mRNA_D-mesarthrocarpus_Contig1040.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1040.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig1040.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 4.860e-81
Identity = 155/407 (38.08%), Postives = 225/407 (55.28%), Query Frame = 3
Query:  582 GEGVQPTI-----RLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGR--GLEL---V*PPLQALPMQETEQTDVLFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHIST 1763
            GE   PT+     RLLAA A E N  + H D +QAF+Q+D+D +V+++LP+GC  LS  + +LN++LY LKQASR W+    + L+ LGF Q  AD C FR +    V + + VHV+ I  +G  E CD   + L+   P  N+  L  Y+GC +  DW+ G L ISQ  +  +L   F V      P     K     +DE      FRELIG L+W    TRPDI+N+VR++A+Y   P E HW+  + +L Y+  + + GI   +G   GL +   V     +        +  L   G   + W      + Q+   LST+E  Y+++ +V +E LF+  V  FM P+ G+P    V+EDN+GAI LA+NP S   +KH DVRHHF+R+LV  K+ISI+H+ +
Sbjct:    9 GETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFS----RTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPC-IPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVES 410          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 4.490e-79
Identity = 155/407 (38.08%), Postives = 225/407 (55.28%), Query Frame = 3
Query:  582 GEGVQPTI-----RLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGR--GLEL---V*PPLQALPMQETEQTDVLFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHIST 1763
            GE   PT+     RLLAA A E N  + H D +QAF+Q+D+D +V+++LP+GC  LS  + +LN++LY LKQASR W+    + L+ LGF Q  AD C FR +    V + + VHV+ I  +G  E CD   + L+   P  N+  L  Y+GC +  DW+ G L ISQ  +  +L   F V      P     K     +DE      FRELIG L+W    TRPDI+N+VR++A+Y   P E HW+  + +L Y+  + + GI   +G   GL +   V     +        +  L   G   + W      + Q+   LST+E  Y+++ +V +E LF+  V  FM P+ G+P    V+EDN+GAI LA+NP S   +KH DVRHHF+R+LV  K+ISI+H+ +
Sbjct:  183 GETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFS----RTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPC-IPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVES 584          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.120e-78
Identity = 156/407 (38.33%), Postives = 226/407 (55.53%), Query Frame = 3
Query:  582 GEGVQPTI-----RLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQG--RGLELV*PPLQALPMQETEQTDV---LFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHIST 1763
            GE   PT+     RLLAA A E N ++ H D +QAF+Q+++D +V+++LPQGC  LS  + +L ++LY LKQASR W+    + LL LGF Q  AD C FR +    V +++ VHV+ I  VG  E CD   + L+   P  N+  L  Y+ C +  D ERG L ISQ  F  +L   + +      P   + K     E+E      FREL+G L+W    TRPDI+N+VR++A+Y   P   HWK A+ +L Y+  +   GI  E+G   G+ +          + T++  V   L   G   + W      + Q+   LST+E  Y+A+ +V +E LF+  V  FM P  G+P    V+EDN+GAI +A NP +   +KH DVRHHF+R+LV+ K+ISI H+ T
Sbjct:    9 GELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFS----RTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPC-IPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPT 410          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 3.070e-78
Identity = 150/398 (37.69%), Postives = 224/398 (56.28%), Query Frame = 3
Query:  588 GVQPTIRLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQG--RGLELV*PPLQALPMQETEQTDV---LFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHI 1757
            G     ++LAA A E N ++ H D EQAF++++++ +VY++LPQGC  LS  + +L ++LY L+QASR W+    + L+ LGF+Q  AD C FR + +  V L++ VHV+ I  VG  E CD     L+   P  N+  L  Y+GC +  + E G+L ISQ  F ++L   + V      P ++  K      DE A    FREL+G L+W    TRPDI+N+VR++A+Y   P   HW  A+ +L Y   +   GI  ++G   G  L          +  ++  V   +   G   + W      + Q+   LST+E  Y+A+G+V +E LF+  +  FM PQ G+P    V+EDN+GAI LA+NP S   +KH DVRHHFLR+LV+ K+IS+ H+
Sbjct:   40 GTFTPAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFS----RTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPC-IPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 432          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 1.430e-75
