mRNA_D-mesarthrocarpus_Contig10383.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10383.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10383.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: D7FKZ0_ECTSI (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ0_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.390e-29
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   97 YPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            +P  AA+ + K ++EGVAT++ELDEIK  V+ SYEKDFE SK+WE AGD+WLSSKWSGFKSPRQLSRVR TGVD+ VLRS+G
Sbjct:  491 HPDTAAIFESKLLREGVATQDELDEIKNSVVESYEKDFEESKSWEPAGDEWLSSKWSGFKSPRQLSRVRSTGVDMNVLRSVG 572          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A835Z9M1_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.390e-28
Identity = 55/83 (66.27%), Postives = 70/83 (84.34%), Query Frame = 1
Query:   94 DYPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            ++P   ++ + + + EGVA+KEELD IK FV  SYE+DF+ASKTWE++ DDWLSSKWSGFKSPRQLSR+RQTGVD+KVLR +G
Sbjct:  506 NHPDTVSIFEARLLSEGVASKEELDGIKAFVQESYERDFDASKTWETSKDDWLSSKWSGFKSPRQLSRIRQTGVDLKVLRVVG 588          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A7R9WL04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WL04_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.720e-23
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   97 YPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            +P    + +K+ + EGV +KEE DEI+ FVL SYEKDFEASKT E    DWL++KW GFK P Q SR+R TGV++ VLR IG
Sbjct:   18 HPTTLELFEKRLIDEGVFSKEEADEIRQFVLDSYEKDFEASKTLEPNDTDWLATKWKGFKGPTQHSRIRPTGVEIDVLRDIG 99          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A7S0GI93_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GI93_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.480e-23
Identity = 46/83 (55.42%), Postives = 65/83 (78.31%), Query Frame = 1
Query:   94 DYPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            D+P    + +K+ +++G  TKEE +EI+ F L SYE D EASK++ES  +DWLSSKWSGFKSP+QLSRVR+TGV+++ L+ +G
Sbjct:  176 DHPTTLEVYEKRLIEDGTLTKEECEEIRSFTLKSYEADLEASKSYESTAEDWLSSKWSGFKSPKQLSRVRKTGVELETLKRVG 258          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A448ZD84_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD84_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.840e-22
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   97 YPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            +P    + +K+ + EG  T EE++EIK FV+ SYE D EASKT++ + DDWLSSKW+GFKSP Q+SR+R TGVD+++LR IG
Sbjct:  551 HPTALQLFEKRLVNEGTMTPEEIEEIKTFVMDSYENDLEASKTYQKSEDDWLSSKWAGFKSPTQMSRIRPTGVDIEMLRKIG 632          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A7S3LCB0_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCB0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.510e-22
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   97 YPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            +P    + +K+ + EG  TKEE +EIK F L SYEKD EASKT+E    DWLSS+W+GFK P QLSR+R TGVDV++LR IG
Sbjct:  556 HPTTLQIFEKRLVDEGTLTKEECEEIKAFTLDSYEKDLEASKTYEKKETDWLSSRWTGFKGPSQLSRIRDTGVDVEILRKIG 637          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A1E7FW89_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW89_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.420e-22
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   97 YPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            +P    + +K+ +KEG  TKEE+DEIK  V+ SYEKD EASKT   + DDWL+SKW+GFK P QLSR+R TGVD+ +LR IG
Sbjct:  545 HPTTLQIFEKRLIKEGTMTKEEIDEIKNNVMESYEKDLEASKTHVQSKDDWLASKWAGFKGPTQLSRIRSTGVDIDMLRKIG 626          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A7S2R3E7_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3E7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.670e-22
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   94 DYPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            ++P    + +K+ ++ G  TKEE+DEIK F L SYEKD E SK++    DDWLSSKW+GFKSP+QLSR+R TGVD+ VLR +G
Sbjct:  555 NHPATIEIFEKELLESGDVTKEEIDEIKKFTLDSYEKDLETSKSYVPKKDDWLSSKWTGFKSPKQLSRIRPTGVDIDVLRQVG 637          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: A0A1Z5KEQ8_FISSO (Oxoglutarate dehydrogenase (succinyl-transferring) n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEQ8_FISSO)

HSP 1 Score: 99.0 bits (245), Expect = 8.680e-22
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   97 YPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            +P    + +KK + EG  T+EE DEIK +V  +YEKDFEASKT+  +  DWLSS+WSGFK P QLSR+RQTGV+++ LR IG
Sbjct:  549 HPSTLKIFEKKLLDEGTLTQEECDEIKKYVQDNYEKDFEASKTYRKSETDWLSSRWSGFKGPSQLSRIRQTGVEIETLRKIG 630          
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Match: B8CBX3_THAPS (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBX3_THAPS)

