mRNA_D-mesarthrocarpus_Contig10358.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10358.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10358.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A835YS18_9STRA (WD40-repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS18_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.300e-28
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   19 LTLID--TFEEVKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            +T +D  T E +K+H MP+NFKNEGGASLHP+G RFIAGGSDLWVRVFD+ TG E+ECLKGHHGP
Sbjct:  215 VTFLDARTLEVIKQHQMPINFKNEGGASLHPSGKRFIAGGSDLWVRVFDFETGAELECLKGHHGP 279          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A6H5KS17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS17_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.940e-25
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   10 TAHLTLIDTFEEVKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLK-------GHHGP 207
            T H        EVKRH MP+NF+NEGGASLHP G RFIAGGSDLWVRVFD+ TG E+ECLK       GHHGP
Sbjct:  174 TVHFFDTGDLSEVKRHTMPINFRNEGGASLHPGGKRFIAGGSDLWVRVFDFDTGAELECLKASRGRARGHHGP 246          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A7R9Z9Z2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9Z2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.620e-24
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:   28 IDTFEEVKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            + T+E V+ HPMP++F++EGGASLHP G +F+AGGSDLWVR+FD+ +GKE+EC KGHHGP
Sbjct:  255 LSTYELVRSHPMPIHFRDEGGASLHPDGKKFVAGGSDLWVRLFDFDSGKELECHKGHHGP 314          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A7S2WFT6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFT6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.010e-22
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   55 HPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            H MP++F+ EGGAS+HPAGDRFIAGGSD WVRVFD  TG E EC KGHHGP
Sbjct:   58 HTMPISFREEGGASMHPAGDRFIAGGSDTWVRVFDRQTGTETECHKGHHGP 108          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A7S2WLX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLX8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.070e-22
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   34 TFEEVKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHG 204
            T E + +H MP+NF +EGGASLHP+G +FIAGGSDLWVRVFD+ +G E+EC KGHHG
Sbjct:   75 TGELLYKHKMPINFHDEGGASLHPSGAKFIAGGSDLWVRVFDFESGNELECNKGHHG 131          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A4D9D672_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D672_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-22
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 MCGTAHLTLIDTFE--EVKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            +C    +T +DT     +K  PMPM+F+ EGGASLHP    FIAGGSDLWVRVFDY TG E+EC KGHHGP
Sbjct:  211 VCAGDKVTFLDTATLLPIKSFPMPMHFREEGGASLHPDRQLFIAGGSDLWVRVFDYNTGAELECHKGHHGP 281          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A7S2XYA9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.310e-22
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   46 VKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            +K H MP+NF+ EGGASLHP   +FIAGGSDLWVRVFDY TG+E+EC KGHHGP
Sbjct:  228 LKAHQMPVNFREEGGASLHPDKTKFIAGGSDLWVRVFDYETGQELECHKGHHGP 281          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: W7TNK1_9STRA (Cell division protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNK1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.680e-22
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 MCGTAHLTLIDTFE--EVKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            +C    +T +DT     +K  PMPM+F+ EGGASLHP    FIAGGSDLWVRVFDY TG E+EC KGHHGP
Sbjct:  211 VCAGDKVTFLDTATLLPIKSFPMPMHFREEGGASLHPDRQLFIAGGSDLWVRVFDYNTGAELECHKGHHGP 281          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A7S2C514_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C514_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.930e-22
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   16 HLTLID--TFEEVKRHPMPM-NFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            H+++ D  TFE ++ H MP  +F+ EGGASLHP+GD+FIAGG D WVRVFD  TG E+EC KGHHGP
Sbjct:  147 HVSMFDAGTFELLQSHEMPSCSFREEGGASLHPSGDKFIAGGGDCWVRVFDRQTGAELECHKGHHGP 213          
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Match: A0A6U3S695_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S695_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.640e-21
