mRNA_D-mesarthrocarpus_Contig1040.10.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1040.10.1
Unique NamemRNA_D-mesarthrocarpus_Contig1040.10.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.10.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.640e-7
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 3 
Query:  195 RSAILFRRMFRVPYPLFVPLVEDVWNQGWLGS-------GGADAAGRPGIPLEEKVLSILHILGRGSVLDDM 389
            R A  FRR FRVPYP F+ LV++V    W G        GG     R  IP+E KVL++L ILGRG+  DD+
Sbjct:   82 REAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGT--RRCIPVETKVLAVLRILGRGNYFDDV 151
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.10.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.030e-7
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 3 
Query:  195 RSAILFRRMFRVPYPLFVPLVEDVWNQGWLGS-------GGADAAGRPGIPLEEKVLSILHILGRGSVLDDM 389
            R A  FRR FRVPYP F+ LV++V    W G        GG     R  IP+E KVL++L ILGRG+  DD+
Sbjct:   82 REAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGT--RRCIPVETKVLAVLRILGRGNYFDDV 151
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.10.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.220e-6
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 3 
Query:  195 RSAILFRRMFRVPYPLFVPLVEDVWNQGW---------LGSGGADAAGRPGIPLEEKVLSILHILGRGSVLDDM 389
            R A  FRR FRVPYP F+ LV++V    W         LG  G     R  IP+E KVL++L ILGRG+  DD+
Sbjct:   81 REAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGT----RRCIPVEIKVLAVLRILGRGNYFDDV 150
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BLAST of mRNA_D-mesarthrocarpus_Contig1040.10.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.540e-5
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 3 
Query:  195 RSAILFRRMFRVPYPLFVPLVEDVWNQGWLG--SGGADAAGR---PGIPLEEKVLSILHILGRGSVLDDM 389
            + A LFRR FR+PYP+F+ LV+++ + GW G  +   D  GR   P IP+E KVL      GRG+  DD+
Sbjct:   86 KDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKVL------GRGNFFDDI 149
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1040.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRQ7_9PHAE3.640e-747.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE8.030e-747.22Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE1.220e-645.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.540e-544.29DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1040contigD-mesarthrocarpus_Contig1040:17036..18709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size743
Hectar predicted targeting categoryother localisation
Exons3
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.8672872-UTR-D-mesarthrocarpus_Contig1040:17035..171791680789178.8672872-UTR-D-mesarthrocarpus_Contig1040:17035..17179Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1040 17036..17179 -
1680789178.9180875-UTR-D-mesarthrocarpus_Contig1040:18491..187091680789178.9180875-UTR-D-mesarthrocarpus_Contig1040:18491..18709Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1040 18492..18709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.8786194-CDS-D-mesarthrocarpus_Contig1040:17179..172491680789178.8786194-CDS-D-mesarthrocarpus_Contig1040:17179..17249Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1040 17180..17249 -
1680789178.8931699-CDS-D-mesarthrocarpus_Contig1040:17854..179401680789178.8931699-CDS-D-mesarthrocarpus_Contig1040:17854..17940Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1040 17855..17940 -
