mRNA_D-mesarthrocarpus_Contig10414.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10414.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10414.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: W4G347_9STRA (RT_RNaseH_2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G347_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.940e-14
Identity = 54/169 (31.95%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    1 GVPLSSLLRLCKPVGVRRHTRWVRPTPTDKQRVDQVVFVLSIFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKSIPVP---KPQR-ASNKWFILKMISLLLLLTLGSCGVWFEVKIGNWPIVAVVTTARQQS-RARGDPVLRPVTVDGQKNKKIMIDEVIPAIKAK 492
            G+   SL R  K    R H+  +RP+ TD  +  ++ F  +          +DDM D+VH+DE+  WFY+ K  ++   VP   +PQR   +K FI K++ L  +    + G W++ KIG WP V  V   R  + RA G    + +TV     +  ++++V+PAI +K
Sbjct:    4 GISRGSLHRYLKLGIFRSHSNAIRPSLTDANKYSRMKFAFNFVRANM---EFDDMMDYVHLDEK--WFYITKTTRRYYLVPGAKEPQRMCKSKRFISKIMFLSAVARPDATGTWWDGKIGTWPFVESVQAQRNSANRAAGTYETKALTVTKDVYRAFLVEKVLPAIVSK 167          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: A0A6A4Z6I9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z6I9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.060e-12
Identity = 60/180 (33.33%), Postives = 96/180 (53.33%), Query Frame = 1
Query:    1 GVPLSSLLRLCKPVGVRRHTRWVRPTPTDKQRVDQVVFVLSIFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKSIPVP---KPQRAS-NKWFILKMISLLLLLTL---GSCGVWFEVKIGNWPIVAVVTTARQ-QSRARGDPVLRPVTVDGQKNKKIMIDEVIPAIKAKMPRLPSRT 516
            G+P S+L    K   + ++   ++P  TD  +V +V + +  F+       + DMFD+VHVDE+  WF+  K   +   +P    P R++ +K FI K++ L  +       +   WF+ KIG W    VV  AR  ++R  G   LRPV+V     KK++++ VIPAIKAK P+  +R+
Sbjct:  110 GIPASTLKDYYKRGLMVKYNSNIKPKLTDVNKVARVNWAMK-FVRPDSNFQFADMFDYVHVDEK--WFHATKIKSRVYLLPGEVPPHRSTQSKHFITKVMFLSAVARPRWDDAKSEWFDGKIGTWHFTQVVPAARSSRNRPAGTLELRPVSVTRPIYKKMLLENVIPAIKAKWPQDSTRS 286          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: W4GWE0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWE0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.000e-12
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   52 RHTRWVRPTPTDKQRVDQVVFVLS-IFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKSIPVP---KPQRA-SNKWFILKMISLLLLLT---LGSCGVWFEVKIGNWPIVAVVTTARQ-QSRARGDPVLRPVTVDGQKNKKIMIDEVIPAIKAKMPRLPSR 513
            ++T  VRP  TD  +  +V +V+  +    +   ++DDM + VHVDE+  WF+  K +KK    P    P R   +K +I K++ L  +     +     WF+ KIG W     V   R  ++RA G  V +PV+V     +K++ID VIPAIKAK PR  SR
Sbjct:   71 KYTSTVRPLLTDANKAVRVQWVMKHLHALSSAQYAFDDMMNTVHVDEK--WFFATKISKKMYLAPGEEPPHRTCKSKRYITKVMFLSAVARPRWVDDEVGWFDGKIGTWHFTERVPAERSSRNRAAGTLVTKPVSVTQDIYRKMLIDNVIPAIKAKWPRNSSR 231          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: A0A4Q9LLI7_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LLI7_9MICR)

HSP 1 Score: 72.0 bits (175), Expect = 5.090e-11
Identity = 55/162 (33.95%), Postives = 93/162 (57.41%), Query Frame = 1
Query:   46 VRRHTRWVRPTPTDKQRVDQVVFVLS-IFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKS----IPVPKPQRA-SNKWFILKMISLLLLLTL---GSCGVWFEVKIGNWPIVAVVTTARQ-QSRARGDPVLRPV-TVDGQKNKKIMIDEVIPAIKAKMP 498
            ++R +  V+PT TDK ++D++ F LS + +   G   +DD++D+VH+DE+  WFY+ K  K+S    +   +P+R   +K FI+K++ +  +           +F+ KIG WP V      R  ++RA+G  + + V +V     K ++ID VIPAIK+K P
