mRNA_D-mesarthrocarpus_Contig10382.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10382.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig10382.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10382.4.1 vs. uniprot
Match: A0A1Q8FWD6_9PROT (Uncharacterized protein n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FWD6_9PROT)

HSP 1 Score: 301 bits (772), Expect = 8.300e-103
Identity = 146/177 (82.49%), Postives = 159/177 (89.83%), Query Frame = 1 
Query:    1 MLNLKQIATLTAIGLAACAAPAASAQSSWSFGYSQGQSTGHEYHRSYYEHGYDRHEFRYRRDACQPRRRGGLGLGVGLGGAPVLTAQVGGHWTECDRGQFTHAQYEAFDHDRTAYWHNPDSGRRGVVRPERHYRRNGQACASGHAEVYDRDGDYQRFEFESCRDGSGRWQFEGRSGR 531
            MLNLKQIA LTA+G AA +APAA AQSSWSFGYSQGQS   +YH SYYEHGYDRHEFRY R+ACQP+RRGGLGLG+ LGGAPVL+A VG  WTECDRGQF++AQYEAFD  R AYWHNPDSGRRGVVRPERHYRR+GQ CASGHAEVY+RDGDYQRF+FESCRDGSG W+FEGRSGR
Sbjct:    1 MLNLKQIAVLTALGTAAASAPAALAQSSWSFGYSQGQSASRDYHASYYEHGYDRHEFRYYREACQPQRRGGLGLGLSLGGAPVLSASVGSRWTECDRGQFSYAQYEAFDQRRAAYWHNPDSGRRGVVRPERHYRRHGQECASGHAEVYERDGDYQRFDFESCRDGSGHWRFEGRSGR 177
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BLAST of mRNA_D-mesarthrocarpus_Contig10382.4.1 vs. uniprot
Match: UPI000D65E1DB (hypothetical protein n=1 Tax=Hyphobacterium indicum TaxID=2162714 RepID=UPI000D65E1DB)

HSP 1 Score: 116 bits (291), Expect = 7.650e-30
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:  106 GQSTGHEYHRSYYEHGYDRHEFRYRRDACQPRRRGGLGLGVGLGGAPVL--TAQVGGHWTECDRGQFTHAQYEAFDHDRTAYWHNPDSGRRGVVRPERHYRRNGQACASGHAEVYDRDGDYQRFEFESCRDGSGRWQFEG 519
            G S+   YH   ++ GYD   FRY R AC+ R  GGLGLG  L   P+L    Q+GG + +CD  Q++ A   + +   T YW NP+SG RGVVRP  +Y R  + CAS  +E +   GDY R +FE CR+  G W+F G
Sbjct:   27 GHSSHFSYHHXXHDRGYDHRSFRYNRQACETRTSGGLGLGAVLDAGPLLGVDVQLGGRFNDCDHRQYSWASGWSAESRSTTYWENPNSGARGVVRPRDYYDRGSRTCASFESESWSGYGDYDRGQFEMCRNHRGDWEFSG 166
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BLAST of mRNA_D-mesarthrocarpus_Contig10382.4.1 vs. uniprot
Match: A0A2D8BU66_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8BU66_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 1.000e-16
Identity = 53/145 (36.55%), Postives = 70/145 (48.28%), Query Frame = 1 
Query:  127 YHRSYYEHGYDRHEFRYRRDACQPRRR--------GGL---------GLGVGLGGAPVLTAQVGGHWTECDRGQFTHAQYEAFDHDRTAYWHNPDSGRRGVVRPERHYRRNGQACASGHAEVYDRDGDYQRFEFESCRDGSGRWQ 510
            YH +YY  GYDRH +RY    C             G L         G G   GG  ++ A +      CDRGQ+ +A   +FDH++  YWHNP SG RGVV    +Y   G+ C  G AE++  +GDY       C+D  GRW+
Sbjct:  219 YHTTYYNRGYDRHNYRYYDAGCGASGGDVFAGAILGALFGVAVADDDGAGALFGG--LVGAGLSASLNSCDRGQYYYAASYSFDHNQPYYWHNPHSGVRGVVHARDYYNYGGRRCRWGDAEIFMPNGDYTTDRILMCQDRYGRWE 361
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10382.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1Q8FWD6_9PROT8.300e-10382.49Uncharacterized protein n=2 Tax=Maricaulis TaxID=7... [more]
UPI000D65E1DB7.650e-3043.57hypothetical protein n=1 Tax=Hyphobacterium indicu... [more]
A0A2D8BU66_9PROT1.000e-1636.55Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10382contigD-mesarthrocarpus_Contig10382:3696..4229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size534
Hectar predicted targeting categorysignal peptide
Exons1
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789177.37095-CDS-D-mesarthrocarpus_Contig10382:3695..42291680789177.37095-CDS-D-mesarthrocarpus_Contig10382:3695..4229Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10382 3696..4229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10382.4.1prot_D-mesarthrocarpus_Contig10382.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10382 3696..4229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10382.4.1

