mRNA_D-mesarthrocarpus_Contig10382.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: A0A1Q8FWJ9_9PROT (RNA polymerase subunit sigma-70 n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FWJ9_9PROT) HSP 1 Score: 278 bits (712), Expect = 5.710e-90 Identity = 141/173 (81.50%), Postives = 155/173 (89.60%), Query Frame = 1
Query: 1 MGTRTTRVENEIIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVGADDPDFEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQLNPSAMEGQSDD 519
MG R+ R+ENE+IEYLPRMRRFARSLSRD ADADDLVQLTVERALTRLDQWQ G YRIMKNAWIDETRRRQRQGRH APPEAGE+VGA+DPDF+KR+RAM+VERAM TLPDDQR+AV LVLVEGLSYKEAS+V+DVPMGTLTSRLARGRKA+EAQLNP ++E DD
Sbjct: 1 MGKRSARLENEMIEYLPRMRRFARSLSRDAADADDLVQLTVERALTRLDQWQDGTRLDSWMYRIMKNAWIDETRRRQRQGRHLAPPEAGESVGAEDPDFDKRIRAMSVERAMATLPDDQRIAVGLVLVEGLSYKEASNVLDVPMGTLTSRLARGRKALEAQLNPDSVEAGHDD 173
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: A0A1Q8FWI2_9PROT (Uncharacterized protein n=3 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FWI2_9PROT) HSP 1 Score: 259 bits (663), Expect = 1.650e-81 Identity = 142/244 (58.20%), Postives = 178/244 (72.95%), Query Frame = 2
Query: 515 MIDDETLIAFMDGELNDAGMDRVAAAIDADPALAERLDALQTTDTAIRETYQPVAEEAVPDHLLDLVRSSE--ASDDEPTVLPFRRPAPKAATPQRPAWTNYAAIAASLVLGVLIGGRLGGGEEGLMIFEGDRPIAGGVLAAALEHQASGETGPDGTAIQLSFRATDGTACRSFLHGETTGLACRENGQWVVQMTAPAETANGSVMRTASSAMPTSILDAIDARISGDALGADDEAQLIADGWS 1240
MIDDETLIAF+DGEL++A M+R+A AIDADPAL +RL+ LQ +D A+RETYQP+AEEAVPDHL+ VR ++ + D TVLPF+RP P RPAW Y AIAASLV+GVLIG R G E + FEGDR +AGGVLA AL+ QASG G T +QLSF G CR+F G T GLACRE+G+WVV++TAP + +RTAS+A+PT +L+A+DARI+G+ L A+ EA I +GWS
Sbjct: 1 MIDDETLIAFLDGELDEAEMERIAVAIDADPALTDRLERLQLSDQAVRETYQPIAEEAVPDHLIAAVRQADRDTAPDSETVLPFQRPTGD--RPSRPAWQAYGAIAASLVIGVLIGSRFGLTEPAPLHFEGDRLMAGGVLATALDRQASGAVGEGDTHVQLSFATDAGGYCRAFQQGGTAGLACREDGRWVVELTAPVPAGSNGPIRTASTALPTILLEAVDARIAGETLDAEAEAAAIENGWS 242
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: UPI001F2A3995 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Hyphobacterium indicum TaxID=2162714 RepID=UPI001F2A3995) HSP 1 Score: 194 bits (492), Expect = 6.080e-57 Identity = 101/158 (63.92%), Postives = 126/158 (79.75%), Query Frame = 1
Query: 31 EIIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVGADDPDFEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQLNPSAME 504
E++ LPR+RRF+RSL+R +ADADDL+Q +ERAL R DQ+QAG YR++KN WIDE R R R+ + AP EAG VGA+DP F++++RAM+VERAMETL DDQR+AVSLVLVEGLSYKEA+SV+D+PMGTLTSRLARGR+A+ QL A E
Sbjct: 11 ELMAILPRLRRFSRSLARHEADADDLLQTALERALKRSDQFQAGTRLDSWMYRMIKNIWIDEIRARNRRAQTFAPEEAGLGVGAEDPAFDRQVRAMSVERAMETLSDDQRIAVSLVLVEGLSYKEAASVLDLPMGTLTSRLARGRQALADQLAGKAGE 168
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: UPI001B8441D2 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Phenylobacterium sp. 20VBR1 TaxID=2803784 RepID=UPI001B8441D2) HSP 1 Score: 180 bits (456), Expect = 1.120e-51 Identity = 97/159 (61.01%), Postives = 114/159 (71.70%), Query Frame = 1
