mRNA_D-mesarthrocarpus_Contig10322.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10322.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10322.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10322.3.1 vs. uniprot
Match: A0A6H5L6Y2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.160e-9
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  672 VQVNGRSRRNVYYSGLARAALGQWKEAADAFRQAISEDKESGCFCASGGERDISGFLYEQASKGLE 869
            V VNGRSRRNVYY+GL R A G  + AA+ FR+A+S+D+   C  AS  ERD++  L EQA +GL+
Sbjct:  430 VNVNGRSRRNVYYAGLGRLACGDKRGAAEMFRRAVSDDQ---CENASPTERDVAVSLREQAQRGLD 492
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10322.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6Y2_9PHAE3.160e-954.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10322contigD-mesarthrocarpus_Contig10322:3439..4381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size943
Hectar predicted targeting categoryother localisation
Exons1
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.8685281-UTR-D-mesarthrocarpus_Contig10322:3438..34851680789172.8685281-UTR-D-mesarthrocarpus_Contig10322:3438..3485Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10322 3439..3485 -
1680789172.8934848-UTR-D-mesarthrocarpus_Contig10322:3746..43811680789172.8934848-UTR-D-mesarthrocarpus_Contig10322:3746..4381Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10322 3747..4381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.8818302-CDS-D-mesarthrocarpus_Contig10322:3485..37461680789172.8818302-CDS-D-mesarthrocarpus_Contig10322:3485..3746Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10322 3486..3746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10322.3.1prot_D-mesarthrocarpus_Contig10322.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10322 3486..3746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10322.3.1

>prot_D-mesarthrocarpus_Contig10322.3.1 ID=prot_D-mesarthrocarpus_Contig10322.3.1|Name=mRNA_D-mesarthrocarpus_Contig10322.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=87bp
MLHFRAQCSSPHVQVNGRSRRNVYYSGLARAALGQWKEAADAFRQAISED
KESGCFCASGGERDISGFLYEQASKGLEVALKRATE*
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mRNA from alignment at D-mesarthrocarpus_Contig10322:3439..4381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10322.3.1 ID=mRNA_D-mesarthrocarpus_Contig10322.3.1|Name=mRNA_D-mesarthrocarpus_Contig10322.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=943bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10322:3439..4381- (Discosporangium mesarthrocarpum MT17_79)
CGTTACAGCGCCCACCGAGAAGGGTCGCTGCTTCCTTAATTGATCTTCTA
AGGACTGTGGTGTTTCTTGTATGGGGTGAGTGGGAATGAAACCCCCGTGC
GCCCTCGGTGTCTGTTGGTATCCACGTGTGCTTCTGCTGTACCTTGTGCT
CCTCCCCTCTGGGCACCAATCAATGCTCTGGGCACTGATGTTTTGACCAC
TCTCGAGCTCTGGGTGTCATGTTACCTGTGCTGTGACAATTTCTCTCTGT
GTCTCCCGACCTGAAGCATGTAGAAGTCTGAATTAATGGGGTTTGATGGC
TTGTGTGTTTTTTCTTGCCCCTGACTGCCAGTGGGCGCCTGGATCACTGA
TGACTCTCCTTGGGGGAGCAGTGTCTTGTTTTCTATTTAGTTCGTCTGTT
GGGGGTGGATGATAAGGGGCTGCTCACTGCGGGATACTAATGCTTGTAGC
ATTTGCTGTTGGTTGAGCGGATGCCTTGCTAAATATTGATGACCCCCTAA
CCCCAAACCGAGCCAGTGCGGGGTGCAGCTTTGTAAACCTCCACCAAGCA
CCACACTACACCGTGAGAGCAAAACACTTGCCTGCCACACCCCTCCCTTC
CTTTCTGCGCATCCCCGCTTCCCCCTACACCTCCTATGCTCCACTTCCGG
GCACAATGCTCCTCCCCTCACGTCCAGGTAAATGGGCGGAGCAGACGCAA
TGTGTACTACTCTGGGCTAGCCCGGGCAGCTCTGGGGCAGTGGAAAGAAG
CAGCAGATGCCTTCCGCCAAGCAATTTCTGAGGACAAGGAGAGCGGCTGC
TTCTGTGCCTCGGGGGGAGAGAGGGATATTTCTGGCTTCCTTTATGAGCA
GGCATCTAAGGGGCTGGAGGTGGCGTTAAAGCGGGCAACAGAATGATAAC
TAACTTTTTATTATTATACCTGTTGGGTTCGCAAGTTACAGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10322:3439..4381-

>mRNA_D-mesarthrocarpus_Contig10322.3.1 ID=mRNA_D-mesarthrocarpus_Contig10322.3.1|Name=mRNA_D-mesarthrocarpus_Contig10322.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=261bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10322:3439..4381- (Discosporangium mesarthrocarpum MT17_79)
ATGCTCCACTTCCGGGCACAATGCTCCTCCCCTCACGTCCAGGTAAATGG
GCGGAGCAGACGCAATGTGTACTACTCTGGGCTAGCCCGGGCAGCTCTGG
GGCAGTGGAAAGAAGCAGCAGATGCCTTCCGCCAAGCAATTTCTGAGGAC
AAGGAGAGCGGCTGCTTCTGTGCCTCGGGGGGAGAGAGGGATATTTCTGG
CTTCCTTTATGAGCAGGCATCTAAGGGGCTGGAGGTGGCGTTAAAGCGGG
CAACAGAATGA
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