>prot_D-mesarthrocarpus_Contig10382.4.1 ID=prot_D-mesarthrocarpus_Contig10382.4.1|Name=mRNA_D-mesarthrocarpus_Contig10382.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=178bp
MLNLKQIATLTAIGLAACAAPAASAQSSWSFGYSQGQSTGHEYHRSYYEH
GYDRHEFRYRRDACQPRRRGGLGLGVGLGGAPVLTAQVGGHWTECDRGQF
THAQYEAFDHDRTAYWHNPDSGRRGVVRPERHYRRNGQACASGHAEVYDR
DGDYQRFEFESCRDGSGRWQFEGRSGR*
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mRNA from alignment at D-mesarthrocarpus_Contig10382:3696..4229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10382.4.1 ID=mRNA_D-mesarthrocarpus_Contig10382.4.1|Name=mRNA_D-mesarthrocarpus_Contig10382.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=534bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10382:3696..4229+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTGAACCTGAAACAGATTGCCACCCTGACCGCCATCGGTCTCGCCGC
CTGTGCGGCACCAGCCGCCTCGGCCCAGTCGAGCTGGAGCTTTGGCTACA
GCCAGGGCCAGAGCACCGGCCATGAGTATCACCGCAGCTATTACGAGCAC
GGTTATGACCGGCACGAGTTCCGCTATCGCCGTGATGCCTGTCAGCCGCG
CCGTCGTGGCGGTCTGGGCCTTGGTGTCGGCCTCGGCGGAGCGCCGGTCC
TGACGGCGCAGGTCGGTGGTCACTGGACCGAATGCGACCGGGGCCAGTTC
ACCCACGCCCAGTACGAAGCCTTTGACCATGACCGCACCGCCTACTGGCA
CAATCCCGACAGCGGACGCCGCGGTGTGGTGCGCCCGGAGCGGCATTATC
GCCGCAATGGCCAGGCCTGTGCATCGGGCCATGCCGAGGTCTATGACCGC
GATGGTGACTATCAACGCTTCGAATTCGAAAGCTGCCGCGACGGCTCAGG
CCGCTGGCAGTTCGAGGGACGCAGCGGCCGCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10382:3696..4229+

>mRNA_D-mesarthrocarpus_Contig10382.4.1 ID=mRNA_D-mesarthrocarpus_Contig10382.4.1|Name=mRNA_D-mesarthrocarpus_Contig10382.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=534bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10382:3696..4229+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTGAACCTGAAACAGATTGCCACCCTGACCGCCATCGGTCTCGCCGC
CTGTGCGGCACCAGCCGCCTCGGCCCAGTCGAGCTGGAGCTTTGGCTACA
GCCAGGGCCAGAGCACCGGCCATGAGTATCACCGCAGCTATTACGAGCAC
GGTTATGACCGGCACGAGTTCCGCTATCGCCGTGATGCCTGTCAGCCGCG
CCGTCGTGGCGGTCTGGGCCTTGGTGTCGGCCTCGGCGGAGCGCCGGTCC
TGACGGCGCAGGTCGGTGGTCACTGGACCGAATGCGACCGGGGCCAGTTC
ACCCACGCCCAGTACGAAGCCTTTGACCATGACCGCACCGCCTACTGGCA
CAATCCCGACAGCGGACGCCGCGGTGTGGTGCGCCCGGAGCGGCATTATC
GCCGCAATGGCCAGGCCTGTGCATCGGGCCATGCCGAGGTCTATGACCGC
GATGGTGACTATCAACGCTTCGAATTCGAAAGCTGCCGCGACGGCTCAGG
CCGCTGGCAGTTCGAGGGACGCAGCGGCCGCTAG
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