMGDDMVQVLGDVWCAERPFVWNGID-------VGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVK 96          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A835ZG26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG26_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.000e-32
Identity = 62/107 (57.94%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   19 SATITPVETYTNPGTRL---KTWSNPKGADLVRIAERLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            S T TP      P  R    KTWSNPKG DL  I   +W AERPF+WN ID       +GGRMTV +L DG+LWVHSPV+LD  L++ L ELGPV H+VSPNYEHVK
Sbjct:    2 SQTATPAPQQAAPARRNARDKTWSNPKGLDLTPIKHNVWGAERPFIWNTID-------VGGRMTVIKLEDGSLWVHSPVELDPALQQTLAELGPVRHVVSPNYEHVK 101          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A812QRP3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812QRP3_9DINO)

HSP 1 Score: 118 bits (295), Expect = 7.790e-31
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    7 ATAFSATITPVETYTNPGTRLKTWSNPKGADLVRIAERLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            AT+ +AT   +   T P T    WSNP G+ L  +   LWVAERPF+WN ID       +GG+M V +L DG LWVHSPV+LD  LR+AL++LGPV HIVSPN+EHVK
Sbjct:    1 ATSTAATSDTIAAATYPST----WSNPSGSVLTALNTDLWVAERPFIWNSID-------VGGKMAVVRLPDGGLWVHSPVELDEELREALEQLGPVRHIVSPNFEHVK 97          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A812Q2U2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q2U2_9DINO)

HSP 1 Score: 117 bits (293), Expect = 1.060e-29
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   70 KTWSNPKGADLVRIAERLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            +TWSNP G+ L  +   LWVAERPF+WN ID       +GG+M V +L DG LWVHSPVDLD  LRK L++LGPV HIVSPN+EHVK
Sbjct:   79 QTWSNPTGSVLTALNTDLWVAERPFIWNSID-------VGGKMAVVRLPDGGLWVHSPVDLDEELRKGLEQLGPVRHIVSPNFEHVK 158          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A1Q9E991_SYMMI (Uncharacterized protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9E991_SYMMI)

HSP 1 Score: 120 bits (300), Expect = 1.730e-29
Identity = 61/110 (55.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 RWATAFSATITPVETYTNPGTRLKTWSNPKGADLVRIAERLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            R AT+ +AT   +   T P T    WSNP G+ L  +   LWVAERPF+WN ID       +GG+M V +L DG LWVHSPV+LD  LR ALD+LGPV HIVSPN+EHVK
Sbjct:  294 RGATSTAATSDTIAAATYPST----WSNPSGSVLTALNTDLWVAERPFIWNSID-------VGGKMAVVRLPDGGLWVHSPVELDEELRDALDQLGPVRHIVSPNFEHVK 392          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A7S0DC47_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DC47_MICPS)

HSP 1 Score: 113 bits (283), Expect = 2.830e-28
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   70 KTWSNPKGADLVRIAERL-WVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            KTWSNP G  L  + + + W AERPF WN ID       +GG+M V +L DG LWVHSPVDLD+P +KA+D LGPV H+VSPNYEHVK
Sbjct:   62 KTWSNPTGQVLTPVVDGVVWAAERPFTWNTID-------VGGKMGVVKLEDGALWVHSPVDLDAPTKKAVDALGPVRHVVSPNYEHVK 142          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A1Y1IMY2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMY2_KLENI)

HSP 1 Score: 110 bits (274), Expect = 8.340e-27
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   70 KTWSNPKGADLVRIAE-RLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEH 324
            KTWSNP G  L  +   ++W AERPFMWNGID       +GG+M V +L DG++WVHSPV LD+ L+ A+D+LGPV HIV+PNYEH
Sbjct:   91 KTWSNPSGNVLTEVVPGQVWAAERPFMWNGID-------VGGKMGVVRLRDGSVWVHSPVPLDNQLKAAMDQLGPVKHIVTPNYEH 169          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A7S4C8N9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8N9_9EUGL)

HSP 1 Score: 112 bits (281), Expect = 9.110e-27
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   76 WSNPKGADLVRIAERLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            WSNP    L ++A  LWVAERPF+WN ID       +GG+M V +LADG+LWVHSPV+LD+PL+ AL  LGPV +I+SPNYEHVK
Sbjct:  176 WSNPGKEVLKKVAPDLWVAERPFIWNSID-------VGGKMAVVRLADGSLWVHSPVELDAPLKAALAALGPVKYIMSPNYEHVK 253          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: A0A7S0IGZ2_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IGZ2_MICPS)

HSP 1 Score: 107 bits (267), Expect = 4.240e-26
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   37 VETYTNPGTRLKTWSNPKGADLVRIAERLWVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELG-PVAHIVSPNYEHVK 330
              T+  P +    WSNP G+ L  + E++W AERPF+W GID       +GG+M V ++ DG+LWVHSPVDLD  LR AL E+G  V H+VSPN+EHVK
Sbjct:   35 ARTFPPPRSHDYDWSNPSGSVLTPLREKVWAAERPFVWQGID-------VGGKMGVVKMRDGSLWVHSPVDLDDDLRAALTEIGGDVKHVVSPNFEHVK 126          
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Match: C1MGP7_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGP7_MICPC)