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   55 HPMPMNFKNEGGASLHPAGDRFIAGGSDLWVRVFDYPTGKEMECLKGHHGP 207
            H MP++F++EGGASLHP G +F+AGGSDLWVRVFDY TG E+EC KGHHGP
Sbjct:  258 HQMPIHFRDEGGASLHPDGKKFVAGGSDLWVRVFDYETGTELECHKGHHGP 308          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10358.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS18_9STRA8.300e-2873.85WD40-repeat protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A6H5KS17_9PHAE1.940e-2565.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9Z9Z2_9STRA1.620e-2466.67Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2WFT6_9STRA1.010e-2276.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WLX8_9STRA1.070e-2268.42Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A4D9D672_9STRA1.120e-2261.97Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2XYA9_9STRA3.310e-2274.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TNK1_9STRA6.680e-2261.97Cell division protein n=1 Tax=Nannochloropsis gadi... [more]
A0A7S2C514_9STRA7.930e-2262.69Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U3S695_9STRA1.640e-2174.51Hypothetical protein n=6 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10358contigD-mesarthrocarpus_Contig10358:487..1494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr29212
PFAMsWD40
Model size207
Max annot lvl2836|Bacillariophyta
KEGG koko:K13137
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.11e-21
EggNOG OGsKOG0278@1|root,KOG0278@2759|Eukaryota,2XAGZ@2836|Bacillariophyta
DescriptionWD domain, G-beta repeat
Cds size207
COG categoryI
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789175.1775703-CDS-D-mesarthrocarpus_Contig10358:486..5011680789175.1775703-CDS-D-mesarthrocarpus_Contig10358:486..501Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10358 487..501 -
1680789175.1898155-CDS-D-mesarthrocarpus_Contig10358:1302..14941680789175.1898155-CDS-D-mesarthrocarpus_Contig10358:1302..1494Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10358 1303..1494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10358.2.1prot_D-mesarthrocarpus_Contig10358.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10358 487..1494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10358.2.1

>prot_D-mesarthrocarpus_Contig10358.2.1 ID=prot_D-mesarthrocarpus_Contig10358.2.1|Name=mRNA_D-mesarthrocarpus_Contig10358.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=69bp
MCGTAHLTLIDTFEEVKRHPMPMNFKNEGGASLHPAGDRFIAGGSDLWVR
VFDYPTGKEMECLKGHHGP
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mRNA from alignment at D-mesarthrocarpus_Contig10358:487..1494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10358.2.1 ID=mRNA_D-mesarthrocarpus_Contig10358.2.1|Name=mRNA_D-mesarthrocarpus_Contig10358.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1008bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10358:487..1494- (Discosporangium mesarthrocarpum MT17_79)
ATGTGTGGCACGGCACACCTGACCTTAATAGACACGTTCGAGGAGGTGAA ACGCCACCCCATGCCAATGAACTTCAAGAACGAGGGGGGTGCATCGCTCC ACCCGGCGGGGGACCGGTTCATTGCTGGGGGGTCGGACCTGTGGGTCCGA GTGTTTGACTACCCTACGGGGAAGGAGATGGAGTGCCTCAAGGTGTGTGT GTGTGACTAACTGCTGCTCTGCATGTAATGCAATGTGACCTATGACCCAT GAAGTGAAGGGCTCGCTGCACGCATGTGTCACCTCATCGAAAAGAAAAAG AAAAAGAAAGGGTTTCACTGCGTTGCACAGGCATAGTTTGCGGTGTAGTA CAATGCCTTGTCTTCATCCTCGACGCCCTGGTGCTTCTGATGTCCCTGGT GCACTGTAGTGGGCTGTAGTGACTTAGTACTACGTGATTGAGGGCTGGGT TAGTAGGGTTGGGTTAGGGTTGGGTTTTTTAGGGTTTGGGATAGTGCAGA GGTGCCTCGCTCAAAGCACAAGTGTGATCGACCGTTCATGCAGTATGTCC CCGCCCCTGAGGATTCGAGGGCATTGCGGCATTTACCATTCCACCGGCCT TACCGATCCTGGCTGGGTACCTTGACATACAAAAGCATAAGAGTAGACTT CAAGTGCTTTAGATCAACTCGATGCTTTGAATTACAGCCCCATGCTGATG TACATGACACATTGTGGATACATGAAGGATGGTTTAGTTGCCAACATGGC GCAGGCTCTATAGGCACAGGAAGGCTGGATGCAGAGCAGTACATAAGAGG TGACGGAAAAAGACATTTTTCGGAGACAAACCCTAGATCTAGAGGCCCAC AGGAGAAGTGGTACAGCACATGTCAATCCTGCTTGTCACCACCGCCACCA CCACCACCACCCTTGCAGGTTATGTCCCCCCCGCCCCTTGTGTGTGCCCC CACCACCTGCCTGCCCACCCCCTTTGCTGCTCTGAAACAACAGGGACACC ATGGACCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10358:487..1494-

>mRNA_D-mesarthrocarpus_Contig10358.2.1 ID=mRNA_D-mesarthrocarpus_Contig10358.2.1|Name=mRNA_D-mesarthrocarpus_Contig10358.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=207bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10358:487..1494- (Discosporangium mesarthrocarpum MT17_79)
ATGTGTGGCACGGCACACCTGACCTTAATAGACACGTTCGAGGAGGTGAA
ACGCCACCCCATGCCAATGAACTTCAAGAACGAGGGGGGTGCATCGCTCC
ACCCGGCGGGGGACCGGTTCATTGCTGGGGGGTCGGACCTGTGGGTCCGA
GTGTTTGACTACCCTACGGGGAAGGAGATGGAGTGCCTCAAGGGACACCA
TGGACCT
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