mRNA_D-mesarthrocarpus_Contig10415.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
|
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 8.250e-17 Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1
Query: 1 AEGASSGQRLERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
++GA+ GQRLE+LL+HDF S RGR+ + KNAY+LLRKR++ +AV VFLL RPAM+KEALQV
Sbjct: 1949 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAVAVFLLPRPAMVKEALQV 2009
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 2.870e-16 Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1
Query: 1 AEGASSGQRLERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
++GA+ GQRLE+LL+HDF S RGR+ + KNAY+LLRKR++ +A VFLL RPAM+KEALQV
Sbjct: 1858 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQV 1918
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS) HSP 1 Score: 57.0 bits (136), Expect = 7.380e-8 Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
L+ ++ HDF S RGR + KNAY LLRKR+Y A FLLA P M+K AL V
Sbjct: 1992 LKFIIDHDFSSERGRKAAEKNAYSLLRKRKYATAASFFLLAEPPMIKTALDV 2043
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S2UHS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHS1_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
L+ +L+HDF S +GR + KNAY LLRKRRY A FLLA P ML AL++
Sbjct: 130 LKFILNHDFSSLKGRKAAEKNAYSLLRKRRYGVAASFFLLAEPPMLNTALEI 181
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: K0SS84_THAOC (Rav1p_C domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS84_THAOC) HSP 1 Score: 55.5 bits (132), Expect = 2.520e-7 Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
L+ ++ HDF S RGR + KNAY LLRKR+Y A FLLA P M+K A+ V
Sbjct: 149 LKFIMDHDFSSDRGRKAAEKNAYSLLRKRKYAHAASFFLLAEPPMIKTAIDV 200
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S2KBJ0_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KBJ0_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 6.580e-7 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 16 SGQRLERLLS-HDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
SG++ + +S HDF S RGR + KNAY LLRKR+Y +A FLLA P M+K A+ V
Sbjct: 609 SGKKFFKFISDHDFSSDRGRNSAEKNAYSLLRKRKYASAASFFLLAEPPMIKSAVDV 665
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 8.070e-6 Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQVRCT 192
L+ + ++F S RGR + KNA+ LLRKR+Y AA FLLA P M+K AL + T
Sbjct: 608 LQFVTKYNFSSQRGRMAAEKNAFSLLRKRKYGAAAAFFLLAEPPMMKSALNIIVT 662
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S2EUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EUC3_9STRA) HSP 1 Score: 50.4 bits (119), Expect = 1.510e-5 Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query: 43 SHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQVRCT 192
++DF S RG+ + KNAY LLRKR+Y+AA FLL P ML AL V T
Sbjct: 1178 NYDFTSERGKKAAEKNAYSLLRKRKYLAAATFFLLPEPPMLNTALDVIVT 1227 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10415.1.1 >prot_D-mesarthrocarpus_Contig10415.1.1 ID=prot_D-mesarthrocarpus_Contig10415.1.1|Name=mRNA_D-mesarthrocarpus_Contig10415.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=66bp AEGASSGQRLERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLAback to top mRNA from alignment at D-mesarthrocarpus_Contig10415:201..398+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10415.1.1 ID=mRNA_D-mesarthrocarpus_Contig10415.1.1|Name=mRNA_D-mesarthrocarpus_Contig10415.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=198bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10415:201..398+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10415:201..398+ >mRNA_D-mesarthrocarpus_Contig10415.1.1 ID=mRNA_D-mesarthrocarpus_Contig10415.1.1|Name=mRNA_D-mesarthrocarpus_Contig10415.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=198bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10415:201..398+ (Discosporangium mesarthrocarpum MT17_79)back to top |