Sbjct:  119 MKRISSTVKPTLTDKNKMDRLKFCLSKVNLANNGDFLFDDLYDYVHIDEK--WFYLTK-VKRSYYLMLNEEEPERNYKSKRFIMKIMFMAAVARPRYDAHRKNYFDGKIGIWPFVYQEPAQRNSKNRAKGTMITKNVESVTAVHCKNMIIDNVIPAIKSKFP 277          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: A0A4Q9LWQ4_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LWQ4_9MICR)

HSP 1 Score: 70.9 bits (172), Expect = 5.490e-11
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   67 VRPTPTDKQRVDQVVFVLS-IFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKS----IPVPKPQR-ASNKWFILKMISLLLLLTL---GSCGVWFEVKIGNWPIVAVVTTARQ-QSRARGDPVLRPV-TVDGQKNKKIMIDEVIPAIKAKMP 498
            V+PT TDK ++D++ F LS + +   G   +DD++D+VH+DE+  WFY+ K  K+S    +    P+R   +K FI K++ +  +          ++F+ KIG WP V      R  ++RA+G  + + V +V     K ++ID VIPAIK+K P
Sbjct:   93 VKPTLTDKNKMDRLKFCLSKVNLANNGDLLFDDLYDYVHIDEK--WFYLTK-VKRSYYLMLNEENPERNCKSKRFITKIMFMAAVARPRYDAHRKLYFDGKIGIWPFVYQEPARRNSKNRAKGTMITKNVESVAAVHCKNMIIDNVIPAIKSKFP 244          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: W4G370_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G370_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.570e-10
Identity = 46/153 (30.07%), Postives = 77/153 (50.33%), Query Frame = 1
Query:   52 RHTRWVRPTPTDKQRVDQVVFVLSIFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKSIPVPKPQRASNKWFILKMISLLLLLTLG---SCGVWFEVKIGNWPIVAVVTTARQQSRA-RGDPVLRPVTVDGQKNKKIMIDEVIPAIKAKMP 498
            +++  ++P  T+  +V ++ + L       G   +DDM+D VHVDE+  WF+M              R   K  +LK++ L  +       + G WF+ K+G W    +V   R+  R   G PV+  V+V  +  K +++D+VIPAI+AK P
Sbjct:   99 KYSSVLKPALTESNKVCRLKWALDHVCDRDGAKYFDDMYDTVHVDEK--WFFM-------------NRVQKKHHLLKVMFLTAVAHPRWDETSGKWFDGKLGTWHFTEIVPAQRRSGRRDAGTPVMTTVSVTRETYKAMLVDKVIPAIRAKWP 236          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: A0A3R7C3A1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7C3A1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.710e-10
Identity = 47/157 (29.94%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   52 RHTRWVRPTPTDKQRVDQVVFVLSIFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKSIPVP---KPQRASNKWFILKMISLLLLLTLG---SCGVWFEVKIGNWPIVAVVTTARQQSRA-RGDPVLRPVTVDGQKNKKIMIDEVIPAIKAKMPR 501
            +++  ++P  T+  +V ++ + L       G    DDM+D VHVDE+  WF+M +  K    +    K +   +K  +LK++ L  +       + G WF   +G W    +V   R+  R   G PV+  V+V  +  K +++D+VIPAI+AK PR
Sbjct:   82 KYSSVLKPALTESNKVCRLKWALDHVCDRDGAKYVDDMYDTVHVDEK--WFFMTRVQKVYGAICEKIKQRSCKSKHHLLKVMFLTAVAHPRWDETSGEWFNGNLGTWHFTEIVPAQRRSGRRDAGTPVMTTVSVTRETYKAMLVDKVIPAIRAKWPR 236          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: V9ERX1_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=V9ERX1_PHYPR)

HSP 1 Score: 69.7 bits (169), Expect = 3.420e-10
Identity = 57/178 (32.02%), Postives = 88/178 (49.44%), Query Frame = 1
Query:    1 GVPLSSLLRLCKPVGVRRHTRWVRPTPTDKQRVDQVVFVLSIFIGGA-GVGSWDDMFDWVHVDERSGWFYMMK--------DAKKSIPVPKP--QRASNKWFILKMISLLLLLTLGSCGVWFEVKIGNWPIVAV-VTTARQQSRARGDPVLRPVTVDGQKNKKIMIDEVIPAIKAKMP 498
            GV    + +L K   +RR  R  RP  T   R+ ++ F +   I    G   +D M D VH+DE+  WFY+ K          K   P  +P  Q   +K +I K++ L  +      G W + K+G WP+V   +T  R  +R  G    RPV++    +++I++++VIPAIKAK P
