mRNA_D-mesarthrocarpus_Contig10337.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10337.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10337.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A7S1B6U7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6U7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.510e-26
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQ 237
            D+WSIGVI YILLCGYPPFYG +D +IF+SVRAGVFDFPSP+WD+I+ EAK+FI ALL  + AER TA++
Sbjct:  371 DIWSIGVITYILLCGYPPFYGDSDAQIFKSVRAGVFDFPSPDWDDISAEAKDFICALLRKNPAERLTANR 440
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A1E7FGU1_9STRA (Pkinase-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGU1_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.510e-26
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTA 231
            D+WSIGVI+YILLCGYPPFYG ND EIF SVR+G FD+PSPEWDEI+  AK+F+S LL +D   RPTA
Sbjct:  271 DIWSIGVISYILLCGYPPFYGDNDAEIFNSVRSGQFDYPSPEWDEISNSAKQFVSLLLQIDPEMRPTA 338
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A812UKM4_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UKM4_SYMMI)

HSP 1 Score: 107 bits (267), Expect = 6.090e-26
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQ 237
            DLWSIGV+ Y+LLCGYPPFYG  D EIF SV+ G FDFPSP+WD+I+ +AK FI A L +DA++RPTA +
Sbjct:  103 DLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTARE 172
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A812RCN9_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCN9_SYMMI)

HSP 1 Score: 107 bits (267), Expect = 1.070e-25
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQ 237
            DLWSIGV+ Y+LLCGYPPFYG  D EIF SV+ G FDFPSP+WD+I+ +AK FI A L +DA++RPTA +
Sbjct:  189 DLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTARE 258
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A6B2LC69_9EUKA (Protein kinase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LC69_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 1.320e-25
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   22 LADLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQ 237
            + D+WSIGVI YILLCG+PPFYG+ND +IF  +    +DFPSP+WD I+ EAKEFISA+L+LD  +RP AS+
Sbjct:  172 MVDIWSIGVITYILLCGFPPFYGNNDQQIFEKILKADYDFPSPDWDTISEEAKEFISAILVLDYNKRPNASE 243
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A6H5L236_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L236_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.450e-25
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQ 237
            DLWSIGVIAYILLCGYPPFYG  D +IF SV  G +DFP PEWD ++ +AK F+  LL+LD AERPTAS+
Sbjct:  220 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 289
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: K0RBU3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RBU3_THAOC)

HSP 1 Score: 102 bits (254), Expect = 1.640e-25
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQ 237
            D+WSIGVI YILLCGYPPFYG  D +IF SVR G FDFPSP+WD I+  AK+FI ++L LD ++R TAS+
Sbjct:   30 DIWSIGVITYILLCGYPPFYGDTDNQIFDSVRTGRFDFPSPDWDNISSTAKDFICSMLKLDGSKRMTASE 99
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: F0Y8X1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8X1_AURAN)

HSP 1 Score: 106 bits (265), Expect = 3.200e-25
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTAS 234
            D+WS+GVIAYILLCGYPPF+G ND EIFR V AG F FPSPEWD I+ +AK F+S LL LD  +RPTA+
Sbjct:  234 DIWSVGVIAYILLCGYPPFFGDNDKEIFRRVSAGSFTFPSPEWDHISGDAKAFVSTLLDLDPEKRPTAA 302
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A7S1GJQ2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ2_CYCTE)

HSP 1 Score: 105 bits (263), Expect = 7.360e-25
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQ 237
            D+WSIGVI YILLCGYPPFYG +D EIF SVR G +DFPSPEWD+I+ +AKEFI  LL +D  +R TA+Q
Sbjct:  273 DIWSIGVITYILLCGYPPFYGDSDNEIFESVRVGRYDFPSPEWDDISKDAKEFIGFLLKMDPTKRLTAAQ 342
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Match: A0A662YIG1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIG1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.520e-25
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   28 DLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSPEWDEITPEAKEFISALLILDAAERPTASQV 240
            DLWSIGVI YILLCGYPPFYG  D EIF SVRAG +DF SPEW  ++ EAK+ IS LL++DA++R TA +V
Sbjct:   80 DLWSIGVITYILLCGYPPFYGDTDPEIFASVRAGRYDFDSPEWTNVSSEAKDLISRLLLVDASKRLTAEEV 150
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10337.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1B6U7_9STRA1.510e-2671.43Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1E7FGU1_9STRA1.510e-2672.06Pkinase-domain-containing protein n=1 Tax=Fragilar... [more]
A0A812UKM4_SYMMI6.090e-2665.71Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A812RCN9_SYMMI1.070e-2565.71Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A6B2LC69_9EUKA1.320e-2562.50Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A6H5L236_9PHAE1.450e-2568.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0RBU3_THAOC1.640e-2565.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
F0Y8X1_AURAN3.200e-2569.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1GJQ2_CYCTE7.360e-2568.57Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A662YIG1_9STRA7.520e-2567.61Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10337contigD-mesarthrocarpus_Contig10337:236..484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009037159.1
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8,Pkinase
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categorysignal peptide
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
Exons1
Evalue5.25e-26
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size249
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789173.921326-CDS-D-mesarthrocarpus_Contig10337:235..4841680789173.921326-CDS-D-mesarthrocarpus_Contig10337:235..484Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10337 236..484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10337.1.1prot_D-mesarthrocarpus_Contig10337.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10337 236..484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10337.1.1

>prot_D-mesarthrocarpus_Contig10337.1.1 ID=prot_D-mesarthrocarpus_Contig10337.1.1|Name=mRNA_D-mesarthrocarpus_Contig10337.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=83bp
MSVFFFYLADLWSIGVIAYILLCGYPPFYGSNDVEIFRSVRAGVFDFPSP
EWDEITPEAKEFISALLILDAAERPTASQVRG*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10337:236..484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10337.1.1 ID=mRNA_D-mesarthrocarpus_Contig10337.1.1|Name=mRNA_D-mesarthrocarpus_Contig10337.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=249bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10337:236..484+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGTGTTTTTTTTTTTTATCTGGCAGATCTTTGGTCCATCGGGGTGAT
TGCGTACATACTGCTGTGCGGCTACCCCCCCTTCTACGGCTCCAACGACG
TGGAGATATTCCGGAGTGTTAGGGCCGGGGTGTTCGACTTCCCCAGCCCA
GAGTGGGACGAGATCACCCCAGAGGCCAAGGAGTTCATATCAGCGCTGCT
CATCCTCGATGCTGCTGAGCGACCCACCGCCTCCCAGGTACGGGGGTGA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10337:236..484+

>mRNA_D-mesarthrocarpus_Contig10337.1.1 ID=mRNA_D-mesarthrocarpus_Contig10337.1.1|Name=mRNA_D-mesarthrocarpus_Contig10337.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=249bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10337:236..484+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGTGTTTTTTTTTTTTATCTGGCAGATCTTTGGTCCATCGGGGTGAT
TGCGTACATACTGCTGTGCGGCTACCCCCCCTTCTACGGCTCCAACGACG
TGGAGATATTCCGGAGTGTTAGGGCCGGGGTGTTCGACTTCCCCAGCCCA
GAGTGGGACGAGATCACCCCAGAGGCCAAGGAGTTCATATCAGCGCTGCT
CATCCTCGATGCTGCTGAGCGACCCACCGCCTCCCAGGTACGGGGGTGA
back to top