mRNA_D-mesarthrocarpus_Contig10399.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10399.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10399.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: A0A6H5L6F7_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6F7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.860e-21
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            +IAL SMQQIQM QI+ A+P QE AM EQALSLCTRCLSYDFIGTN DESSEDVGTIQV
Sbjct:  186 QIALKSMQQIQMRQIVNASPAQEAAMLEQALSLCTRCLSYDFIGTNPDESSEDVGTIQV 244
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: A0A7S2V5L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5L2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.060e-17
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            +IALT+++Q+QM  ++ ATP+QE  MA Q+L+L T CL YDFIGTN DES+EDVGTIQ+
Sbjct:   15 QIALTTLKQLQMRSVVGATPEQEDKMATQSLTLSTNCLGYDFIGTNPDESAEDVGTIQI 73
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: D0P208_PHYIT (Exportin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P208_PHYIT)

HSP 1 Score: 77.4 bits (189), Expect = 3.470e-15
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            ++ALTS++Q+QMH I  ATP QE  M +QALSL  +CLS+DFIGTN DESSE+ G++QV
Sbjct:  186 QVALTSIKQLQMHNIRGATPQQEARMGDQALSLLIKCLSFDFIGTNPDESSEETGSLQV 244
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: A0A662YJ06_9STRA (Importin N-terminal domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ06_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            ++ALT+++Q+QMH I  ATP QE  M +QAL+L  +CLS+DFIGTN DESSE+ G++QV
Sbjct:  190 QVALTTLKQLQMHNIRGATPQQETRMGDQALALLIKCLSFDFIGTNPDESSEETGSLQV 248
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: H3GGA7_PHYRM (Importin N-terminal domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GGA7_PHYRM)

HSP 1 Score: 74.7 bits (182), Expect = 3.100e-14
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            ++ALTS++Q+QMH I  A+P QE  M +QAL+L  +CLS+DFIGTN DESSE+ G++QV
Sbjct:  186 QVALTSIKQLQMHNIRGASPQQESRMGDQALALLIKCLSFDFIGTNPDESSEETGSLQV 244
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: K3WZX1_GLOUD (Importin N-terminal domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZX1_GLOUD)

HSP 1 Score: 73.2 bits (178), Expect = 1.080e-13
Identity = 34/59 (57.63%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            +++LT+++Q+ MH I+ ATP QE  M +QALSL  +CLS+DFIGTN DESSE+ G++QV
Sbjct:  186 QLSLTTLKQLHMHNIIGATPTQEDRMGDQALSLVIKCLSFDFIGTNPDESSEETGSLQV 244
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: A0A5D6XJM5_9STRA (Importin N-terminal domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJM5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-13
Identity = 33/59 (55.93%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            ++ALT+++Q+Q+H I  ATP QE+ M +QALSL  +CLS+DFIGTN DES+++ G++QV
Sbjct:  186 QVALTTLKQLQVHNIRGATPAQEQRMGDQALSLVIKCLSFDFIGTNPDESADETGSLQV 244
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: A0A484EDS8_BRELC (Importin N-terminal domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDS8_BRELC)