HSP 1 Score: 98.2 bits (243), Expect = 1.610e-21
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   97 YPIVAAMKKKKKMKEGVATKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRVRQTGVDVKVLRSIG 342
            +P    + +KK ++EG  +KEE++EI+ F L SYE D+EASKT++   +DWLSSKWSGFKSPRQ SR+R TGVD+  LR IG
Sbjct:  517 HPSTLEIFEKKLIEEGTMSKEEVEEIRAFTLQSYETDYEASKTYKPKPEDWLSSKWSGFKSPRQHSRIRPTGVDIDTLRYIG 598          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10383.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKZ0_ECTSI2.390e-2970.73Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A835Z9M1_9STRA5.390e-2866.27Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7R9WL04_9STRA4.720e-2357.32Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7S0GI93_9STRA9.480e-2355.42Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448ZD84_9STRA1.840e-2256.10Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S3LCB0_9STRA2.510e-2258.54Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A1E7FW89_9STRA3.420e-2258.54Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S2R3E7_9STRA4.670e-2256.63Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A1Z5KEQ8_FISSO8.680e-2257.32Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
B8CBX3_THAPS1.610e-2157.32Oxoglutarate dehydrogenase (succinyl-transferring)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10383contigD-mesarthrocarpus_Contig10383:3159..3972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKZ0
PFAMs2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
Model size342
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.92e-30
EggNOG OGsCOG0567@1|root,KOG0450@2759|Eukaryota
EC1.2.4.2
Descriptionoxoglutarate dehydrogenase (succinyl-transferring) activity
Cds size342
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789177.4578495-CDS-D-mesarthrocarpus_Contig10383:3158..32871680789177.4578495-CDS-D-mesarthrocarpus_Contig10383:3158..3287Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10383 3159..3287 -
1680789177.477158-CDS-D-mesarthrocarpus_Contig10383:3759..39721680789177.477158-CDS-D-mesarthrocarpus_Contig10383:3759..3972Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10383 3760..3972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10383.2.1prot_D-mesarthrocarpus_Contig10383.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10383 3159..3972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10383.2.1

>prot_D-mesarthrocarpus_Contig10383.2.1 ID=prot_D-mesarthrocarpus_Contig10383.2.1|Name=mRNA_D-mesarthrocarpus_Contig10383.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=114bp
MILCVCVCVCYVRRITKKKKCELNPKPLGFYDYPIVAAMKKKKKMKEGVA
TKEELDEIKGFVLSSYEKDFEASKTWESAGDDWLSSKWSGFKSPRQLSRV
RQTGVDVKVLRSIG
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mRNA from alignment at D-mesarthrocarpus_Contig10383:3159..3972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10383.2.1 ID=mRNA_D-mesarthrocarpus_Contig10383.2.1|Name=mRNA_D-mesarthrocarpus_Contig10383.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=814bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10383:3159..3972- (Discosporangium mesarthrocarpum MT17_79)
ATGATTTTGTGTGTGTGTGTGTGTGTGTGTTATGTGCGTCGCATAACAAA AAAAAAAAAATGTGAGCTAAACCCAAAACCTCTGGGCTTTTACGACTACC CAATTGTTGCGGCCATGAAAAAAAAAAAAAAGATGAAGGAGGGCGTAGCC ACCAAGGAGGAGCTCGATGAGATCAAGGGCTTCGTGCTCTCTTCCTACGA GAAAGACTTTGAGGTGAGCCGGCGCGTCTTGCATCTTGCGTCGGCGATGC GTACGCCGGCCAGGGTACAGCAGGGGTGCCGCCCGCCACTCTTTTTTTGC CTGTTCCGTTCACTCATCGACTTGAGGCACGGAACGCTTTTTTTTTTTAA TGTGAGGTACAGGTGCGATCAATGCTCGGGGGTTAGGGTTAGGGTTAGTA CGCTGAAGTTCTCGGAACCCCGGGGCTTCCGTGCTCTGTGGGTACTGTCC CTGCCTGCCTGCCTTGCGCTTTTGCTCTGGGCCCATGGATTGAGCAACCA AACCAAGAACCTCAGGGCGAACAGATTCCTAACCCTTTGGAGAACATTTA CACAAGAAGAGACCCTTACGCCGATTTTATTCTTCAGACAGAAGGCAAAT AACCTTGCGCTCGTCGCTCTCCCGCCTCAGCCCCCTCTCTTGCCCGCTGA CCGCACGGTTGGACAACCTTTCCCCCCCCCTCCAGGCATCGAAGACTTGG GAGTCTGCTGGGGATGACTGGCTCTCCTCCAAGTGGAGCGGGTTCAAGTC GCCCAGGCAGCTGTCAAGGGTTCGGCAGACAGGGGTTGATGTGAAGGTGC TCAGGTCCATCGGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10383:3159..3972-

>mRNA_D-mesarthrocarpus_Contig10383.2.1 ID=mRNA_D-mesarthrocarpus_Contig10383.2.1|Name=mRNA_D-mesarthrocarpus_Contig10383.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=342bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10383:3159..3972- (Discosporangium mesarthrocarpum MT17_79)
ATGATTTTGTGTGTGTGTGTGTGTGTGTGTTATGTGCGTCGCATAACAAA
AAAAAAAAAATGTGAGCTAAACCCAAAACCTCTGGGCTTTTACGACTACC
CAATTGTTGCGGCCATGAAAAAAAAAAAAAAGATGAAGGAGGGCGTAGCC
ACCAAGGAGGAGCTCGATGAGATCAAGGGCTTCGTGCTCTCTTCCTACGA
GAAAGACTTTGAGGCATCGAAGACTTGGGAGTCTGCTGGGGATGACTGGC
TCTCCTCCAAGTGGAGCGGGTTCAAGTCGCCCAGGCAGCTGTCAAGGGTT
CGGCAGACAGGGGTTGATGTGAAGGTGCTCAGGTCCATCGGT
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