Query: 25 ENEIIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVGADDPD-FEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQLNPSA 498
+ EI+E LPR+RR AR+++RD ADADDL QLTVERAL R DQW G YRIMKNAWIDE R R RQGR AP E G NVG D E + A +VE+AM LPDDQRLAV+LVLVEGLSY+EA++V++VP GTLT RL RGR A+ L +A
Sbjct: 5 QREIVELLPRLRRLARAITRDVADADDLTQLTVERALVRADQWTPGTRLDSWMYRIMKNAWIDEARARTRQGRVFAPEEQGLNVGTDGAAAMEAHLEAASVEQAMGRLPDDQRLAVALVLVEGLSYREAAAVLEVPEGTLTRRLVRGRNALLVDLRGAA 163
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: A0A6B3URG0_9CAUL (Sigma-70 family RNA polymerase sigma factor n=4 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A6B3URG0_9CAUL) HSP 1 Score: 175 bits (443), Expect = 7.940e-50 Identity = 94/156 (60.26%), Postives = 115/156 (73.72%), Query Frame = 1
Query: 34 IIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVG-ADDPDFEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQLNPSA 498
++E LPR+RRFAR L+RD ADADDLVQ+ VERAL + W+ G YRIMKNAWIDETR R R+GR APPEAGENV A E R++A +VE A+ LP+DQRLAV+LVL+EGLSY+EA+ ++VP GTLTSRL RGR A+ A + SA
Sbjct: 1 MVELLPRLRRFARVLARDSADADDLVQVCVERALEKRALWRPGTRLDSWMYRIMKNAWIDETRSRARRGRVLAPPEAGENVADASVASLETRLQAASVEEAIARLPEDQRLAVALVLIEGLSYREAAEALEVPEGTLTSRLVRGRAAVMAHMKGSA 156
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: A0A494WA44_9SPHN (RNA polymerase sigma factor n=1 Tax=Sphingobium amiense TaxID=135719 RepID=A0A494WA44_9SPHN) HSP 1 Score: 174 bits (441), Expect = 1.840e-49 Identity = 94/159 (59.12%), Postives = 114/159 (71.70%), Query Frame = 1
Query: 25 ENEIIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVGADDPD-FEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQLNPSA 498
E +++ LPR+RRFA SLSRD+AD DDL Q TVE+AL DQWQ G YRIM+N WIDE R RQR GR AP EAGE+VG D E + V+RAM+ LPD+QR AV+LVLVEGLSYKEA++V+D+PMGTLTSRL RGR A+ A + +A
Sbjct: 4 ERDMLAILPRLRRFALSLSRDRADGDDLCQATVEKALRARDQWQPGTRLDSWMYRIMRNLWIDEARARQRAGRTFAPEEAGEHVGDAGHDRIEALVTLSDVDRAMQALPDEQREAVALVLVEGLSYKEAAAVLDIPMGTLTSRLVRGRGALIAMMGEAA 162
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: UPI001FE99BFE (RNA polymerase sigma factor n=1 Tax=Pseudorivibacter rhizosphaerae TaxID=2570323 RepID=UPI001FE99BFE) HSP 1 Score: 174 bits (441), Expect = 3.250e-49 Identity = 94/162 (58.02%), Postives = 115/162 (70.99%), Query Frame = 1
Query: 1 MGTRTTRVENEIIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVGADDPDFEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQL 486
M + V ++ LPR+RRFAR+++R + DADDLVQL VERAL R DQWQ G +RIMKNAWIDE R R R+ AP EAGE+VG D E+R MAV++AM TL DDQRL V LVLVEGL YKEA+ V+D+P+GTLTSRLAR R+A++A L
Sbjct: 15 MSASSELVREQLAGLLPRLRRFARAITRHREDADDLVQLAVERALVRCDQWQPGTRLDSWVFRIMKNAWIDEVRARARRDELFAPEEAGEHVG--DAVMERRTDMMAVQQAMATLNDDQRLVVGLVLVEGLPYKEAAEVLDIPIGTLTSRLARAREALQAAL 174
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: A0A0C5XNQ7_SPHYB (RNA polymerase sigma70 n=25 Tax=Sphingomonadales TaxID=204457 RepID=A0A0C5XNQ7_SPHYB) HSP 1 Score: 173 bits (438), Expect = 5.140e-49 Identity = 92/159 (57.86%), Postives = 115/159 (72.33%), Query Frame = 1
