mRNA_D-mesarthrocarpus_Contig10415.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10415.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10415.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10415.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10415contigD-mesarthrocarpus_Contig10415:2756..4324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G824
PFAMsC2,Rav1p_C
Model size1516
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.16e-07
EggNOG OGsKOG1064@1|root,KOG1064@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009650.1
Descriptionvacuolar proton-transporting V-type ATPase complex assembly
Cds size1392
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.392157-UTR-D-mesarthrocarpus_Contig10415:2755..27791680789180.392157-UTR-D-mesarthrocarpus_Contig10415:2755..2779Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10415 2756..2779 +
1680789180.4283187-UTR-D-mesarthrocarpus_Contig10415:4224..43241680789180.4283187-UTR-D-mesarthrocarpus_Contig10415:4224..4324Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10415 4225..4324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.403553-CDS-D-mesarthrocarpus_Contig10415:2779..38441680789180.403553-CDS-D-mesarthrocarpus_Contig10415:2779..3844Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10415 2780..3844 +
1680789180.4134376-CDS-D-mesarthrocarpus_Contig10415:3897..42241680789180.4134376-CDS-D-mesarthrocarpus_Contig10415:3897..4224Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10415 3898..4224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10415.2.1prot_D-mesarthrocarpus_Contig10415.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10415 2780..4224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10415.2.1

>prot_D-mesarthrocarpus_Contig10415.2.1 ID=prot_D-mesarthrocarpus_Contig10415.2.1|Name=mRNA_D-mesarthrocarpus_Contig10415.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=464bp
MRSRGGGEGGRAWTTDSLEALGMCNRAIDVASRPLLVERLGAQSPSCLLD
CPGVPRARNRAGGWRTAAAALTTAEYLSRHGMETSALDVLCCSGNWQSKA
PAAMGAEAGAGARTGEAEAEVGPRVGKGASSTCDPVGGMVDRGGGGEGGL
VSGEITGDMFSAFDAPVPRRVVAGQREGRGQGQGQGQAQSLDTDPLLSGE
LSGGIFGGFDAPSPSVAAAPAPAPAPAPSPSPPMSSSAIATGELGDMFGA
FDSPPQTKQRQEQWQYPEPLGAPAPSPSAPGLGESATTASAELGEGGLFG
GFDVTPPTPMQRKSWARAGVREATGDSRGTSTSASPARATVESGELTGDM
FGAFDWISRGKSGACGWGWGGAGQPGVWCSCDIQIWARGGDWEGGGGQPR
GRPWGQVWSLSRGAGATGGHSTVAEPLTVIAGQCLRPFWVSTRPPRPPHL
PVALIWVSGGGGT*
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mRNA from alignment at D-mesarthrocarpus_Contig10415:2756..4324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10415.2.1 ID=mRNA_D-mesarthrocarpus_Contig10415.2.1|Name=mRNA_D-mesarthrocarpus_Contig10415.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1569bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10415:2756..4324+ (Discosporangium mesarthrocarpum MT17_79)
CCGACTGTGGTGGCCTTTGCAGGCATGAGGAGCAGGGGAGGGGGGGAGGG
GGGGAGGGCCTGGACCACGGACTCCCTCGAGGCCCTGGGCATGTGCAACC
GCGCAATTGACGTGGCCTCCCGACCCCTGCTAGTGGAGCGCCTGGGGGCC
CAGAGCCCATCATGCCTCCTTGACTGCCCAGGGGTGCCCAGAGCCAGGAA
CAGAGCTGGTGGATGGAGGACAGCCGCGGCGGCCCTCACCACGGCAGAGT
ATCTGTCCCGACACGGGATGGAGACATCAGCGCTGGACGTCCTCTGCTGC