Identity = 155/407 (38.08%), Postives = 225/407 (55.28%), Query Frame = 3
Query:  582 GEGVQPTI-----RLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGR--GLEL---V*PPLQALPMQETEQTDVLFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHIST 1763
            GE   PT+     RLLAA A E N  + H D +QAF+Q+D+D +V+++LP+GC  LS  + +LN++LY LKQASR W+    + L+ LGF Q  AD C FR +    V + + VHV+ I  +G  E CD   + L+   P  N+  L  Y+GC +  DW+ G L ISQ  +  +L   F V      P     K     +DE      FRELIG L+W    TRPDI+N+VR++A+Y   P E HW+  + +L Y+  + + GI   +G   GL +   V     +        +  L   G   + W      + Q+   LST+E  Y+++ +V +E LF+  V  FM P+ G+P    V+EDN+GAI LA+NP S   +KH DVRHHF+R+LV  K+ISI+H+ +
Sbjct:  704 GETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFS----RTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPC-IPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVES 1105          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 1.620e-75
Identity = 149/394 (37.82%), Postives = 229/394 (58.12%), Query Frame = 3
Query:  600 TIRLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGRGLEL-----V*PPLQALPMQETEQTDVLFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHI 1757
            +IRL+ A A + N E++HLD EQAF Q+ +D EV +KLP GC+ +S  + RLN++LY LKQASR +    +  LL +GF+QS +DPC  R +   +V  ++ +HV+ I+  GT    + + + L    PT N+  +  + GC F  D E G + ISQ ++I  + ERF++C +S  PA+         EDE AG   FRE++G L+W  N TRP+ SN+VR++A++S +P +  WK A ++L YL  +    + ++Q   +++     V     +        +  L  V    + W        Q+  +LSTSE  Y+AMG+  +EALFV+ +L  ++P    P    V+EDN+GAI LA+NP S+ R+KH DVRHHFLR+L +   I + H+
Sbjct:  306 SIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFS----WTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPS-AKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHV 694          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 2.320e-75
Identity = 150/392 (38.27%), Postives = 229/392 (58.42%), Query Frame = 3
Query:  606 RLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGRGLEL-----V*PPLQALPMQETEQTDVLFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHI 1757
            RL+ A A + N E++H D EQAF+Q+++D EV++KLP GC  +S  V RLN++LY LKQASR +    +  L  +GF+QS +DPC  R +   +V  +V +HV+ I+  GT    + +   L    PT N+  +  + GC F+ D E G + +SQ ++I  + ERF+VC +S  PA+    +    EDEGAG   FRE++G L+W  N TRPDISN+VR++A++S +P + HWK A ++L YL  +    +  +    ++      V     +        +  +  V    + W+     + Q+  + STSE  Y+AMG+  +EALFV+ +L F++P    P    V EDN+GAI LA+NP S+ R+KH DVRHHFLR+L +   I + H+
Sbjct:  543 RLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWIS----KTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPS-AKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHV 929          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 8.400e-75
Identity = 145/396 (36.62%), Postives = 232/396 (58.59%), Query Frame = 3
Query:  600 TIRLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGRGLEL-----V*PPLQALPMQETEQTDVLFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHIST 1763
            +IRLL A A + + E +H D EQAF+Q+++D EV++KLP GCE ++  V RL+++LY L+QASR ++   +  L  +GF+QS +DPC    +   +V  ++ +HV+ I+  G     + + + L    PT N+  +  + GC F  D E G + +SQ ++I  + ERF+VC +S  PA+    +    EDEGAG   FR+++G L+W  N TRPDISN+VR++A++S +P++ HWK A ++L YL  +    + ++Q   +++     V     +        +  L  V    + W+     + Q+   LST+E  Y+AMG+  +EALFV  +L F++P   I     V EDN+GAI LA+NP S+  +KH DVRHH  R+L +   + I H+S+
Sbjct:  242 SIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWIS----RTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGK-IQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSS 632          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 2.990e-74
Identity = 150/392 (38.27%), Postives = 229/392 (58.42%), Query Frame = 3
Query:  606 RLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGRGLEL-----V*PPLQALPMQETEQTDVLFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHI 1757
