Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10321.3.1 vs. uniprot
Match:
A0A6H5JC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC00_9PHAE)
HSP 1 Score: 98.2 bits (243), Expect = 6.890e-19
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 3
Query: 177 CYNPR---AGIVTSIMKDNPRLKPQGLAYISIRAGGAGLKVVTDDGFT-GTVVDVPYPTRSDVESAHPPAKSRDSKSSDQSVR------LEEQVAKEKARKAAKLEAMQKKLDKLKAAR 503
C P AG+VTS++ + P GLAYI +AGG GLK+ T +G + GTVV VPYPTRSD ESA PPAK ++ S D++ LEE+ AKEKARKAAKLEAMQKK+D LKA R
Sbjct: 423 CRKPERGDAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKLSTKEGESLGTVVQVPYPTRSDAESAMPPAK-KEGDSGDKATAAAAVLGLEEEKAKEKARKAAKLEAMQKKVDALKARR 540
BLAST of mRNA_D-mesarthrocarpus_Contig10321.3.1 vs. uniprot
Match:
D8LH90_ECTSI (Folate-binding protein YgfZ n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH90_ECTSI)
HSP 1 Score: 97.4 bits (241), Expect = 1.260e-18
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 3
Query: 192 AGIVTSIMKDNPRLKPQGLAYISIRAGGAGLKVVTDDGFT-GTVVDVPYPTRSDVESAHPPAKSRDSKSSDQSVR------LEEQVAKEKARKAAKLEAMQKKLDKLKAAR 503
AG+VTS++ + P GLAYI +AGG GLK+ T +G GTVV VPYPTRSD ESA PPAK ++ S D++ LEE+ AKEKARKAAKLEAMQKK+D LKA R
Sbjct: 432 AGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKLSTKEGEPLGTVVQVPYPTRSDAESAMPPAK-KEGDSGDKATAAAAVLGLEEEKAKEKARKAAKLEAMQKKIDALKARR 541
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10321.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 6.89e-19 / Id = 56.30 Expect = 1.26e-18 / Id = 58.56 Sequence A0A6H5JC00_9PHAE D8LH90_ECTSI
Match Name E-value Identity Description
A0A6H5JC00_9PHAE 6.890e-19 56.30 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LH90_ECTSI 1.260e-18 58.56 Folate-binding protein YgfZ n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D8LH90 PFAMs GCV_T,GCV_T_C Model size 1046 Max annot lvl 2759|Eukaryota KEGG rclass RC00022,RC00069,RC00183,RC02834 KEGG ko ko:K00605 KEGG Reaction R01221,R02300,R04125 KEGG Pathway ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200 KEGG Module M00532 Hectar predicted targeting category other localisation GOs GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006790,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0055114,GO:0071840 Exons 3 Evalue 7.44e-19 EggNOG OGs COG0404@1|root,KOG2770@2759|Eukaryota Ec32 ortholog description Glycine cleavage T-protein, C-terminal barrel domain Ec32 ortholog Ec-24_001010.1 EC 2.1.2.10 Description aminomethyltransferase activity Cds size 312 COG category E BRITE ko00000,ko00001,ko00002,ko01000
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789172.7930768-UTR-D-mesarthrocarpus_Contig10321:1924..2446 1680789172.7930768-UTR-D-mesarthrocarpus_Contig10321:1924..2446 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig10321 1925..2446 - 1680789172.8346636-UTR-D-mesarthrocarpus_Contig10321:4011..4223 1680789172.8346636-UTR-D-mesarthrocarpus_Contig10321:4011..4223 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig10321 4012..4223 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789172.8047638-CDS-D-mesarthrocarpus_Contig10321:2446..2521 1680789172.8047638-CDS-D-mesarthrocarpus_Contig10321:2446..2521 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10321 2447..2521 - 1680789172.8141048-CDS-D-mesarthrocarpus_Contig10321:2969..3131 1680789172.8141048-CDS-D-mesarthrocarpus_Contig10321:2969..3131 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10321 2970..3131 - 1680789172.8237019-CDS-D-mesarthrocarpus_Contig10321:3936..4011 1680789172.8237019-CDS-D-mesarthrocarpus_Contig10321:3936..4011 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10321 3937..4011 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10321.3.1
