mRNA_D-mesarthrocarpus_Contig10420.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10420.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10420.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10420.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10420contigD-mesarthrocarpus_Contig10420:53..1038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size957
Hectar predicted targeting categoryother localisation
Exons2
Cds size621
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.8912868-UTR-D-mesarthrocarpus_Contig10420:52..1301680789180.8912868-UTR-D-mesarthrocarpus_Contig10420:52..130Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10420 53..130 -
1680789180.9315383-UTR-D-mesarthrocarpus_Contig10420:780..10381680789180.9315383-UTR-D-mesarthrocarpus_Contig10420:780..1038Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10420 781..1038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.90222-CDS-D-mesarthrocarpus_Contig10420:130..2271680789180.90222-CDS-D-mesarthrocarpus_Contig10420:130..227Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10420 131..227 -
1680789180.9182634-CDS-D-mesarthrocarpus_Contig10420:256..7801680789180.9182634-CDS-D-mesarthrocarpus_Contig10420:256..780Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10420 257..780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10420.1.1prot_D-mesarthrocarpus_Contig10420.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10420 131..780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10420.1.1

>prot_D-mesarthrocarpus_Contig10420.1.1 ID=prot_D-mesarthrocarpus_Contig10420.1.1|Name=mRNA_D-mesarthrocarpus_Contig10420.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=207bp
MGGGGVGRHVVDTHIPHQTSGGFEYSQCIALTHQVPANPTKHAPSLCPEV
ADKKPCTTIKFRGDGREQVYYQRPREEPDLQFSLWQHHRVNKVERRPPSP
CFQPCRGLRALCNCLAMAKIWFDNAKEGKKAAHITTTMGFCHTYLDPHLS
PNPPTPTTPCLSLHKHRLNSPIKTCDAGNEYALCSILTVIYQVCSVLYPP
TLLSMR*
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mRNA from alignment at D-mesarthrocarpus_Contig10420:53..1038-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10420.1.1 ID=mRNA_D-mesarthrocarpus_Contig10420.1.1|Name=mRNA_D-mesarthrocarpus_Contig10420.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=986bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10420:53..1038- (Discosporangium mesarthrocarpum MT17_79)
GAAAAGGACATGGACACAGACAGATATATATATATATATATATAGGTGTC
AGGGCCAGATGCAGAGCACAATATAGTGTTGGGCAAGGCCCACTGGGAAT
CACAATGAATCTGCCCAAACTTTCCTGGTCCTGCAAATTCATTTTCCGCT
CTCTGGAGCGACCAAGGCAACTGTGTATGGCTGCTGGCAAGGGAAAACAA
GGGAACAGGGGGGTGACCCTCCACAGAGGTGCAGGGCAACAGATAAACAT
GGTCAGTGATGGGGGGTGGGGGGGTGGGCAGGCATGTGGTAGACACACAT
ATCCCCCACCAGACCAGCGGGGGGTTTGAGTATAGCCAATGTATAGCTCT
GACCCACCAGGTTCCTGCCAATCCAACCAAACACGCCCCAAGCCTGTGTC
CTGAGGTGGCTGATAAAAAACCATGCACAACCATCAAATTTCGTGGGGAT
GGGAGGGAGCAGGTGTACTACCAACGGCCAAGGGAAGAGCCAGATCTACA
ATTCTCTCTATGGCAGCATCATAGGGTAAATAAAGTTGAGAGACGCCCTC
CTAGCCCCTGTTTCCAACCATGCCGGGGACTGAGAGCCCTCTGCAACTGC
TTGGCTATGGCCAAAATTTGGTTCGACAATGCAAAAGAGGGGAAGAAAGC
GGCGCACATAACAACCACAATGGGCTTCTGTCACACATACCTTGACCCTC
ACCTTTCCCCCAACCCACCCACACCAACAACGCCCTGTCTGTCCCTTCAC
AAGCACAGACTTAACTCACCCATTAAAACATGGTCGGCCAGATGAGAGTC
AGGGCATGCAGTGATGCTGGCAATGAATATGCACTCTGCAGCATTCTGAC
AGTCATCTACCAAGTGTGTTCAGTGCTTTACCCCCCTACTCTACTCTCTA
TGCGTTAGCATGTCATTTCTTTGCTTCAACCACCACCCAAACCACCGCGA
AAAAAAGAAGTCCAAGAGTCTGCTTGCCTGGACAGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10420:53..1038-

>mRNA_D-mesarthrocarpus_Contig10420.1.1 ID=mRNA_D-mesarthrocarpus_Contig10420.1.1|Name=mRNA_D-mesarthrocarpus_Contig10420.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=621bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10420:53..1038- (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGGTGGGGGGGTGGGCAGGCATGTGGTAGACACACATATCCCCCA
CCAGACCAGCGGGGGGTTTGAGTATAGCCAATGTATAGCTCTGACCCACC
AGGTTCCTGCCAATCCAACCAAACACGCCCCAAGCCTGTGTCCTGAGGTG
GCTGATAAAAAACCATGCACAACCATCAAATTTCGTGGGGATGGGAGGGA
GCAGGTGTACTACCAACGGCCAAGGGAAGAGCCAGATCTACAATTCTCTC
TATGGCAGCATCATAGGGTAAATAAAGTTGAGAGACGCCCTCCTAGCCCC
TGTTTCCAACCATGCCGGGGACTGAGAGCCCTCTGCAACTGCTTGGCTAT
GGCCAAAATTTGGTTCGACAATGCAAAAGAGGGGAAGAAAGCGGCGCACA
TAACAACCACAATGGGCTTCTGTCACACATACCTTGACCCTCACCTTTCC
CCCAACCCACCCACACCAACAACGCCCTGTCTGTCCCTTCACAAGCACAG
ACTTAACTCACCCATTAAAACATGTGATGCTGGCAATGAATATGCACTCT
GCAGCATTCTGACAGTCATCTACCAAGTGTGTTCAGTGCTTTACCCCCCT
ACTCTACTCTCTATGCGTTAG
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