            RL+ A A + N E++H D EQAF+Q+++D EV++KLP GC  +S  V RLN++LY LKQASR +    +  L  +GF+QS +DPC  R +   +V  +V +HV+ I+  GT    + +   L    PT N+  +  + GC F+ D E G + +SQ ++I  + ERF+VC +S  PA+    +    EDEGAG   FRE++G L+W  N TRPDISN+VR++A++S +P + HWK A ++L YL  +    +  +    ++      V     +        +  +  V    + W+     + Q+  + STSE  Y+AMG+  +EALFV+ +L F++P    P    V EDN+GAI LA+NP S+ R+KH DVRHHFLR+L +   I + H+
Sbjct:  810 RLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWIS----KTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPS-AKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHV 1196          
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 9.900e-73
Identity = 149/398 (37.44%), Postives = 224/398 (56.28%), Query Frame = 3
Query:  588 GVQPTIRLLAAFANETNREMVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRCWNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMII-VGTHEDCDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCERFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDISNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQG--RGLELV*PPLQALPMQETEQTDV---LFPVGL*FLGWLR*LCFQGQRNAALSTSE--YMAMGEVFREALFVSNVLVFMQPQYGIPVGTCVYEDNKGAIDLAKNPFSTVRTKHSDVRHHFLRDLVQSKDISIYHI 1757
            G     ++LAA A E N ++ H D EQAF++++++ +VY++LPQGC  LS  + +L ++LY L+QASR W+    + L+ LGF+Q  AD C FR + +  V L++ VHV+ I  VG  E CD     L+   P  N+  L  Y+GC +  + E G+L ISQ  F ++L   + V      P ++  K      DE A    FREL+G L+W    TRPDI+N+VR++A+Y   P   HW  A+ +L Y   +   GI  ++G   G  L          +  ++  V   +   G   + W      + Q+   LST+E  Y+A+G+V +E LF+  +  FM PQ G+P    ++EDN+GAI LA+NP S   +KH DVRHHFLR+LV+ K+IS+ H+
Sbjct:  870 GTFTPAKMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFS----RTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPC-IPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 1262          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1040.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE4.860e-8138.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE4.490e-7938.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE1.120e-7838.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE3.070e-7837.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.430e-7538.08Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JV80_9PHAE1.620e-7537.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE2.320e-7538.27Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KN43_9PHAE8.400e-7536.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE2.990e-7438.27Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JG40_9PHAE9.900e-7337.44Integrase catalytic domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1040contigD-mesarthrocarpus_Contig1040:12424..14186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra71619
Model size1763
Max annot lvl164328.Phyra71619|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-31
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHW0@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size747
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.148076-UTR-D-mesarthrocarpus_Contig1040:12423..127951680789179.148076-UTR-D-mesarthrocarpus_Contig1040:12423..12795Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1040 12424..12795 -
1680789179.16697-UTR-D-mesarthrocarpus_Contig1040:13542..141861680789179.16697-UTR-D-mesarthrocarpus_Contig1040:13542..14186Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1040 13543..14186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.1576133-CDS-D-mesarthrocarpus_Contig1040:12795..135421680789179.1576133-CDS-D-mesarthrocarpus_Contig1040:12795..13542Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1040 12796..13542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1040.7.1prot_D-mesarthrocarpus_Contig1040.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1040 12796..13542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1040.7.1