HSP 1 Score: 105 bits (263), Expect = 1.650e-25
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   70 KTWSNPKGADLVRIAERL-WVAERPFMWNGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAHIVSPNYEHVK 330
            KTWSNP G  L  +   + W AERPF WN ID       +GG+M V +L DG LWVHSP+DLD   R A+D LG V H+VSPNYEHVK
Sbjct:   49 KTWSNPTGNVLTDVVPGVVWAAERPFTWNAID-------VGGKMAVVRLRDGALWVHSPIDLDDATRAAIDALGSVKHVVSPNYEHVK 129          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10422.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK8_ECTSI2.190e-3462.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZG26_9STRA3.000e-3257.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812QRP3_9DINO7.790e-3154.63Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A812Q2U2_9DINO1.060e-2962.07Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A1Q9E991_SYMMI1.730e-2955.45Uncharacterized protein n=3 Tax=Symbiodinium TaxID... [more]
A0A7S0DC47_MICPS2.830e-2860.23Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A1Y1IMY2_KLENI8.340e-2758.14Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S4C8N9_9EUGL9.110e-2761.18Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0IGZ2_MICPS4.240e-2651.52Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
C1MGP7_MICPC1.650e-2556.82Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10422contigD-mesarthrocarpus_Contig10422:3407..3870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FXK8
PFAMsDUF4336
Model size333
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.59e-35
EggNOG OGs2BIUM@1|root,2RZ4V@2759|Eukaryota
DescriptionDomain of unknown function (DUF4336)
Cds size333
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789181.1751227-CDS-D-mesarthrocarpus_Contig10422:3406..35681680789181.1751227-CDS-D-mesarthrocarpus_Contig10422:3406..3568Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10422 3407..3568 +
1680789181.1927085-CDS-D-mesarthrocarpus_Contig10422:3699..38701680789181.1927085-CDS-D-mesarthrocarpus_Contig10422:3699..3870Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10422 3700..3870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10422.1.1prot_D-mesarthrocarpus_Contig10422.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10422 3407..3870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10422.1.1

>prot_D-mesarthrocarpus_Contig10422.1.1 ID=prot_D-mesarthrocarpus_Contig10422.1.1|Name=mRNA_D-mesarthrocarpus_Contig10422.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
RWATAFSATITPVETYTNPGTRLKTWSNPKGADLVRIAERLWVAERPFMW
NGIDCARFKIILGGRMTVAQLADGTLWVHSPVDLDSPLRKALDELGPVAH
IVSPNYEHVK*
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mRNA from alignment at D-mesarthrocarpus_Contig10422:3407..3870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10422.1.1 ID=mRNA_D-mesarthrocarpus_Contig10422.1.1|Name=mRNA_D-mesarthrocarpus_Contig10422.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=464bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10422:3407..3870+ (Discosporangium mesarthrocarpum MT17_79)
AGATGGGCGACTGCCTTTAGTGCCACTATCACCCCGGTGGAAACGTATAC CAACCCGGGAACCCGGCTGAAAACGTGGTCAAACCCGAAAGGCGCCGATC TGGTTCGTATTGCGGAGCGTCTCTGGGTGGCAGAGAGGCCCTTCATGTGG AATGGCATCGACGTAGGCGAGCCCTCGTCATCGGTATCAGCTTCTCATAT CCATGGTGCCATCCTCATCATCAGAAACCCTAAGAGTTGGCTCCTTCTCT ACCATTCTCATCTCCCGCCCTACGGCATTTCAAATTTACCCAGTGCGCCC GTTTCAAAATCATTTTAGGGGGACGAATGACGGTGGCACAGCTCGCGGAT GGCACCCTGTGGGTACACTCACCGGTGGATCTGGATTCCCCCCTTCGCAA GGCGTTGGATGAGCTTGGACCAGTGGCGCATATTGTCTCGCCTAACTATG AACACGTCAAGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10422:3407..3870+

>mRNA_D-mesarthrocarpus_Contig10422.1.1 ID=mRNA_D-mesarthrocarpus_Contig10422.1.1|Name=mRNA_D-mesarthrocarpus_Contig10422.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10422:3407..3870+ (Discosporangium mesarthrocarpum MT17_79)
AGATGGGCGACTGCCTTTAGTGCCACTATCACCCCGGTGGAAACGTATAC
CAACCCGGGAACCCGGCTGAAAACGTGGTCAAACCCGAAAGGCGCCGATC
TGGTTCGTATTGCGGAGCGTCTCTGGGTGGCAGAGAGGCCCTTCATGTGG
AATGGCATCGACTGCGCCCGTTTCAAAATCATTTTAGGGGGACGAATGAC
GGTGGCACAGCTCGCGGATGGCACCCTGTGGGTACACTCACCGGTGGATC
TGGATTCCCCCCTTCGCAAGGCGTTGGATGAGCTTGGACCAGTGGCGCAT
ATTGTCTCGCCTAACTATGAACACGTCAAGTGA
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