mRNA_D-mesarthrocarpus_Contig10360.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10360.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10360.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.600e-17
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    7 VKASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            +KA L W +V+R+GPGLRNLGNTCF+NATLQCL+Y PPLAQHLL G Y
Sbjct:  253 IKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFY 300
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: S9XF22_CAMFR (USP domain-containing protein n=4 Tax=Artiodactyla TaxID=91561 RepID=S9XF22_CAMFR)

HSP 1 Score: 74.3 bits (181), Expect = 7.910e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL WGRVYR+G GL NLGNTCF+N+T+QCL YTPPLA +LL  ++
Sbjct:  109 RLSLRWGRVYRVGAGLHNLGNTCFLNSTVQCLTYTPPLANYLLSREH 155
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A287AHU2_PIG (Ubiquitin specific peptidase 36 n=4 Tax=Sus scrofa TaxID=9823 RepID=A0A287AHU2_PIG)

HSP 1 Score: 74.3 bits (181), Expect = 8.700e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL WGRVYR+G GL NLGNTCF+N+T+QCL YTPPLA +LL  ++
Sbjct:  115 RLSLRWGRVYRVGAGLHNLGNTCFLNSTVQCLTYTPPLANYLLSREH 161
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A2D4JT96_9SAUR (USP domain-containing protein (Fragment) n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4JT96_9SAUR)

HSP 1 Score: 72.4 bits (176), Expect = 9.880e-15
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL W RVYR+G GL NLGNTCF+N+TLQCL YTPPLA +LL  ++
Sbjct:  107 RLSLKWERVYRVGAGLHNLGNTCFLNSTLQCLTYTPPLANYLLSKEH 153
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A8C4SYK6_ERPCA (USP domain-containing protein n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4SYK6_ERPCA)

HSP 1 Score: 72.8 bits (177), Expect = 1.850e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            K +L W RVYR+G GL NLGNTCF+NAT+QCL YTPPLA +LL  ++
Sbjct:  109 KLTLKWERVYRVGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEH 155
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A8C0I5X8_BALMU (USP domain-containing protein n=1 Tax=Balaenoptera musculus TaxID=9771 RepID=A0A8C0I5X8_BALMU)

HSP 1 Score: 74.3 bits (181), Expect = 1.890e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL WGRVYR+G GL NLGNTCF+N+T+QCL YTPPLA +LL  ++
Sbjct:  109 RLSLRWGRVYRVGAGLHNLGNTCFLNSTVQCLTYTPPLANYLLSKEH 155
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A287AQA2_PIG (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Artiodactyla TaxID=91561 RepID=A0A287AQA2_PIG)

HSP 1 Score: 74.3 bits (181), Expect = 2.840e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL WGRVYR+G GL NLGNTCF+N+T+QCL YTPPLA +LL  ++
Sbjct:  109 RLSLRWGRVYRVGAGLHNLGNTCFLNSTVQCLTYTPPLANYLLSREH 155
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BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A455C045_PHYMC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455C045_PHYMC)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL WGRVYR+G GL NLGNTCF+N+T+QCL YTPPLA +LL  ++
Sbjct:  109 RLSLRWGRVYRVGAGLHNLGNTCFLNSTVQCLTYTPPLANYLLSKEH 155
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A8D0JX23_PIG (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0JX23_PIG)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL WGRVYR+G GL NLGNTCF+N+T+QCL YTPPLA +LL  ++
Sbjct:  115 RLSLRWGRVYRVGAGLHNLGNTCFLNSTVQCLTYTPPLANYLLSREH 161
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Match: A0A455C492_PHYMC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Odontoceti TaxID=9722 RepID=A0A455C492_PHYMC)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 KASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY 150
            + SL WGRVYR+G GL NLGNTCF+N+T+QCL YTPPLA +LL  ++
Sbjct:  109 RLSLRWGRVYRVGAGLHNLGNTCFLNSTVQCLTYTPPLANYLLSKEH 155
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10360.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJN5_9PHAE1.600e-1775.00USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
S9XF22_CAMFR7.910e-1565.96USP domain-containing protein n=4 Tax=Artiodactyla... [more]
A0A287AHU2_PIG8.700e-1565.96Ubiquitin specific peptidase 36 n=4 Tax=Sus scrofa... [more]
A0A2D4JT96_9SAUR9.880e-1565.96USP domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A8C4SYK6_ERPCA1.850e-1465.96USP domain-containing protein n=1 Tax=Erpetoichthy... [more]
A0A8C0I5X8_BALMU1.890e-1465.96USP domain-containing protein n=1 Tax=Balaenoptera... [more]
A0A287AQA2_PIG2.840e-1465.96Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Arti... [more]
A0A455C045_PHYMC2.850e-1465.96Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phys... [more]
A0A8D0JX23_PIG2.850e-1465.96Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Sus ... [more]
A0A455C492_PHYMC2.850e-1465.96Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Odon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10360contigD-mesarthrocarpus_Contig10360:2174..2323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LD97
PFAMsUCH
Model size150
Max annot lvl2759|Eukaryota
KEGG koko:K11855
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
Exons1
Evalue1.92e-18
EggNOG OGsKOG1865@1|root,KOG1865@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size150
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789175.713855-CDS-D-mesarthrocarpus_Contig10360:2173..23231680789175.713855-CDS-D-mesarthrocarpus_Contig10360:2173..2323Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10360 2174..2323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10360.2.1prot_D-mesarthrocarpus_Contig10360.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10360 2174..2323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10360.2.1

>prot_D-mesarthrocarpus_Contig10360.2.1 ID=prot_D-mesarthrocarpus_Contig10360.2.1|Name=mRNA_D-mesarthrocarpus_Contig10360.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=50bp
AAVKASLAWGRVYRLGPGLRNLGNTCFVNATLQCLAYTPPLAQHLLQGKY
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mRNA from alignment at D-mesarthrocarpus_Contig10360:2174..2323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10360.2.1 ID=mRNA_D-mesarthrocarpus_Contig10360.2.1|Name=mRNA_D-mesarthrocarpus_Contig10360.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10360:2174..2323+ (Discosporangium mesarthrocarpum MT17_79)
GCTGCGGTGAAGGCGAGTCTCGCCTGGGGCCGGGTGTACCGCCTGGGTCC
CGGGCTGCGGAACCTGGGCAACACATGCTTCGTGAATGCCACTCTCCAGT
GCCTGGCCTACACGCCCCCCCTGGCACAGCATCTGCTGCAGGGGAAGTAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10360:2174..2323+

>mRNA_D-mesarthrocarpus_Contig10360.2.1 ID=mRNA_D-mesarthrocarpus_Contig10360.2.1|Name=mRNA_D-mesarthrocarpus_Contig10360.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10360:2174..2323+ (Discosporangium mesarthrocarpum MT17_79)
GCTGCGGTGAAGGCGAGTCTCGCCTGGGGCCGGGTGTACCGCCTGGGTCC
CGGGCTGCGGAACCTGGGCAACACATGCTTCGTGAATGCCACTCTCCAGT
GCCTGGCCTACACGCCCCCCCTGGCACAGCATCTGCTGCAGGGGAAGTAC
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