Sbjct:   89 GVSSYLVQQLIKEGFLRRALRQTRPLLTPSHRLRRLRFCMDHVIPQLDGTYKFDAMHDVVHIDEK--WFYVEKIGQHVYVLTGKDGCPTEEPPVQDVQSKRYITKVMFLCAVAR--PRGGW-DGKVGIWPVVETYITQRRSVNRPAGVEETRPVSITRDISRRILVNDVIPAIKAKWP 261          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.960e-10
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   52 RHTRWVRPTPTDKQRVDQVVFVLS-IFIGGAGVGSWDDMFDWVHVDERSGWFYMMKDAKKSIPVP---KPQRA-SNKWFILKMISLLLLLTL---GSCGVWFEVKIGNWPIVAVVTTAR-QQSRARGDPVLRPVTVDGQKNKKIMIDEVIPAIKAKMP 498
            ++T  VRP  T+  +  +V + +  I     G  ++DDM ++VHVDE+  WF+  + +K+    P    P R   +K FI K++ L  +         G WF+ KIG W     V  AR  ++R  G    +PV+V     K ++ID+VIP IK+K P
Sbjct:  137 KYTSTVRPMLTEANKAVRVGWAMGLIHASDHGEYTFDDMMEYVHVDEK--WFFATRVSKRYYLAPGEAPPHRTCKSKRFISKVMFLSAVARPRLNDDTGEWFDGKIGTWHFTEKVAAARTSRNRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWP 292          
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Match: A0A6A4Z848_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z848_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.610e-9
Identity = 56/179 (31.28%), Postives = 96/179 (53.63%), Query Frame = 1
Query:    1 GVPLSSLLRLCKP-VGVRRHTRWVRPTPTDKQRVDQVVFVLSIFIGGAGVGS-WDDMFDWVHVDERSGWFYMMKDAKKSI----PVPKPQRASNKWFILKMISLLLLLTL-----GSCGVWFEVKIGNWPIVAVVTTARQ-QSRARGDPVLRPVTVDGQKNKKIMIDEVIPAIKAKMPR 501
            G+P ++++R  K    ++  + + +P  TD  +V ++   LS FI     G+ + +M ++VHVDE+  WF++    K+       V   +   +K FI K++ L  +          C   F+ KIG WP V  V   R  ++R +G P+L P +V+ +  +K+++D V+PAIKAKMPR
Sbjct:  121 GIPKTTIVRHMKVNPKLKAMSSYSKPMLTDDNKVQRMKHALS-FIPTLSKGTIFGNMNNFVHVDEK--WFFLTTVKKRYYLYEDEVLPTRFLKSKRFITKVMFLAAVARPCYDHHKKCH--FDGKIGVWPFVKPVEAKRNSKNRPKGTPLLAPESVNAEVYRKMIVDNVVPAIKAKMPR 294          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10414.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4G347_9STRA8.940e-1431.95RT_RNaseH_2 domain-containing protein n=1 Tax=Apha... [more]
A0A6A4Z6I9_9STRA1.060e-1233.33Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4GWE0_9STRA9.000e-1235.58Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A4Q9LLI7_9MICR5.090e-1133.95Uncharacterized protein (Fragment) n=1 Tax=Hamilto... [more]
A0A4Q9LWQ4_9MICR5.490e-1134.84Uncharacterized protein (Fragment) n=1 Tax=Hamilto... [more]
W4G370_9STRA1.570e-1030.07Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R7C3A1_9STRA1.710e-1029.94Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
V9ERX1_PHYPR3.420e-1032.02Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A6A4YXI9_9STRA6.960e-1032.91Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4Z848_9STRA1.610e-931.28Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10414contigD-mesarthrocarpus_Contig10414:2402..3124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4792.ETI40837
Model size707
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons2
Evalue2.15e-11
EggNOG OGs2CTB4@1|root,2RFQE@2759|Eukaryota,3QH57@4776|Peronosporales
