mRNA_D-mesarthrocarpus_Contig10313.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10313.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10313.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10313contigD-mesarthrocarpus_Contig10313:1179..4092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1777
Hectar predicted targeting categoryother localisation
Exons2
Cds size1749
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.0116131-CDS-D-mesarthrocarpus_Contig10313:1178..27881680789172.0116131-CDS-D-mesarthrocarpus_Contig10313:1178..2788Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10313 1179..2788 -
1680789172.0264106-CDS-D-mesarthrocarpus_Contig10313:3925..40641680789172.0264106-CDS-D-mesarthrocarpus_Contig10313:3925..4064Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10313 3926..4064 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.0402591-UTR-D-mesarthrocarpus_Contig10313:4064..40921680789172.0402591-UTR-D-mesarthrocarpus_Contig10313:4064..4092Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10313 4065..4092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10313.1.1prot_D-mesarthrocarpus_Contig10313.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10313 1179..4064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10313.1.1

>prot_D-mesarthrocarpus_Contig10313.1.1 ID=prot_D-mesarthrocarpus_Contig10313.1.1|Name=mRNA_D-mesarthrocarpus_Contig10313.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=583bp
MGRPPPLEQGMDSKLKDVALDIGSARGNPFVMVEQQQQQLAREDVGGPSR
ATNFNPFGSCSSSMAVPPPHPRENASAHRRSSSLSTLGTSSPFGHAPPTL
VRTPSQDLGDLLSRRPLTTSAPLPPVGGGVVLEGKKFLKGPPALPPKLPR
DPFANFVQPTPSSTSMAPADGGGLWENRRETASPGGQGLLGGSGSGREEA
GAEAGERARGGDGSSLGEVDPMSALVPFSPPGAAPSGPAPPPTVQVPFGE
DPFASLPGTSGGGSLAPCPKMDSSLLPVSSLERALVPFGVPPSDGVPVAA
SHDPFTNIDLFGSGSGSPTSPGPPPPQPLPPADPFGATPATPAVPTPACG
LVGVRARGGGVVGTGGGLAGMAPTGSQAMTGGGDGRGSVAAAGARLGVVG
VAVSQPPPSDMFQGSSPVPVLQAMRPSPPPMLGSSPLSPFSVSPVSQLPA
QSGHQEHQQSHPGLRTTPLSPMKGFAPSAGMGATLARSPFKMGPGAGTGM
TVAGTGMTVRQQGADPFAAVDGGGERIFGQGAGTSAGVGTGSGNPFASSP
SMESYNPFDDANVKAVVPSLGLTQQRGIAGGAL
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10313:1179..4092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10313.1.1 ID=mRNA_D-mesarthrocarpus_Contig10313.1.1|Name=mRNA_D-mesarthrocarpus_Contig10313.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2914bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10313:1179..4092- (Discosporangium mesarthrocarpum MT17_79)
AGACCTTCAGGGGCTCGTATTTGAGCAGATGGGGCGACCACCGCCCCTGG
