mRNA_D-mesarthrocarpus_Contig10314.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10314.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10314.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A484KNC4_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KNC4_9ASTE)

HSP 1 Score: 91.7 bits (226), Expect = 1.450e-19
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  144 GDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETL-EVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLPVC 440
            G +I L  QP NSPD+N+  LGFF +IQ LKE     +  + VEA   A+     ETL +VW S   V+ +V+  +G N+YKLPH++K++ AR G LPVC
Sbjct:  132 GFNITLSNQPPNSPDLNILDLGFFRAIQSLKEKCAPKNVAELVEAVRGAYAALTAETLNKVWLSYQDVMQQVMNDEGGNKYKLPHMAKDRLARQGALPVC 231
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A484L7M4_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L7M4_9ASTE)

HSP 1 Score: 91.7 bits (226), Expect = 2.840e-19
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  144 GDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETL-EVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLPVC 440
            G +I L  QP NSPD+N+  LGFF +IQ LKE     +  + VEA   A+     ETL +VW S   V+ +V+  +G N+YKLPH++K++ AR G LPVC
Sbjct:  178 GFNITLSNQPPNSPDLNILDLGFFRAIQSLKEKCAPKNVAELVEAVRGAYAALTAETLNKVWLSYQDVMQQVMNDEGGNKYKLPHMAKDRLARQGALPVC 277
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A484KHV7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KHV7_9ASTE)

HSP 1 Score: 89.0 bits (219), Expect = 4.750e-18
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  144 GDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETL-EVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLPVC 440
            G  I L  QP NSPD+NV  LGFF +IQ LK+   +S+  + +EA   A+     +TL +VW S   VL +V+ ++G N YKLPH+ K++ ARAG LP C
Sbjct:  232 GFHITLHNQPPNSPDLNVLDLGFFRAIQSLKDQCALSTVVELLEAVEGAYDALSPQTLNKVWLSYQQVLTKVMENEGGNNYKLPHMGKDRLARAGNLPSC 331
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A484MU55_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MU55_9ASTE)

HSP 1 Score: 89.4 bits (220), Expect = 6.090e-18
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:  120 MVAIQAKAGDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETL-EVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLPV 437
             +A  +  G +IIL  QP NSPD+N+  LGFF +IQ LKE     +  + VEA   A+     +TL +VW S   V+ EV+ + G N+YKLPH++K++ AR G LPV
Sbjct:  345 FMAAASGNGFNIILTNQPPNSPDLNILDLGFFRAIQSLKEKTAPKNVAELVEAVKGAYATLTPQTLNKVWLSYQHVMQEVMNNDGGNKYKLPHMAKDRLAREGTLPV 451
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A484K9V1_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484K9V1_9ASTE)

HSP 1 Score: 87.8 bits (216), Expect = 1.600e-17
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  144 GDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETL-EVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLPVC 440
            G +I L  QP NSPD+N+  LGFF +IQ LK+     +  + +EA   A+     ETL +VW S   V+ EV+  +G N+YKLPH++K++  R G LPVC
Sbjct:  263 GFNITLSNQPPNSPDLNILDLGFFRAIQSLKDQCTPKNVTELLEAVRGAYECLTPETLNKVWLSYQNVMQEVMNDEGGNKYKLPHMAKDRLTRQGALPVC 362
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A484LCT6_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LCT6_9ASTE)

HSP 1 Score: 85.5 bits (210), Expect = 1.210e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 3 
Query:  120 MVAIQAKAGDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETL-EVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLPVC 440
             VA     G  I L  QP NSPD+NV  LGFF +IQ LKE    +S    +EA   A+     ETL +VW +   VL +V+ ++G N Y+LPH+ K++ ARAG LP C
Sbjct:  279 FVAAGNSNGFHISLGNQPPNSPDLNVLDLGFFRAIQSLKEKCDPTSVGQLLEAVEGAYNALTPETLNKVWLTYQQVLTKVMENEGGNNYRLPHMGKDRMARAGTLPNC 386
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A484N929_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N929_9ASTE)

HSP 1 Score: 84.7 bits (208), Expect = 1.700e-16
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 3 
Query:  120 MVAIQAKAGDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETL-EVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLP 434
             VA     G  I L  QP NSPD+NV  LGFF +IQ LK+    S+  D ++A   A+     ETL +VW S   VL +++  +G N YKLPH+ K++ ARAG LP
Sbjct:  224 FVAAGNSNGFQITLCNQPPNSPDLNVLDLGFFRAIQSLKDQCAPSTVADLLDAVEGAYNALSPETLNKVWLSYQQVLTKIMEHEGGNNYKLPHMGKDRLARAGTLP 329
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: UPI0007EF40B3 (uncharacterized protein LOC108194535 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF40B3)

HSP 1 Score: 83.6 bits (205), Expect = 6.330e-16
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 3 
Query:  120 MVAIQAKAGDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETLE-VWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLPV 437
             + +    G +I L  QPANSPD+N+N LGFF  IQ L+ +   ++  + V A  EA+      TL  VW SL   + E+L   G+N YKLPH+ K K  R G+LP 
Sbjct:  326 FIEVAKSDGFNITLANQPANSPDLNINDLGFFRVIQGLQHEKAPTTVCELVGAVLEAYEEVSDSTLNHVWLSLMGCMTEILRKDGNNNYKLPHIGKGKLERLGQLPT 432
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A4Q9LR50_9MICR (Uncharacterized protein (Fragment) n=3 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LR50_9MICR)