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.3280127-UTR-D-mesarthrocarpus_Contig10414:2401..25351680789180.3280127-UTR-D-mesarthrocarpus_Contig10414:2401..2535Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10414 2402..2535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.3369064-CDS-D-mesarthrocarpus_Contig10414:2535..28711680789180.3369064-CDS-D-mesarthrocarpus_Contig10414:2535..2871Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10414 2536..2871 -
1680789180.3464663-CDS-D-mesarthrocarpus_Contig10414:2887..31241680789180.3464663-CDS-D-mesarthrocarpus_Contig10414:2887..3124Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10414 2888..3124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10414.2.1prot_D-mesarthrocarpus_Contig10414.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10414 2536..3124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10414.2.1

>prot_D-mesarthrocarpus_Contig10414.2.1 ID=prot_D-mesarthrocarpus_Contig10414.2.1|Name=mRNA_D-mesarthrocarpus_Contig10414.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=191bp
GVPLSSLLRLCKPVGVRRHTRWVRPTPTDKQRVDQVVFVLSIFIGGAGVG
SWDDMFDWVHVDERSGWFYMMKDAKKSIPVPKPQRASNKWFILKMISLLL
LLTLGSCGVWFEVKIGNWPIVAVVTTARQQSRARGDPVLRPVTVDGQKNK
KIMIDEVIPAIKAKMPRLPSRTRRKGSWRPFRQRLGTALY*
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mRNA from alignment at D-mesarthrocarpus_Contig10414:2402..3124-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10414.2.1 ID=mRNA_D-mesarthrocarpus_Contig10414.2.1|Name=mRNA_D-mesarthrocarpus_Contig10414.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=723bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10414:2402..3124- (Discosporangium mesarthrocarpum MT17_79)
GGGGTCCCCCTCTCCTCGCTGTTGCGCTTGTGCAAGCCCGTGGGGGTGCG GAGGCACACCAGGTGGGTAAGGCCGACCCCCACCGACAAGCAGAGGGTGG ATCAGGTGGTTTTTGTCCTGAGCATCTTCATAGGAGGGGCGGGAGTGGGG TCTTGGGACGACATGTTCGACTGGGTCCATGTGGACGAGAGAAGTGGTTG GTTCTACATGATGAAGGATGCAAAAAAAAGTATACCTGTAACAGGACAAT TAGGTCCCCAAGCCCCAGAGGGCGTCAAACAAATGGTTCATCCTTAAGAT GATTTCCTTGCTGCTGTTGCTCACCCTAGGAAGCTGTGGGGTATGGTTTG AAGTGAAGATCGGAAACTGGCCAATTGTTGCCGTGGTCACCACAGCGCGC CAGCAAAGCCGTGCCAGGGGAGACCCTGTCCTAAGGCCAGTCACGGTGGA CGGCCAAAAGAACAAGAAGATAATGATCGATGAGGTCATCCCCGCCATCA AGGCCAAGATGCCTAGGCTGCCAAGCCGCACACGAAGAAAGGGATCATGG AGGCCATTCAGGCAGAGGCTGGGAACAGCATTATACTAGAGACCCAACCT TCCAACCCTTGCAACCTCAACGTGAACGATCTTGGCTTCTTCCACTCCAT CCAGCAGCTGAAGGATGACGTGGAAGTGACCACTCCTGAGGGGCTGGTGG AGGCCACGCTCGAGGCCTTCGAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10414:2402..3124-

>mRNA_D-mesarthrocarpus_Contig10414.2.1 ID=mRNA_D-mesarthrocarpus_Contig10414.2.1|Name=mRNA_D-mesarthrocarpus_Contig10414.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=573bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10414:2402..3124- (Discosporangium mesarthrocarpum MT17_79)
GGGGTCCCCCTCTCCTCGCTGTTGCGCTTGTGCAAGCCCGTGGGGGTGCG
GAGGCACACCAGGTGGGTAAGGCCGACCCCCACCGACAAGCAGAGGGTGG
ATCAGGTGGTTTTTGTCCTGAGCATCTTCATAGGAGGGGCGGGAGTGGGG
TCTTGGGACGACATGTTCGACTGGGTCCATGTGGACGAGAGAAGTGGTTG
GTTCTACATGATGAAGGATGCAAAAAAAAGTATACCTGTCCCCAAGCCCC
AGAGGGCGTCAAACAAATGGTTCATCCTTAAGATGATTTCCTTGCTGCTG
TTGCTCACCCTAGGAAGCTGTGGGGTATGGTTTGAAGTGAAGATCGGAAA
CTGGCCAATTGTTGCCGTGGTCACCACAGCGCGCCAGCAAAGCCGTGCCA
GGGGAGACCCTGTCCTAAGGCCAGTCACGGTGGACGGCCAAAAGAACAAG
AAGATAATGATCGATGAGGTCATCCCCGCCATCAAGGCCAAGATGCCTAG
GCTGCCAAGCCGCACACGAAGAAAGGGATCATGGAGGCCATTCAGGCAGA
GGCTGGGAACAGCATTATACTAG
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