AGCAAGGCATGGACTCTAAGCTGAAGGATGTGGCCTTGGATATTGGGTCC
GCCAGAGGAAACCCATTTGTCATGGTTGAGCAACAACAACAGCAGCTGGC
CAGGGAAGACGTGGGAGGTGTGTGCCTGTTCTTGCAAGGAGGAGAGGGGA
ACCAGGGGAGGGTGTTGGGGGGGGGGGGGGCAATCCAAGGGGGAATGGAG
GATAGGCGCGACTTGGGTTACTTTTGAAGCACCCTTGCTGACTTGCTTCC
CCTTGGTATGATCGTATGATTGTGATACTTATGCCTTGGCGAAAGGCAAT
TCATAATCATGCTACCCCCCCATCCCCCTGGTGCTATTTATGCATCTAGA
CTACAGTAATGCATTGATATCTAGTTAGGGTTAGGGTTAGGGTTAGGGTC
AGGTTGAGCTACTAAGGAGGGACGTGTTTCTCTTGGCCCCATGTGACTTT
TGGAGGGCGTGTCAGCTCTACAGCTAGTGGCGGCAAGAATGAGGGGTTTC
TTCAGTGCTCCAGCCGCTTTTTAAGAAATGGTACACCCCCTCCTCCCTGG
TTTGTCCGTCCTCCCGACCAATAATTGACTTGTGTGGTACAACGCAGCAC
AGGACAGTAGTGTATTTCAAAAAAACACCCCTACAACACAGCTGCAAAGG
TGCAGTCACCATAGGCCCTGATGTTCTAAAGGAGTGGTTCATCACCGGGG
GCTGAGGGTGCGGAGAGAAGAAAAGGTCCCCAATGCATGTCCCGGAATCA
ATACCCCAAGGCAAAAAAACGGATCTTCTGTTGCACCCACTCCCAGGGGT
GGAAGGAGTTCCGTTGTCCCTGCCTTTTAATCAAGCCCCTGAGTGATGCC
ATCACTGGTTTTGCTCTCGTGTTCCGCCTCACACCAGTGTGTGCAGAGCT
GAGCTTTAACATGCCCGCACCCCCCCTGCAATGTTGGGCATGTCACGATG
CTGCTTGGAAGAAACGATGTTTTGTGGGATTGCTCTTTCCATTTTTCATG
GCCCTGCACCGCATGTGATGAGCAGTGGAGCATGCAAGCTACTGAGCCGC
TTCTCTGTGACACCTAGAGCACTGCTTGCCGCCCCCCTTTTGAGCCCCCT
CCCTCACCGGAAGCCCCTTCTCGCTTGCCAAGGGGTTGGCTCACACCTGC
CATGTCAACCCCCCTGCAGGCTGACGGACCTATCCCCTACCCCCCCCCAA
GACCTGCTTAACCTTCCCACTCCCTCCTTCAACATTCATGGCCTTCCCCA
GCAGGGCCTTCTCGGGCGACCAACTTCAACCCCTTTGGCAGCTGCTCGAG
CAGTATGGCGGTGCCACCTCCCCACCCTCGTGAAAACGCCAGTGCCCACC
GCCGCTCGAGCAGCCTGTCCACCCTGGGGACTTCTTCGCCCTTCGGCCAT
GCCCCCCCTACCCTGGTGAGGACGCCCTCCCAAGACTTAGGGGACCTCCT
CTCCCGGCGCCCGTTGACCACCTCGGCGCCACTGCCGCCAGTCGGTGGGG
GGGTGGTCCTTGAAGGAAAAAAATTCCTGAAGGGGCCGCCGGCCCTCCCG
CCCAAGCTCCCCAGGGACCCATTTGCCAACTTTGTGCAACCCACCCCCTC
CTCCACAAGCATGGCCCCCGCTGATGGCGGAGGATTGTGGGAGAATAGGA
GGGAGACGGCTTCACCGGGGGGGCAGGGACTGCTGGGGGGAAGCGGGAGT
GGGAGGGAAGAGGCTGGGGCTGAGGCCGGGGAGCGAGCAAGGGGTGGTGA
TGGCAGCAGTCTGGGGGAGGTCGACCCTATGAGTGCGCTGGTGCCCTTCT
CCCCACCGGGTGCTGCCCCCTCTGGCCCTGCTCCCCCCCCCACAGTACAA
GTCCCCTTTGGTGAGGATCCGTTTGCCTCTCTTCCAGGCACCTCTGGTGG
TGGGTCCCTTGCCCCCTGCCCTAAGATGGACTCGTCGCTACTCCCAGTGT
CATCTCTGGAGAGAGCGCTGGTTCCATTTGGTGTGCCCCCGAGCGACGGG
GTTCCCGTGGCAGCCAGCCATGACCCCTTCACCAACATCGATTTGTTTGG
GAGCGGCTCCGGGTCGCCCACAAGTCCGGGCCCACCTCCACCGCAGCCAC
TGCCCCCCGCAGATCCCTTCGGAGCCACGCCTGCCACACCGGCTGTTCCC
ACCCCTGCTTGTGGCCTGGTGGGTGTGCGGGCCCGGGGGGGGGGGGTGGT
AGGCACAGGAGGAGGGCTGGCGGGCATGGCCCCGACAGGGTCCCAGGCTA
TGACGGGGGGTGGTGATGGCAGGGGCAGCGTCGCAGCAGCAGGCGCAAGG
CTAGGGGTGGTGGGTGTTGCCGTGTCCCAACCGCCGCCTTCTGATATGTT
CCAGGGGTCGTCTCCTGTGCCCGTGTTGCAGGCGATGCGTCCCTCACCGC
CGCCAATGCTTGGATCCTCGCCGCTTTCTCCGTTCAGTGTGTCGCCTGTG
TCTCAGCTGCCAGCACAATCAGGGCACCAGGAGCACCAGCAGAGTCACCC