HSP 1 Score: 76.6 bits (187), Expect = 3.040e-15
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:  150 SIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETLE-VWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLP---VCTRPS 452
            +I  + QPANSPD+NV YLGFF SIQ L+ +    +  + +    +AF+     TL+ V+ +L A +  ++ + G N YK+PH+SK K  R G+L    VC++ S
Sbjct:    4 NIKFKAQPANSPDLNVLYLGFFSSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACMESIMLADGGNGYKIPHISKGKLRREGRLLEKYVCSKES 108
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BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Match: A0A4Q9LQS0_9MICR (Uncharacterized protein (Fragment) n=2 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LQS0_9MICR)

HSP 1 Score: 74.3 bits (181), Expect = 2.280e-14
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:  150 SIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDAVEATTEAFYVYPRETLE-VWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFARAGKLP---VCTRPS 452
            +I  + QPANSPD+NV  LGFF+SIQ L+ +    +  + +    +AF+     TL+ V+ +L A +  ++ + G N YK+PHLSK K  R G+L    VC++ S
Sbjct:    2 NIKFKAQPANSPDLNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACMESIMLADGGNGYKIPHLSKGKLRREGRLLEKYVCSKES 106
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10314.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A484KNC4_9ASTE1.450e-1946.00Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484L7M4_9ASTE2.840e-1946.00Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484KHV7_9ASTE4.750e-1846.00Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484MU55_9ASTE6.090e-1843.93Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
A0A484K9V1_9ASTE1.600e-1744.00Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484LCT6_9ASTE1.210e-1644.44Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
A0A484N929_9ASTE1.700e-1644.34Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI0007EF40B36.330e-1641.12uncharacterized protein LOC108194535 n=1 Tax=Daucu... [more]
A0A4Q9LR50_9MICR3.040e-1539.05Uncharacterized protein (Fragment) n=3 Tax=Hamilto... [more]
A0A4Q9LQS0_9MICR2.280e-1439.05Uncharacterized protein (Fragment) n=2 Tax=Hamilto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10314contigD-mesarthrocarpus_Contig10314:3934..4388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog161934.XP_010696038.1
PFAMsHTH_Tnp_Tc3_2
Model size455
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.45e-17
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.1469092-CDS-D-mesarthrocarpus_Contig10314:3933..42691680789172.1469092-CDS-D-mesarthrocarpus_Contig10314:3933..4269Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10314 3934..4269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.1577182-UTR-D-mesarthrocarpus_Contig10314:4269..43881680789172.1577182-UTR-D-mesarthrocarpus_Contig10314:4269..4388Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10314 4270..4388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10314.2.1prot_D-mesarthrocarpus_Contig10314.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10314 3934..4269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10314.2.1

>prot_D-mesarthrocarpus_Contig10314.2.1 ID=prot_D-mesarthrocarpus_Contig10314.2.1|Name=mRNA_D-mesarthrocarpus_Contig10314.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=112bp
MVAIQAKAGDSIILETQPANSPDVNVNYLGFFHSIQQLKEDVGVSSPKDA
VEATTEAFYVYPRETLEVWQSLFAVLGEVLGSKGDNRYKLPHLSKEKFAR
AGKLPVCTRPS*
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mRNA from alignment at D-mesarthrocarpus_Contig10314:3934..4388-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10314.2.1 ID=mRNA_D-mesarthrocarpus_Contig10314.2.1|Name=mRNA_D-mesarthrocarpus_Contig10314.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=455bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10314:3934..4388- (Discosporangium mesarthrocarpum MT17_79)
AAGGAACTCATGATCGATAAGGTCATCCCCGCAATCAAGGCGAGAATGCC
TAGACCACCAGGTCACACGATCTTCGTGCAGCAGGATGGCGCAACGCCGC
ACAAGGGGGGGGGGGGGGCATGGTGGCAATTCAGGCAAAGGCGGGGGACA
GCATCATCCTGGAAACCCAGCCTGCCAACTCACCTGATGTCAACGTGAAC
TATCTTGGATTCTTCCACTCCATCCAGCAGCTGAAGGAGGATGTGGGAGT
TTCTTCTCCTAAGGATGCGGTGGAGGCCACAACAGAGGCCTTCTATGTCT
ACCCCCGGGAAACACTAGAAGTCTGGCAGAGCCTGTTCGCAGTCCTTGGG
GAAGTCCTTGGCTCTAAGGGTGATAATAGGTACAAGTTGCCCCATTTGAG
CAAGGAGAAGTTCGCTAGGGCAGGCAAACTTCCGGTCTGTACAAGGCCCT
CATGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10314:3934..4388-

>mRNA_D-mesarthrocarpus_Contig10314.2.1 ID=mRNA_D-mesarthrocarpus_Contig10314.2.1|Name=mRNA_D-mesarthrocarpus_Contig10314.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=336bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10314:3934..4388- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGGCAATTCAGGCAAAGGCGGGGGACAGCATCATCCTGGAAACCCA
GCCTGCCAACTCACCTGATGTCAACGTGAACTATCTTGGATTCTTCCACT
CCATCCAGCAGCTGAAGGAGGATGTGGGAGTTTCTTCTCCTAAGGATGCG
GTGGAGGCCACAACAGAGGCCTTCTATGTCTACCCCCGGGAAACACTAGA
AGTCTGGCAGAGCCTGTTCGCAGTCCTTGGGGAAGTCCTTGGCTCTAAGG
GTGATAATAGGTACAAGTTGCCCCATTTGAGCAAGGAGAAGTTCGCTAGG
GCAGGCAAACTTCCGGTCTGTACAAGGCCCTCATGA
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