mRNA_D-mesarthrocarpus_Contig10303.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10303.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10303.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 3.840e-43
Identity = 97/125 (77.60%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQRTG-MPPRGMPMA--GQGMYPIPYWMGGQPGMPQQPR--MMPQMMARGPRGPMPAFGGRGNYPMPAYATQPRRAAAGPRQQR-GQPQPQGGRGGPQQ 360
            ML NKPIYVALAQRREVRRTQLEAQFAQRTG MPPRGMPMA   QGMY +PYWMG QPGMPQQPR  MMPQMM RGPRGPMPA+GGRGNYPMPAYAT       G +QQ  GQPQP+ G G  QQ
Sbjct:  406 MLLNKPIYVALAQRREVRRTQLEAQFAQRTGGMPPRGMPMAPGAQGMYGMPYWMGAQPGMPQQPRQFMMPQMMPRGPRGPMPAYGGRGNYPMPAYAT------PGQQQQMPGQPQPRRGAGPRQQ 524
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.690e-16
Identity = 65/108 (60.19%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQ-RTGMPPRGMPMAGQ-GMYPI--PYWMGGQPG-MPQQPR-----MMPQMMARGPRGP-------MPAFGGRGNYPMPAYA 276
            M+++KPIYVALAQR+EVRR QLEAQ+AQ R G+ PRG   A Q GMY +  PY M GQPG MPQ PR     MMPQMM  GPRG        M  + GRG YPMPAYA
Sbjct:  415 MVASKPIYVALAQRKEVRRAQLEAQYAQQRGGLGPRGPMGAMQPGMYGMGMPYMMPGQPGGMPQPPRAGGYPMMPQMM--GPRGAPRGGPNSMQPYPGRGTYPMPAYA 520
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: A0A448ZJB9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJB9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.660e-10
Identity = 60/135 (44.44%), Postives = 66/135 (48.89%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQRTGMPPRGM------PMAGQGMYP-IPYWMGGQPG-----MPQQPRMMPQMMARGPRGPMPAF--------GGRGNYPMPAYATQPRRAAAGPRQQRGQPQPQGGRG 348
            ++ NKPI+VALAQRREVRR QLEAQ A R   PP G       PM G   YP +P    G+ G      P  P  MPQMM  G RG             GGRG YPMP     P      P Q    P P+GGRG
Sbjct:  436 LIVNKPIFVALAQRREVRRAQLEAQHASRGPPPPAGQAGMMRGPMGGPIGYPGMPAMYMGRTGPGGGMQPAYPMAMPQMMGPGGRGGQXXXXXXXXGQPGGRGAYPMPYGGVMPGXXXXXPMQPG--PNPRGGRG 568
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: A0A1Z5JE42_FISSO (Polyadenylate-binding protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JE42_FISSO)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-9
Identity = 53/108 (49.07%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQRTGMP--------PRGMPMAGQGMYPIPYWMGGQPGMPQQPR--MMPQMMARGPRGPM--------PAFG--GRGNYPMP 267
            +++NKPI+VALAQRREVRR QLEAQ A R G P        P G PM   GM P+ Y     PG   QP   MMPQM+A G   P         P  G  GRG YPMP
Sbjct:  418 LIANKPIFVALAQRREVRRAQLEAQHANRVGGPGQPGMMRGPMGGPMGYPGMAPM-YMQRPGPGGAMQPAYPMMPQMIAGGRGAPQQQQRAGVYPMLGQQGRGGYPMP 524
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: D0RMB6_PHYIT (Polyadenylate-binding protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMB6_PHYIT)

HSP 1 Score: 63.9 bits (154), Expect = 3.060e-9
Identity = 57/103 (55.34%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQ-RTGMPP-RGMPMAGQGMYPIPYWMGGQPG-MPQQPR---MMPQ-MMARG-PRGPMPAFGGR-------GNYPMP 267
            ++S KP+YVALAQR+EVRR QLEAQ AQ R GM   RGMPM    MY       GQPG +P Q R   M PQ MM RG  RGPMP +G R       G YPMP
Sbjct:  342 LISGKPVYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYGAAPMFYGQPGQLPPQARQGFMYPQQMMPRGVQRGPMP-YGARVPGAPAPGGYPMP 443