TCGGGCAACTGGCAGAGCAAGGCTCCGGCTGCGATGGGGGCGGAGGCAGG
GGCAGGGGCAAGGACAGGGGAGGCAGAGGCGGAGGTGGGCCCCAGGGTTG
GGAAGGGGGCGTCTTCTACCTGTGATCCGGTTGGTGGGATGGTGGACAGA
GGGGGGGGGGGTGAGGGGGGGCTGGTATCCGGCGAGATAACGGGAGACAT
GTTCTCGGCGTTTGATGCCCCGGTACCCCGGAGGGTAGTGGCAGGGCAGA
GAGAGGGGCGAGGGCAAGGGCAAGGGCAAGGGCAAGCCCAGAGCTTGGAC
ACCGACCCCCTGTTGTCAGGGGAGCTCTCTGGGGGGATATTCGGGGGTTT
CGATGCCCCGTCACCAAGTGTGGCTGCTGCCCCTGCCCCGGCTCCCGCCC
CTGCACCGTCGCCCTCCCCTCCAATGTCATCATCTGCTATTGCCACGGGA
GAGCTTGGCGACATGTTTGGTGCGTTCGACTCCCCCCCCCAGACCAAACA
GCGGCAGGAACAATGGCAGTATCCAGAGCCGCTTGGAGCCCCTGCACCGT
CGCCCTCGGCCCCGGGCCTGGGGGAGTCAGCGACGACGGCCTCTGCTGAG
CTTGGGGAAGGTGGGCTCTTTGGGGGGTTTGATGTGACCCCTCCCACGCC
CATGCAGCGGAAATCTTGGGCCAGGGCTGGGGTCAGGGAAGCTACAGGGG
ACTCCAGGGGGACCTCCACATCCGCCTCTCCAGCACGTGCCACTGTTGAA
TCGGGAGAGCTGACGGGGGACATGTTTGGGGCATTTGATGCGGCCCCCCG
CCCTCGCAGGTCCCCGACCCCTAGCTTGTTCTCCCAGGACAGTGGATCTC
GCGTGGGAAGTCCGGAGCCTGTGGGTGGGGCTGGGGGGGGGCTGGCCAGC
CTGGGGTTTGGTGTTCGTGTGATATCCAGATCTGGGCACGGGGTGGTGAT
TGGGAAGGAGGGGGAGGCCAGCCCAGGGGCCGCCCCTGGGGACAGGTCTG
GAGCCTATCTCGCGGGGCTGGGGCCACCGGTGGGCATAGCACAGTCGCGG
AGCCTCTCACTGTCATCGCTGGGCAATGCCTCAGACCTTTTTGGGTCTCA
ACAAGGCCCCCCCGGCCGCCCCACCTCCCTGTGGCTCTCATATGGGTATC
AGGAGGGGGAGGGACCTGAGTGGGGGGAGTACGATGAGTATGCTGAATGG
GCCTCCTCAGACTCGTCGGAGTCAGACTCGGAGGAGGGCGAGGGGGGGGA
GGGCAGCGTTGTCAGGAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10415:2756..4324+

>mRNA_D-mesarthrocarpus_Contig10415.2.1 ID=mRNA_D-mesarthrocarpus_Contig10415.2.1|Name=mRNA_D-mesarthrocarpus_Contig10415.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1392bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10415:2756..4324+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGGAGCAGGGGAGGGGGGGAGGGGGGGAGGGCCTGGACCACGGACTC
CCTCGAGGCCCTGGGCATGTGCAACCGCGCAATTGACGTGGCCTCCCGAC
CCCTGCTAGTGGAGCGCCTGGGGGCCCAGAGCCCATCATGCCTCCTTGAC
TGCCCAGGGGTGCCCAGAGCCAGGAACAGAGCTGGTGGATGGAGGACAGC
CGCGGCGGCCCTCACCACGGCAGAGTATCTGTCCCGACACGGGATGGAGA
CATCAGCGCTGGACGTCCTCTGCTGCTCGGGCAACTGGCAGAGCAAGGCT
CCGGCTGCGATGGGGGCGGAGGCAGGGGCAGGGGCAAGGACAGGGGAGGC
AGAGGCGGAGGTGGGCCCCAGGGTTGGGAAGGGGGCGTCTTCTACCTGTG
ATCCGGTTGGTGGGATGGTGGACAGAGGGGGGGGGGGTGAGGGGGGGCTG
GTATCCGGCGAGATAACGGGAGACATGTTCTCGGCGTTTGATGCCCCGGT
ACCCCGGAGGGTAGTGGCAGGGCAGAGAGAGGGGCGAGGGCAAGGGCAAG
GGCAAGGGCAAGCCCAGAGCTTGGACACCGACCCCCTGTTGTCAGGGGAG
CTCTCTGGGGGGATATTCGGGGGTTTCGATGCCCCGTCACCAAGTGTGGC
TGCTGCCCCTGCCCCGGCTCCCGCCCCTGCACCGTCGCCCTCCCCTCCAA
TGTCATCATCTGCTATTGCCACGGGAGAGCTTGGCGACATGTTTGGTGCG
TTCGACTCCCCCCCCCAGACCAAACAGCGGCAGGAACAATGGCAGTATCC
AGAGCCGCTTGGAGCCCCTGCACCGTCGCCCTCGGCCCCGGGCCTGGGGG
AGTCAGCGACGACGGCCTCTGCTGAGCTTGGGGAAGGTGGGCTCTTTGGG
GGGTTTGATGTGACCCCTCCCACGCCCATGCAGCGGAAATCTTGGGCCAG
GGCTGGGGTCAGGGAAGCTACAGGGGACTCCAGGGGGACCTCCACATCCG
CCTCTCCAGCACGTGCCACTGTTGAATCGGGAGAGCTGACGGGGGACATG
TTTGGGGCATTTGATTGGATCTCGCGTGGGAAGTCCGGAGCCTGTGGGTG
GGGCTGGGGGGGGGCTGGCCAGCCTGGGGTTTGGTGTTCGTGTGATATCC
AGATCTGGGCACGGGGTGGTGATTGGGAAGGAGGGGGAGGCCAGCCCAGG
GGCCGCCCCTGGGGACAGGTCTGGAGCCTATCTCGCGGGGCTGGGGCCAC
CGGTGGGCATAGCACAGTCGCGGAGCCTCTCACTGTCATCGCTGGGCAAT
GCCTCAGACCTTTTTGGGTCTCAACAAGGCCCCCCCGGCCGCCCCACCTC
CCTGTGGCTCTCATATGGGTATCAGGAGGGGGAGGGACCTGA
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