mRNA_D-mesarthrocarpus_Contig1037.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1037.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig1037.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1037.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1037contigD-mesarthrocarpus_Contig1037:2099..2698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size602
Hectar predicted targeting categoryother localisation
Exons1
Cds size576
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789176.1963217-UTR-D-mesarthrocarpus_Contig1037:2098..21221680789176.1963217-UTR-D-mesarthrocarpus_Contig1037:2098..2122Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1037 2099..2122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789176.2277968-CDS-D-mesarthrocarpus_Contig1037:2122..26981680789176.2277968-CDS-D-mesarthrocarpus_Contig1037:2122..2698Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1037 2123..2698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1037.2.1prot_D-mesarthrocarpus_Contig1037.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1037 2123..2698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1037.2.1

>prot_D-mesarthrocarpus_Contig1037.2.1 ID=prot_D-mesarthrocarpus_Contig1037.2.1|Name=mRNA_D-mesarthrocarpus_Contig1037.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=192bp
MFDDSTLCAVGESWLYFCVFLATVCSFRKVSWPPDPDLLYLLKVKECFML
SGLGSGPPHVGVWWCRRACSLRVLLTSLYPVLGATVDRACLVLGASAACC
VCGFGNCTRPSRSVHLLQHACKHGCPVPRAIASCYCALVNQGYVGPTSVR
ALLQCYSDCGTAKCVPVLHFSGWAVVCALTPRGLCPATGVEQ
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mRNA from alignment at D-mesarthrocarpus_Contig1037:2099..2698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1037.2.1 ID=mRNA_D-mesarthrocarpus_Contig1037.2.1|Name=mRNA_D-mesarthrocarpus_Contig1037.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=600bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1037:2099..2698+ (Discosporangium mesarthrocarpum MT17_79)
GCGAGCCTGACGACAGTGAGTGTGATGTTTGATGACAGTACGCTGTGTGC
AGTGGGGGAGAGCTGGCTCTACTTCTGTGTCTTCCTCGCCACGGTGTGTA
GTTTTAGGAAGGTGTCTTGGCCACCCGACCCTGATCTCTTGTATCTACTT
AAGGTTAAGGAGTGCTTCATGCTCTCGGGGCTTGGGAGCGGCCCTCCGCA
TGTTGGAGTGTGGTGGTGCAGGCGTGCGTGCAGTTTGCGTGTGTTGCTCA
CAAGCTTGTACCCGGTACTAGGTGCCACAGTAGATAGGGCATGCTTGGTG
CTCGGAGCCAGTGCGGCATGTTGTGTGTGTGGGTTTGGTAACTGCACGCG
CCCCTCACGTTCTGTGCATCTGCTACAGCACGCTTGCAAGCACGGGTGCC
CAGTGCCCAGAGCCATTGCCTCATGCTACTGCGCGCTTGTAAACCAGGGG
TACGTTGGTCCCACATCAGTGCGTGCACTGCTTCAATGCTATTCGGATTG
TGGTACTGCAAAGTGTGTGCCAGTGCTGCATTTCTCAGGTTGGGCTGTCG
TTTGTGCTCTCACTCCCAGAGGTTTGTGCCCCGCCACAGGTGTGGAACAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1037:2099..2698+

>mRNA_D-mesarthrocarpus_Contig1037.2.1 ID=mRNA_D-mesarthrocarpus_Contig1037.2.1|Name=mRNA_D-mesarthrocarpus_Contig1037.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=576bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1037:2099..2698+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTTGATGACAGTACGCTGTGTGCAGTGGGGGAGAGCTGGCTCTACTT
CTGTGTCTTCCTCGCCACGGTGTGTAGTTTTAGGAAGGTGTCTTGGCCAC
CCGACCCTGATCTCTTGTATCTACTTAAGGTTAAGGAGTGCTTCATGCTC
TCGGGGCTTGGGAGCGGCCCTCCGCATGTTGGAGTGTGGTGGTGCAGGCG
TGCGTGCAGTTTGCGTGTGTTGCTCACAAGCTTGTACCCGGTACTAGGTG
CCACAGTAGATAGGGCATGCTTGGTGCTCGGAGCCAGTGCGGCATGTTGT
GTGTGTGGGTTTGGTAACTGCACGCGCCCCTCACGTTCTGTGCATCTGCT
ACAGCACGCTTGCAAGCACGGGTGCCCAGTGCCCAGAGCCATTGCCTCAT
GCTACTGCGCGCTTGTAAACCAGGGGTACGTTGGTCCCACATCAGTGCGT
GCACTGCTTCAATGCTATTCGGATTGTGGTACTGCAAAGTGTGTGCCAGT
GCTGCATTTCTCAGGTTGGGCTGTCGTTTGTGCTCTCACTCCCAGAGGTT
TGTGCCCCGCCACAGGTGTGGAACAA
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