AGGCCTGCGTACTACCCCCCTCAGCCCAATGAAGGGGTTTGCCCCCTCTG
CCGGCATGGGTGCCACCCTGGCCCGGAGCCCTTTCAAGATGGGCCCAGGG
GCTGGCACTGGAATGACCGTGGCTGGCACTGGAATGACCGTGCGGCAGCA
GGGGGCCGACCCATTTGCAGCTGTTGATGGGGGAGGAGAGAGGATCTTTG
GCCAGGGGGCTGGGACTAGTGCTGGGGTAGGGACAGGTTCTGGGAATCCG
TTTGCCAGCAGCCCTTCCATGGAGAGCTACAACCCATTTGATGACGCCAA
TGTAAAGGCTGTTGTTCCATCACTTGGATTAACACAACAGAGAGGAATAG
CAGGTGGTGCCTTA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10313:1179..4092-

>mRNA_D-mesarthrocarpus_Contig10313.1.1 ID=mRNA_D-mesarthrocarpus_Contig10313.1.1|Name=mRNA_D-mesarthrocarpus_Contig10313.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1749bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10313:1179..4092- (Discosporangium mesarthrocarpum MT17_79)
ATGGGGCGACCACCGCCCCTGGAGCAAGGCATGGACTCTAAGCTGAAGGA
TGTGGCCTTGGATATTGGGTCCGCCAGAGGAAACCCATTTGTCATGGTTG
AGCAACAACAACAGCAGCTGGCCAGGGAAGACGTGGGAGGGCCTTCTCGG
GCGACCAACTTCAACCCCTTTGGCAGCTGCTCGAGCAGTATGGCGGTGCC
ACCTCCCCACCCTCGTGAAAACGCCAGTGCCCACCGCCGCTCGAGCAGCC
TGTCCACCCTGGGGACTTCTTCGCCCTTCGGCCATGCCCCCCCTACCCTG
GTGAGGACGCCCTCCCAAGACTTAGGGGACCTCCTCTCCCGGCGCCCGTT
GACCACCTCGGCGCCACTGCCGCCAGTCGGTGGGGGGGTGGTCCTTGAAG
GAAAAAAATTCCTGAAGGGGCCGCCGGCCCTCCCGCCCAAGCTCCCCAGG
GACCCATTTGCCAACTTTGTGCAACCCACCCCCTCCTCCACAAGCATGGC
CCCCGCTGATGGCGGAGGATTGTGGGAGAATAGGAGGGAGACGGCTTCAC
CGGGGGGGCAGGGACTGCTGGGGGGAAGCGGGAGTGGGAGGGAAGAGGCT
GGGGCTGAGGCCGGGGAGCGAGCAAGGGGTGGTGATGGCAGCAGTCTGGG
GGAGGTCGACCCTATGAGTGCGCTGGTGCCCTTCTCCCCACCGGGTGCTG
CCCCCTCTGGCCCTGCTCCCCCCCCCACAGTACAAGTCCCCTTTGGTGAG
GATCCGTTTGCCTCTCTTCCAGGCACCTCTGGTGGTGGGTCCCTTGCCCC
CTGCCCTAAGATGGACTCGTCGCTACTCCCAGTGTCATCTCTGGAGAGAG
CGCTGGTTCCATTTGGTGTGCCCCCGAGCGACGGGGTTCCCGTGGCAGCC
AGCCATGACCCCTTCACCAACATCGATTTGTTTGGGAGCGGCTCCGGGTC
GCCCACAAGTCCGGGCCCACCTCCACCGCAGCCACTGCCCCCCGCAGATC
CCTTCGGAGCCACGCCTGCCACACCGGCTGTTCCCACCCCTGCTTGTGGC
CTGGTGGGTGTGCGGGCCCGGGGGGGGGGGGTGGTAGGCACAGGAGGAGG
GCTGGCGGGCATGGCCCCGACAGGGTCCCAGGCTATGACGGGGGGTGGTG
ATGGCAGGGGCAGCGTCGCAGCAGCAGGCGCAAGGCTAGGGGTGGTGGGT
GTTGCCGTGTCCCAACCGCCGCCTTCTGATATGTTCCAGGGGTCGTCTCC
TGTGCCCGTGTTGCAGGCGATGCGTCCCTCACCGCCGCCAATGCTTGGAT
CCTCGCCGCTTTCTCCGTTCAGTGTGTCGCCTGTGTCTCAGCTGCCAGCA
CAATCAGGGCACCAGGAGCACCAGCAGAGTCACCCAGGCCTGCGTACTAC
CCCCCTCAGCCCAATGAAGGGGTTTGCCCCCTCTGCCGGCATGGGTGCCA
CCCTGGCCCGGAGCCCTTTCAAGATGGGCCCAGGGGCTGGCACTGGAATG
ACCGTGGCTGGCACTGGAATGACCGTGCGGCAGCAGGGGGCCGACCCATT
TGCAGCTGTTGATGGGGGAGGAGAGAGGATCTTTGGCCAGGGGGCTGGGA
CTAGTGCTGGGGTAGGGACAGGTTCTGGGAATCCGTTTGCCAGCAGCCCT
TCCATGGAGAGCTACAACCCATTTGATGACGCCAATGTAAAGGCTGTTGT
TCCATCACTTGGATTAACACAACAGAGAGGAATAGCAGGTGGTGCCTTA
back to top