mRNA_D-mesarthrocarpus_Contig10415.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10415.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10415.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.250e-17
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 AEGASSGQRLERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
            ++GA+ GQRLE+LL+HDF S RGR+ + KNAY+LLRKR++ +AV VFLL RPAM+KEALQV
Sbjct: 1949 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAVAVFLLPRPAMVKEALQV 2009          
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.870e-16
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 AEGASSGQRLERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
            ++GA+ GQRLE+LL+HDF S RGR+ + KNAY+LLRKR++ +A  VFLL RPAM+KEALQV
Sbjct: 1858 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQV 1918          
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS)

HSP 1 Score: 57.0 bits (136), Expect = 7.380e-8
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
            L+ ++ HDF S RGR  + KNAY LLRKR+Y  A   FLLA P M+K AL V
Sbjct: 1992 LKFIIDHDFSSERGRKAAEKNAYSLLRKRKYATAASFFLLAEPPMIKTALDV 2043          
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S2UHS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHS1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
            L+ +L+HDF S +GR  + KNAY LLRKRRY  A   FLLA P ML  AL++
Sbjct:  130 LKFILNHDFSSLKGRKAAEKNAYSLLRKRRYGVAASFFLLAEPPMLNTALEI 181          
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: K0SS84_THAOC (Rav1p_C domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS84_THAOC)

HSP 1 Score: 55.5 bits (132), Expect = 2.520e-7
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
            L+ ++ HDF S RGR  + KNAY LLRKR+Y  A   FLLA P M+K A+ V
Sbjct:  149 LKFIMDHDFSSDRGRKAAEKNAYSLLRKRKYAHAASFFLLAEPPMIKTAIDV 200          
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S2KBJ0_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KBJ0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.580e-7
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   16 SGQRLERLLS-HDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQV 183
            SG++  + +S HDF S RGR  + KNAY LLRKR+Y +A   FLLA P M+K A+ V
Sbjct:  609 SGKKFFKFISDHDFSSDRGRNSAEKNAYSLLRKRKYASAASFFLLAEPPMIKSAVDV 665          
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 8.070e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   28 LERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQVRCT 192
            L+ +  ++F S RGR  + KNA+ LLRKR+Y AA   FLLA P M+K AL +  T
Sbjct:  608 LQFVTKYNFSSQRGRMAAEKNAFSLLRKRKYGAAAAFFLLAEPPMMKSALNIIVT 662          
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Match: A0A7S2EUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EUC3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.510e-5
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   43 SHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLARPAMLKEALQVRCT 192
            ++DF S RG+  + KNAY LLRKR+Y+AA   FLL  P ML  AL V  T
Sbjct: 1178 NYDFTSERGKKAAEKNAYSLLRKRKYLAAATFFLLPEPPMLNTALDVIVT 1227          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10415.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K928_9PHAE8.250e-1767.21PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G824_ECTSI2.870e-1665.57PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
B8CG37_THAPS7.380e-855.77Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2UHS1_9STRA1.870e-755.77Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
K0SS84_THAOC2.520e-753.85Rav1p_C domain-containing protein (Fragment) n=1 T... [more]
A0A7S2KBJ0_9STRA6.580e-752.63Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S3V901_9STRA8.070e-649.09Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A7S2EUC3_9STRA1.510e-554.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10415contigD-mesarthrocarpus_Contig10415:201..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G824
PFAMsC2,Rav1p_C
Model size198
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.7e-17
EggNOG OGsKOG1064@1|root,KOG1064@2759|Eukaryota
Descriptionvacuolar proton-transporting V-type ATPase complex assembly
Cds size198
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.4695222-CDS-D-mesarthrocarpus_Contig10415:200..3981680789180.4695222-CDS-D-mesarthrocarpus_Contig10415:200..398Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10415 201..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10415.1.1prot_D-mesarthrocarpus_Contig10415.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10415 201..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10415.1.1

>prot_D-mesarthrocarpus_Contig10415.1.1 ID=prot_D-mesarthrocarpus_Contig10415.1.1|Name=mRNA_D-mesarthrocarpus_Contig10415.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=66bp
AEGASSGQRLERLLSHDFRSSRGRAVSGKNAYILLRKRRYMAAVGVFLLA
RPAMLKEALQVRCTLL
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mRNA from alignment at D-mesarthrocarpus_Contig10415:201..398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10415.1.1 ID=mRNA_D-mesarthrocarpus_Contig10415.1.1|Name=mRNA_D-mesarthrocarpus_Contig10415.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=198bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10415:201..398+ (Discosporangium mesarthrocarpum MT17_79)
GCGGAAGGCGCCTCTTCTGGTCAGCGCCTGGAGCGCCTGCTCTCCCATGA CTTCCGGTCCTCACGGGGGAGGGCTGTATCTGGGAAGAATGCATACATCC TGCTGCGGAAGAGGAGGTACATGGCCGCTGTGGGTGTGTTTCTCCTCGCC CGCCCCGCCATGCTCAAGGAGGCCTTGCAGGTGCGCTGCACTCTCCTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10415:201..398+

>mRNA_D-mesarthrocarpus_Contig10415.1.1 ID=mRNA_D-mesarthrocarpus_Contig10415.1.1|Name=mRNA_D-mesarthrocarpus_Contig10415.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=198bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10415:201..398+ (Discosporangium mesarthrocarpum MT17_79)
GCGGAAGGCGCCTCTTCTGGTCAGCGCCTGGAGCGCCTGCTCTCCCATGA
CTTCCGGTCCTCACGGGGGAGGGCTGTATCTGGGAAGAATGCATACATCC
TGCTGCGGAAGAGGAGGTACATGGCCGCTGTGGGTGTGTTTCTCCTCGCC
CGCCCCGCCATGCTCAAGGAGGCCTTGCAGGTGCGCTGCACTCTCCTC
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