>prot_D-mesarthrocarpus_Contig10321.3.1 ID=prot_D-mesarthrocarpus_Contig10321.3.1|Name=mRNA_D-mesarthrocarpus_Contig10321.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=104bp
MKDNPRLKPQGLAYISIRAGGAGLKVVTDDGFTGTVVDVPYPTRSDVESA back to top mRNA from alignment at D-mesarthrocarpus_Contig10321:1925..4223-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10321.3.1 ID=mRNA_D-mesarthrocarpus_Contig10321.3.1|Name=mRNA_D-mesarthrocarpus_Contig10321.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2299bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10321:1925..4223- (Discosporangium mesarthrocarpum MT17_79)GGGGGCCACAGAAGGGGCAGGGCAGGGGCAGGGCTGCAGGTATGCACTGT
CGTTGCTCACTTGTTTTTTCCATGGTTGATAGCCGTGTAAGTCAACACAC
TGCAGTACAGTGTATACGTATGGTTTCTGACCAATGGCTTGCAAGCTGAA
GGCATGTGGCGCTGTTGCCCGCTGATTGTTACAACCCCAGAGCCGGTATA
GTGACTTCGATT ATGAAGGACAACCCCAGGCTGAAGCCCCAGGGCCTGGC
GTACATCAGCATCAGAGCAGGGGGCGCTGGGTTGAAG GTGACAGCAGCCC
CTATGTCATTTTTTTTTTGTTTTTCGCAGGAAGAGGCAAAGCTGACGCAC
GTTCAGATGCTCTACCACTCTACTACTGCACCAATCTGCTGTTGTGTGTC
TCTCCCGTCTCAGTTCTCACTTCAGCTCCGCCCCTGCTCTTGTGGGGTGG
GCCTCCAGAGCCTAAATATGACTGCTGTGGGTGTGGACTGACCTCAAATT
TGTTGTCGTTGGTGCACATCTGCCTCGTGCTGATCTTTTCTGTTGATGCG
TGGAAGATGATGACAAGTGACAAGGGGGGGGAGGCTTGATGTGCTTGCCC
TTATCAGCAGTGGGTGTGTGGGTGTGGGTGTGTCTTTTTTTTCTGTTCGG
TTTGTTTCTCTTGATCACGTGTTTTCTTGTCCGCATTGGGACCGCATGTA
AAAGAAGAGAAAAAAAAAAAAGATGTACCACGGAGTGAAAAGGTCAGGAG
TCTCTCTTGCGGCTTTTTGTTTTTTTTGTGTGCATGGGGTGGGGTCAAGC
CATACATTCGTGGGCTGGATCAATGTGAAAGGGGGCGGCAAAAATCACAA
ACTTATTGTGATTATATGGCACTTACCCTAACTCTAACCCTAACCCTAAC
CCTAGCAAACGTGACAACACACACATACTGCAGCAGCATATATAGCACAC
AGGCTTTCTGAGAGCTGCAAAGCACTTTGCACGGTGGTATTGCACATGCA
TACATGGCCGAGCTGCACCACCACAGGTTTCCTTGGGAACAAGATGGAGC
AGTTTCAGTGCCTGACAACAGACACCCTCCAATGCTCTGCAGGTGGTAAC
GGATGACGGGTTTACAGGAACAGTGGTGGATGTGCCATACCCCACGAGGT
CAGACGTCGAGAGCGCACACCCCCCCGCCAAGAGTCGAGACTCCAAGTCG
AGTGATCAGTCTGTTCGATTGGAAGAACAGGTTGCAAAGGAGAAGGCAAG
GAAG GTGGGTTGTATTTATTGCTACAGAACCGCTCCAGAGCATGCAGTGT
TGGATGTTTTGTTGCCGTGATAACTTCCATCCAGCTGGTGCCATTTTTTT
TATTTGTTTTTTTTTTTCTCGGAGTGCCTGTTGCTTCAAAGTCAAGAAAT
TATTCGACCGACACGGAAGGTAGCAGTGAGTGCCCTATCGTCCTAGACGC
CCTTGCATCCCCCTCTGACTCTCACAGAGCACCCACCAACAGTAGCTTCA
TTGCCTGTACAGAACGTGGTCGTACCCGTGGCAAACGGCGAACGGGTGGG
AGGACTTGGAAGAGACGTTGATGCCACTGCAAGACTTCTGTTTCTCATTG
GTTCCTTGTTTGTTAATGCGGTGCCGTGTGTGCTCTACCCCTGCGCCCAC
TACATGCCTCTTGCCTCCTCCTCCTCCTTCATGATTCGATTGCTGCCGGC
AGGCTGCAAAGCTAGAAGCCATGCAGAAGAAACTGGACAAGCTCAAGGCA
GCACGGGGGAAGAAAGCAGCGGGCTGA CCCAAACAAAATTTGCCCACGAC
CCAAATACATCTGTGCCCTGTTTCGAGGAACGCAATTTAGAGCTCCCAAA
CCATGCGTGGGACTCAGGAAATTGTTTGTGTTGCAATTCTGGAATTCAGC
ACCAGGCAGAGGAACTGTTTGTCCTCATTTTTCTCTTTTATTGTGCTTTA
GTTAGAGAGCTCACTGTGTGTGTACCCTGCAGCAGAGACTCGGATAAAGA
TGGGAACCATATTTATCGGGGGGGGGGGGAGGTATTTGTGGATCATCGTA
TAGAGAAAAGAGGATGACAAGAAAGTATCCTTGAGCAGGAAGACAAGAAA
ATCATCTTGCCGGAGCCAGAGGAGAAATCAGCAAGGAAGGACCCTGTCCA
TTGCTGCACACTTTTGTTATTCCAACAAGAATAATTCTGAACTGGGTGTG
AGTTTTCATTGGATGTGAAACACATTTTTTACACTTGAGAGTATCTCATT
GACTTTGCACCCCATGAAAAAGTAATACCATGAGAAACCTGAGGATGAC back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10321:1925..4223-
>mRNA_D-mesarthrocarpus_Contig10321.3.1 ID=mRNA_D-mesarthrocarpus_Contig10321.3.1|Name=mRNA_D-mesarthrocarpus_Contig10321.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=312bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10321:1925..4223- (Discosporangium mesarthrocarpum MT17_79) back to top