Query: 25 ENEIIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVG-ADDPDFEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQLNPSA 498
E++++ LPR+RRFA SLSRD+ADADDL Q +E+AL DQWQ G YRIM+N WIDE R RQR R AP EAGE+VG A D D E + V+RAM++LPD+QR A++LVLVEGLSY+EA+ V+D+PMGTLTSRL RGR A+ L +A
Sbjct: 4 ESDLLAILPRLRRFAASLSRDRADADDLCQAALEKALRARDQWQPGTRLDSWMYRIMRNLWIDEGRSRQRAARTFAPEEAGEHVGHAGDRDVEAHVMLSDVDRAMQSLPDEQREAIALVLVEGLSYREAAEVLDIPMGTLTSRLVRGRGALIELLGEAA 162
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: A0A0Q8M800_9CAUL (RNA polymerase subunit sigma-70 n=1 Tax=Phenylobacterium sp. Root700 TaxID=1736591 RepID=A0A0Q8M800_9CAUL) HSP 1 Score: 172 bits (437), Expect = 6.580e-49 Identity = 92/152 (60.53%), Postives = 114/152 (75.00%), Query Frame = 1
Query: 34 IIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVGADDPD-FEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQL 486
++E LPR+RRFAR L+R ADADDLVQLTVERAL R QW G +RIMKNAWIDETR R+R+ AP EAGE+VG + E+R+ A+ VER + LP+DQRLAV+LVL+EGLSY+EA+ V++VPMGTLTSRL RGR + A+L
Sbjct: 1 MVELLPRLRRFARVLARTPADADDLVQLTVERALARTQQWTVGTRLDSWMFRIMKNAWIDETRARRRRDLVFAPEEAGEHVGDEGAARVERRLEAVEVERELARLPEDQRLAVALVLIEGLSYREAADVLEVPMGTLTSRLVRGRNQVLARL 152
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Match: A0A2N5CW37_9CAUL (RNA polymerase subunit sigma-70 n=16 Tax=Caulobacter TaxID=75 RepID=A0A2N5CW37_9CAUL) HSP 1 Score: 172 bits (436), Expect = 9.260e-49 Identity = 91/153 (59.48%), Postives = 115/153 (75.16%), Query Frame = 1
Query: 34 IIEYLPRMRRFARSLSRDQADADDLVQLTVERALTRLDQWQAGXXXXXXXYRIMKNAWIDETRRRQRQGRHHAPPEAGENVGADD--PDFEKRMRAMAVERAMETLPDDQRLAVSLVLVEGLSYKEASSVMDVPMGTLTSRLARGRKAMEAQL 486
+++ LPR+RR AR L+RD ADADDL QLTVERAL R DQW+ G +RIM+NAWIDE+R R R GR APPEAG + AD P + R+ AVE A++ LP+DQR+AV+LVL+EGLSY+EA+ +D+PMGTLTSRLARGR A++A L
Sbjct: 1 MLDLLPRLRRMARVLARDPADADDLTQLTVERALARRDQWREGTRQDSWMFRIMRNAWIDESRSRARHGRVLAPPEAGMHA-ADPAAPSLDGRLALTAVEAALDALPEDQRIAVALVLIEGLSYQEAADSLDIPMGTLTSRLARGRTALQAAL 152 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10382.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10382.1.1 >prot_D-mesarthrocarpus_Contig10382.1.1 ID=prot_D-mesarthrocarpus_Contig10382.1.1|Name=mRNA_D-mesarthrocarpus_Contig10382.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=248bp MIDDETLIAFMDGELNDAGMDRVAAAIDADPALAERLDALQTTDTAIRETback to top mRNA from alignment at D-mesarthrocarpus_Contig10382:131..1388- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10382.1.1 ID=mRNA_D-mesarthrocarpus_Contig10382.1.1|Name=mRNA_D-mesarthrocarpus_Contig10382.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1258bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10382:131..1388- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10382:131..1388- >mRNA_D-mesarthrocarpus_Contig10382.1.1 ID=mRNA_D-mesarthrocarpus_Contig10382.1.1|Name=mRNA_D-mesarthrocarpus_Contig10382.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=744bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10382:131..1388- (Discosporangium mesarthrocarpum MT17_79)back to top |