>prot_D-mesarthrocarpus_Contig1040.7.1 ID=prot_D-mesarthrocarpus_Contig1040.7.1|Name=mRNA_D-mesarthrocarpus_Contig1040.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=249bp
MVHLDAEQAFIQADIDTEVYVKLPQGCEELSNTVDRLNRALYNLKQASRC
WNDSFIQVLLFLGFDQSKADPCFFRDVRNYDVDLLVTVHVNMIIVGTHED
CDALSKVLSFKSPTNNVWPLSLYAGCVFIWDWERGQLLISQTAFINQLCE
RFDVCSSSPTPAATNAKFLRRQEDEGAGCGRFRELIGVLLWAVNMTRPDI
SNSVRSLAKYSQDPSEEHWKGAIQVLQYLHGSREQGIVHEQGRGLELV*
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mRNA from alignment at D-mesarthrocarpus_Contig1040:12424..14186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1040.7.1 ID=mRNA_D-mesarthrocarpus_Contig1040.7.1|Name=mRNA_D-mesarthrocarpus_Contig1040.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1763bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1040:12424..14186- (Discosporangium mesarthrocarpum MT17_79)
GGAGACTGGACCAGATCTCGACATCGGTGGGGGCGGTAGTACCAATGTTG GGGGGCGGGGAGGCGATGTGACCTGCCACTCTGTCGACGGGCCCAAAGAC CAAGGTGGTGATTTTTCTCCTACCTTTCATGACTCGCAGGGAGGGTCACG GGACCCCCCTGCATCAACTGCAGCCCACACGGCGCCCAGGCAGTTGGCAG GCTTCTTCTCTGCTCCATGTGGGGACACTGACTCCAGAGCAGGGAGGACT CGCTCTCAGACGCGAGCCCTACTAGAGGGGGTCATACTAGTAGCCCTCGT CGATCGAGCGGTAGATGCACTACGTATCTGAGTCACGAGACACCTATCTT GACTTTGTCTGATGTTCGTGCTGAGCCCTTGTTTTTCGAAGTGGCTGTCT CATCTCAGTACCGGGATTTCTGGGTGGACGCAATGAGGAAAGGGTTTAAG GGGCTTATGTGGGCAGGAGTGTTTACACCTAGTGAGCTACCAATTGGACG AAAGGCAACTGGGGGTAGGTGGGCGTGTAGATGGAAATCTAACGAGCTCG GCTTTGTTACTATAGCTAAGGCTAGATTAGTGGCGAAGGGGTACAGCCTA CAATACGTCTTCTGGCAGCATTTGCTAATGAGACTAACCGAGAGATGGTA CACCTAGATGCCGAACAGGCGTTCATCCAAGCCGACATCGATACAGAAGT ATATGTCAAGCTCCCACAAGGGTGTGAAGAACTGTCCAACACAGTGGACC GTCTCAATCGCGCTTTGTATAACCTGAAACAAGCAAGTAGGTGTTGGAAC GACAGCTTCATACAAGTTCTACTCTTCCTGGGTTTTGATCAGAGTAAGGC TGATCCATGTTTTTTCCGGGATGTCAGGAACTACGATGTAGACTTACTCG TTACCGTTCATGTCAATATGATTATCGTGGGTACGCACGAGGATTGTGAT GCGTTGAGTAAAGTTCTTAGTTTTAAGTCCCCAACCAACAACGTTTGGCC TTTGAGCTTGTATGCGGGATGTGTGTTTATTTGGGACTGGGAGAGAGGGC AATTGTTGATCTCACAGACTGCTTTCATCAACCAACTCTGTGAACGTTTT GATGTGTGTTCCTCCAGCCCCACCCCAGCAGCAACAAATGCAAAGTTCCT GCGTCGACAGGAAGATGAAGGTGCAGGGTGTGGGAGGTTCCGGGAATTAA TTGGTGTCCTTCTTTGGGCAGTCAATATGACCAGACCTGACATATCAAAC AGTGTGAGAAGCCTGGCCAAGTACTCGCAAGACCCTAGTGAGGAACATTG GAAGGGAGCCATTCAAGTCCTTCAATACCTCCATGGATCTCGGGAACAAG GAATTGTTCATGAGCAGGGGAGGGGGCTAGAGTTAGTTTAGCCGCCTTTG CAGGCTCTTCCTATGCAGGAGACTGAGCAGACAGACGTTCTGTTTCCGGT GGGGCTGTGATTTTTGGGATGGCTGCGGTAGCTTTGTTTCCAAGGACAGA GAAATGCAGCATTGTCTACATCTGAGTACATGGCCATGGGGGAGGTTTTC AGGGAGGCCCTTTTTGTGAGTAATGTCTTGGTTTTCATGCAACCACAGTA TGGGATACCCGTGGGCACTTGTGTGTACGAGGACAACAAGGGGGCAATTG ACCTAGCTAAGAACCCCTTCAGTACAGTAAGGACAAAACACAGTGATGTG CGACATCACTTCCTTAGAGACCTCGTGCAGAGTAAGGACATCAGTATATA TCATATATCCACA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1040:12424..14186-

>mRNA_D-mesarthrocarpus_Contig1040.7.1 ID=mRNA_D-mesarthrocarpus_Contig1040.7.1|Name=mRNA_D-mesarthrocarpus_Contig1040.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=747bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1040:12424..14186- (Discosporangium mesarthrocarpum MT17_79)
ATGGTACACCTAGATGCCGAACAGGCGTTCATCCAAGCCGACATCGATAC
AGAAGTATATGTCAAGCTCCCACAAGGGTGTGAAGAACTGTCCAACACAG
TGGACCGTCTCAATCGCGCTTTGTATAACCTGAAACAAGCAAGTAGGTGT
TGGAACGACAGCTTCATACAAGTTCTACTCTTCCTGGGTTTTGATCAGAG
TAAGGCTGATCCATGTTTTTTCCGGGATGTCAGGAACTACGATGTAGACT
TACTCGTTACCGTTCATGTCAATATGATTATCGTGGGTACGCACGAGGAT
TGTGATGCGTTGAGTAAAGTTCTTAGTTTTAAGTCCCCAACCAACAACGT
TTGGCCTTTGAGCTTGTATGCGGGATGTGTGTTTATTTGGGACTGGGAGA
GAGGGCAATTGTTGATCTCACAGACTGCTTTCATCAACCAACTCTGTGAA
CGTTTTGATGTGTGTTCCTCCAGCCCCACCCCAGCAGCAACAAATGCAAA
GTTCCTGCGTCGACAGGAAGATGAAGGTGCAGGGTGTGGGAGGTTCCGGG
AATTAATTGGTGTCCTTCTTTGGGCAGTCAATATGACCAGACCTGACATA
TCAAACAGTGTGAGAAGCCTGGCCAAGTACTCGCAAGACCCTAGTGAGGA
ACATTGGAAGGGAGCCATTCAAGTCCTTCAATACCTCCATGGATCTCGGG
AACAAGGAATTGTTCATGAGCAGGGGAGGGGGCTAGAGTTAGTTTAG
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