HSP 1 Score: 72.0 bits (175), Expect = 2.750e-13
Identity = 32/59 (54.24%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            ++ALTS++Q+Q+H +  ATP QE  M EQAL++  +CLS+DFIGTN DES+++ G++QV
Sbjct:  186 QVALTSIKQLQLHNLRGATPQQEARMGEQALAVLLKCLSFDFIGTNPDESTDETGSLQV 244
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: A0A4D9CV70_9STRA (Importin N-terminal domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV70_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.760e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            +I L+++QQ+Q  Q   A+P QE  +AEQAL+L  R LS+DFIGTN DES+EDVGTIQV
Sbjct:  186 QICLSTLQQVQRRQFANASPQQEVKIAEQALALSVRALSFDFIGTNPDESAEDVGTIQV 244
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Match: A0A024TFT7_9STRA (Importin N-terminal domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TFT7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.600e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 KIALTSMQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGTIQV 177
            ++ALT+++ +QM  I  A+PDQE  MA+ AL+L  +CLS+DFIGTN DESSED G +QV
Sbjct:  186 QVALTTVKTLQMKNIPGASPDQENRMADLALNLAIKCLSFDFIGTNPDESSEDAGALQV 244
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10399.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F7_9PHAE3.860e-2183.05Importin N-terminal domain-containing protein n=2 ... [more]
A0A7S2V5L2_9STRA8.060e-1762.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D0P208_PHYIT3.470e-1562.71Exportin-like protein n=1 Tax=Phytophthora infesta... [more]
A0A662YJ06_9STRA1.660e-1459.32Importin N-terminal domain-containing protein n=2 ... [more]
H3GGA7_PHYRM3.100e-1459.32Importin N-terminal domain-containing protein n=22... [more]
K3WZX1_GLOUD1.080e-1357.63Importin N-terminal domain-containing protein n=1 ... [more]
A0A5D6XJM5_9STRA1.470e-1355.93Importin N-terminal domain-containing protein (Fra... [more]
A0A484EDS8_BRELC2.750e-1354.24Importin N-terminal domain-containing protein n=1 ... [more]
A0A4D9CV70_9STRA3.760e-1361.02Importin N-terminal domain-containing protein n=3 ... [more]
A0A024TFT7_9STRA9.600e-1357.63Importin N-terminal domain-containing protein n=5 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10399contigD-mesarthrocarpus_Contig10399:4039..4215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3N6
Preferred nameXPO7
PFAMsIBN_N
Model size177
Max annot lvl2759|Eukaryota
KEGG koko:K18460
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0031267,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051020,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons1
Evalue7.1e-20
EggNOG OGsKOG1410@1|root,KOG1410@2759|Eukaryota
Descriptionnuclear export signal receptor activity
Cds size159
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.430396-CDS-D-mesarthrocarpus_Contig10399:4038..41971680789178.430396-CDS-D-mesarthrocarpus_Contig10399:4038..4197Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10399 4039..4197 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.443247-UTR-D-mesarthrocarpus_Contig10399:4197..42151680789178.443247-UTR-D-mesarthrocarpus_Contig10399:4197..4215Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10399 4198..4215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10399.3.1prot_D-mesarthrocarpus_Contig10399.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10399 4039..4197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10399.3.1

>prot_D-mesarthrocarpus_Contig10399.3.1 ID=prot_D-mesarthrocarpus_Contig10399.3.1|Name=mRNA_D-mesarthrocarpus_Contig10399.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=53bp
MQQIQMHQIMKATPDQERAMAEQALSLCTRCLSYDFIGTNSDESSEDVGT
IQV
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10399:4039..4215-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10399.3.1 ID=mRNA_D-mesarthrocarpus_Contig10399.3.1|Name=mRNA_D-mesarthrocarpus_Contig10399.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=177bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10399:4039..4215- (Discosporangium mesarthrocarpum MT17_79)
AAGATTGCGCTGACAAGCATGCAGCAGATCCAGATGCACCAGATCATGAA
GGCCACCCCCGACCAGGAGAGGGCCATGGCAGAGCAGGCCCTCTCCCTGT
GCACGCGCTGCCTCTCCTACGACTTCATCGGCACCAACTCTGACGAGAGC
TCAGAGGACGTGGGGACCATCCAGGTG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10399:4039..4215-

>mRNA_D-mesarthrocarpus_Contig10399.3.1 ID=mRNA_D-mesarthrocarpus_Contig10399.3.1|Name=mRNA_D-mesarthrocarpus_Contig10399.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=159bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10399:4039..4215- (Discosporangium mesarthrocarpum MT17_79)
ATGCAGCAGATCCAGATGCACCAGATCATGAAGGCCACCCCCGACCAGGA
GAGGGCCATGGCAGAGCAGGCCCTCTCCCTGTGCACGCGCTGCCTCTCCT
ACGACTTCATCGGCACCAACTCTGACGAGAGCTCAGAGGACGTGGGGACC
ATCCAGGTG
back to top