1680789178.906624-CDS-D-mesarthrocarpus_Contig1040:18266..184911680789178.906624-CDS-D-mesarthrocarpus_Contig1040:18266..18491Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1040 18267..18491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1040.10.1prot_D-mesarthrocarpus_Contig1040.10.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1040 17180..18491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1040.10.1

>prot_D-mesarthrocarpus_Contig1040.10.1 ID=prot_D-mesarthrocarpus_Contig1040.10.1|Name=mRNA_D-mesarthrocarpus_Contig1040.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=127bp
MFRVPYPLFVPLVEDVWNQGWLGSGGADAAGRPGIPLEEKVLSILHILGR
GSVLDDMFLWRGCVRVRRGKCCTSFGLRTWSTPCSMQTGTYTHRGANVGC
ATTRLGGVLREKGWHRLCPPQRGCKN*
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mRNA from alignment at D-mesarthrocarpus_Contig1040:17036..18709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1040.10.1 ID=mRNA_D-mesarthrocarpus_Contig1040.10.1|Name=mRNA_D-mesarthrocarpus_Contig1040.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1674bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1040:17036..18709- (Discosporangium mesarthrocarpum MT17_79)
ACTCAACACTGGGAGTGACAGGGAGGGGTTGTGCACTCATGGGCGGTGCT
GAAGAGCGAGGATGAAGAGGCGCAGTCCGTGAGGTAGAGGCGAAGGGAGA
GGCGGTTCCGTGACGTGTATGCACTTCCCAAATATAGGGAGTCGCCATGG
ATGAAGACGCTCCGAGATGAGAGCCTTGGCGACCCGGAGTCTATAGGAGT
GCGATATTGTTTCGTCGCATGTTCCGCGTCCCCTATCCCTTATTTGTACC
GCTTGTAGAAGATGTATGGAACCAGGGTTGGCTTGGAAGTGGCGGGGCTG
ATGCTGCTGGCCGCCCGGGCATCCCCCTGGAGGAGAAGGTGTTATCGATC
TTGCACATCCTTGGAAGAGGAAGTGTACTCGATGATATGTTTTTATGGCG
GGGATGTGTGAGAGTACGGCGTGGAAAGTGCTGCACAAGTTTTGTGAGTG
CTTCAGTGAACACATGTTAGAAACCCGAATTGGGTTGTCTAAGAGTGACG
AGTAATTGCAACCATGGAAGCGTACCACCGTTTGGGGTTCATGGGTGCAG
TGGGGTCAAACGATGTGACCCATTTGAGTTGGAATAAGTGTCCAGTGGTT
GATACTAGGTCGTATAAAGGCAAGCAAGGCTTCCCCACTCTCGCATACAA
GGTCACCGTCGGCCATTCCATGCATGTTCTAGGGGCAACATGTGGCTTTC
CGGGCGCACGCAATGATAAGACGATAGTTCGCTACAACGGCACCGTTGTC
CACGTCCGGATGAATAAAGGGTTTACGGACTTGGAGTACACCCTGTTCGA
TGCAGACGGGAACGTACACCCACAGAGGGGCGAACGTCGGCTGTGCTACC
ACCAGGTGCTTCCGCGGGGGTGTTAACCCCCGCTGCCTCTGCATTGTGTC
TGTATTGTGTCTGCATTGTGTCTGCATTGTTTCTGAGGGATGTTTTGGAG
TTTATTCAGCCTAAATTTCCCAGGTGCTGTGGGGAGATTTATGAGGAATA
TTGTGTGACCAACAAAGTTGGTGCTTTGTTTTGTAGCACAAAGCACATAC
GTAATAGATCATAGACGCCACTCTTTTTCTGGACTGTTCTGTTCGTACAT
TGTGATATATATATATCAGTAGAATGTATAAGGTGCTGCAGAACGATTCG
CATCAGCGGTCGTTCCGACTTATTCTAGATAGGATGTGTTACGTTGTGAA
TTCAGGTATCTTACTCTGTTATTGGTGATTTATTCTAATTTTTTTGTGGG
TTGTTTGCTGTTGTCAAAGCAAGCCCCCGACTTGGTGTTTTCTCCCACTC
AACTTTACATATTTTCAAATCCTCCAACATCCTTCTTCTGAATTGAGCCT
CTCTGAGACCCCACAGCTATGATCTTATGAACATGCTATAGCGTAAAGAT
CTTCGATCGGTCTAGCTGACAATGGCATCTGAGGTAGACGCTGGCTCGGC
CCTAACCCAGGTTGGGGGGGGTCTTGAGAGAGAAGGGGTGGCACCGGCTG
TGCCCCCCGCAGCGGGGATGCAAAAATTGATGGATTTGATTGATGACCTG
GGACTCATGATCACCTAAAAGCGCTAAGGAAATCGCGTCACAGGAACAGG
ATCAAGTACTGCATGGCGAGGACGACCTCAACTGGCCTCTGAGGACCCAT
GGCGCCCCGACAGCATCGCGCGAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1040:17036..18709-

>mRNA_D-mesarthrocarpus_Contig1040.10.1 ID=mRNA_D-mesarthrocarpus_Contig1040.10.1|Name=mRNA_D-mesarthrocarpus_Contig1040.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=381bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1040:17036..18709- (Discosporangium mesarthrocarpum MT17_79)
ATGTTCCGCGTCCCCTATCCCTTATTTGTACCGCTTGTAGAAGATGTATG
GAACCAGGGTTGGCTTGGAAGTGGCGGGGCTGATGCTGCTGGCCGCCCGG
GCATCCCCCTGGAGGAGAAGGTGTTATCGATCTTGCACATCCTTGGAAGA
GGAAGTGTACTCGATGATATGTTTTTATGGCGGGGATGTGTGAGAGTACG
GCGTGGAAAGTGCTGCACAAGTTTTGGTTTACGGACTTGGAGTACACCCT
GTTCGATGCAGACGGGAACGTACACCCACAGAGGGGCGAACGTCGGCTGT
GCTACCACCAGGTTGGGGGGGGTCTTGAGAGAGAAGGGGTGGCACCGGCT
GTGCCCCCCGCAGCGGGGATGCAAAAATTGA
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