mRNA_D-mesarthrocarpus_Contig1040.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1040.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig1040.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.270e-12
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +PQ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +ALN     ANP +K+P+E++ G++ P +  PFLKP
Sbjct:  426 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKP 511
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.870e-12
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:  427 QLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            Q +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +A+N +   ANP + +P+E++ G+  P +  PFLKP
Sbjct:   78 QYNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDKLWAEAMHWACEAMNHIACFANPDSMSPYEMWYGEPRPARPYPFLKP 161
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.960e-12
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +P+ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +ALN     ANP +K+P+E++ G++ P +  PFLKP
Sbjct:  573 SPEFNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKP 658
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.010e-12
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +P+ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +ALN     ANP +K+P+E++ G++ P +  PFLKP
Sbjct:  549 SPEFNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKP 634
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.010e-12
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +PQ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +A+N     ANP +K+P+E++ G+  P +  PFLKP
Sbjct:  822 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYPFLKP 907
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.060e-12
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +PQ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +A+N     ANP +K+P+E++ G+  P +  PFLKP
Sbjct:  529 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYPFLKP 614
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.820e-11
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +PQ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +A+N     ANP + +P+E++ G+  P +  PFLKP
Sbjct:  410 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPFLKP 495
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.220e-11
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +PQ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +A+N     ANP + +P+E++ G+  P +  PFLKP
Sbjct:   76 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPFLKP 161
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.360e-11
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +PQ +GVA RGLG++++  + AR+ A  L+ H + LP  + LWA+A   A +A+N     ANP + +P+E++ G+  P +  PFLKP
Sbjct:  343 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGH-VQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPFLKP 428
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Match: A0A6H5K148_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K148_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-11
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  421 TPQLDGVA*RGLGMVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANPGNKTPHELFLGKSAPLKLLPFLKP 681
            +PQ +GVA RGLG+++   +  R+ A  L+ H + LP  + LWA+A   A +A+N     ANP  ++PHE++ G+++P +  PFLKP
Sbjct:  102 SPQYNGVAERGLGLIEAAAMATRIQAKVLFGH-VQLPKTDRLWAEAMHWAWEAINHTACSANPDRRSPHEMWHGQASPARPHPFLKP 187
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1040.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB16_9PHAE1.270e-1242.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKD1_9PHAE2.870e-1240.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE2.960e-1241.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE3.010e-1241.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE4.010e-1241.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE4.060e-1241.38Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.820e-1140.23Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE2.220e-1140.23Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE2.360e-1140.23Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K148_9PHAE2.500e-1140.23Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1040contigD-mesarthrocarpus_Contig1040:14508..15395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size888
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.2058427-UTR-D-mesarthrocarpus_Contig1040:14507..146721680789179.2058427-UTR-D-mesarthrocarpus_Contig1040:14507..14672Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1040 14508..14672 -
1680789179.2328942-UTR-D-mesarthrocarpus_Contig1040:14936..153951680789179.2328942-UTR-D-mesarthrocarpus_Contig1040:14936..15395Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1040 14937..15395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.2238424-CDS-D-mesarthrocarpus_Contig1040:14672..149361680789179.2238424-CDS-D-mesarthrocarpus_Contig1040:14672..14936Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1040 14673..14936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1040.8.1prot_D-mesarthrocarpus_Contig1040.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1040 14673..14936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1040.8.1

>prot_D-mesarthrocarpus_Contig1040.8.1 ID=prot_D-mesarthrocarpus_Contig1040.8.1|Name=mRNA_D-mesarthrocarpus_Contig1040.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=88bp
MVKQLQLYARLMANELYSHAIDLPPHEDLWADACLRATDALNRVITVANP
GNKTPHELFLGKSAPLKLLPFLKPIQSTNEAGPQDRS*
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mRNA from alignment at D-mesarthrocarpus_Contig1040:14508..15395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1040.8.1 ID=mRNA_D-mesarthrocarpus_Contig1040.8.1|Name=mRNA_D-mesarthrocarpus_Contig1040.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=888bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1040:14508..15395- (Discosporangium mesarthrocarpum MT17_79)
ACCTGTTCCATTGCTCTTGCGGTCATGCTAACGAGGTCACACTGCGTCGG
ACGGCGAATTCAAAGGGTATCATGCTCATGGGATCTCTTACAACCTGCTC
GAGGTGTGCTATGGGCGAGAGCATTCGATCACGCATCCGATCTTCAACAA
CCACACGAGCGCTGAGACCCTTGGAGCGTATATTCATGGACTAGATGTCA
TAGTCCGTGACGACTAGTCAAGGTTCACGAGGGCTTTCCCCTCAAGGGTC
AAGTCAGATGCCTACACTGCTCTTGAACGTTTTCCGGCGGAATGCAACAC
CCTTAAAGCCAATCACGTTCTCTGGAGGGTTCGGTCCGATGACGGGGGGG
AGTTTCTACTCGGACGGTTCAGTGATCTTTGTGTGAACGTTCGCATCTGT
CAAGAACACACCACTGCAGCACCCCCCAATTAGATGGGGTGGCTTAGAGG
GGACTAGGCATGGTCAAGCAGTTGCAACTATATGCTCGACTAATGGCCAA
TGAACTCTACTCGCATGCGATTGATCTCCCTCCCCACGAGGACCTGTGGG
CTGACGCATGCCTTAGGGCTACTGACGCTCTTAACCGCGTAATCACTGTT
GCTAATCCAGGCAATAAGACTCCACATGAGTTGTTCCTCGGCAAATCAGC
TCCACTTAAGCTCTTGCCATTTCTCAAACCGATTCAGTCGACTAATGAGG
CCGGTCCGCAAGACAGATCCTAGAGGAGAACCGTGTTTTTAAATGGGGTC
AGGGATCAATCACTCAAGCTCTTCAATGCGACTACTCTTGCTTAATCCCC
CAAGGGTCATAATAACTTGGAACGTCTCGTTCCGAGAGGTCCCTCCACGA
TGCACACCCATTCGTCCTCTCGGATCTGTGACTTCCCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1040:14508..15395-

>mRNA_D-mesarthrocarpus_Contig1040.8.1 ID=mRNA_D-mesarthrocarpus_Contig1040.8.1|Name=mRNA_D-mesarthrocarpus_Contig1040.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=264bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1040:14508..15395- (Discosporangium mesarthrocarpum MT17_79)
ATGGTCAAGCAGTTGCAACTATATGCTCGACTAATGGCCAATGAACTCTA
CTCGCATGCGATTGATCTCCCTCCCCACGAGGACCTGTGGGCTGACGCAT
GCCTTAGGGCTACTGACGCTCTTAACCGCGTAATCACTGTTGCTAATCCA
GGCAATAAGACTCCACATGAGTTGTTCCTCGGCAAATCAGCTCCACTTAA
GCTCTTGCCATTTCTCAAACCGATTCAGTCGACTAATGAGGCCGGTCCGC
AAGACAGATCCTAG
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