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: A0A1X2IQX1_9FUNG (Polyadenylate-binding protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IQX1_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 1.450e-8
Identity = 58/130 (44.62%), Postives = 70/130 (53.85%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQRTGMP-PRGMPMAGQGMYPIPYWMGGQP----------------GMPQQPRMMPQMMARGPRGPMPAFGG-RGNYPMPAYATQPRRAAAG--PRQQRGQPQP 333
            M+ +KPIYVALAQR+EVRR+QL+AQ  QR  M   + +PMAG    P   +MGG P                GM  +PR  PQ        PMP FGG +GNYPM     QPR    G  P  Q+G+PQP
Sbjct:  394 MVGSKPIYVALAQRKEVRRSQLDAQMNQRNQMQMQQNVPMAGGPGAPGGPYMGGAPMYYAPMNSFRPVYPPGGMMPRPRWAPQHGQ-----PMPGFGGPQGNYPM-----QPRPVHGGGPPVPQQGRPQP 513
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: A0A7S2WDZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WDZ5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.500e-8
Identity = 56/122 (45.90%), Postives = 62/122 (50.82%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQRTGMPPRGMPMAGQGMYP---IPYWMGGQ-PGMPQQPR--MMPQMMARGPRG-----PMPAFGG-----------RGNYPMPAYATQPRRAAAG 303
            +L+NKPIYVALAQRREVRR QLEAQ  QR  M   G PM    MY    +P +M    PG   QP   +MP MM    RG     P    GG           RG YPMPAY   P+ A  G
Sbjct:   31 LLANKPIYVALAQRREVRRAQLEAQHNQRAAM---GQPMMRGMMYSGGAMPMYMPRPGPGGAMQPAYPIMPNMMGGPGRGXXXXQPRQGSGGYPXXXXXXXXXRGAYPMPAYGVVPQGARGG 149
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: A0A7S2RUB9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RUB9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.860e-8
Identity = 56/122 (45.90%), Postives = 62/122 (50.82%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQRTGMPPRGMPMAGQGMYP---IPYWMGGQ-PGMPQQPR--MMPQMMARGPRG-----PMPAFGG-----------RGNYPMPAYATQPRRAAAG 303
            +L+NKPIYVALAQRREVRR QLEAQ  QR  M   G PM    MY    +P +M    PG   QP   +MP MM    RG     P    GG           RG YPMPAY   P+ A  G
Sbjct:   31 LLANKPIYVALAQRREVRRAQLEAQHNQRAAM---GQPMMRGMMYSGGAMPMYMPRPGPGGAMQPAYPIMPNMMGGPGRGXXXXQPRQGSGGYPXXXXXXXXXRGAYPMPAYGVVPQGARGG 149
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: W4FQT6_9STRA (Polyadenylate-binding protein n=8 Tax=Aphanomyces TaxID=100860 RepID=W4FQT6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.730e-7
Identity = 48/108 (44.44%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQRTGMPPRGMPMAGQGMYPIPYWMGGQPGMPQQPRMMP-----------QMMARG--PRGPMP-----AFGGRGNYPMPAY 273
            +L+ KPIYVALAQR+EVRR QLEAQ AQ+  +  RG+P+  Q     P   G  P    QP  +P           QM+ RG  PRGP+P       GG G Y MP Y
Sbjct:  385 LLNGKPIYVALAQRKEVRRAQLEAQHAQQRMVAGRGLPLQHQ-----PPMYGAAPMFYAQPNQLPPQARQGFVYPQQMIPRGGIPRGPIPYRQPGVPGGPGGYGMPQY 487
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BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Match: A0A6A3LR95_9STRA (Polyadenylate-binding protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LR95_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.740e-7
Identity = 50/85 (58.82%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    4 MLSNKPIYVALAQRREVRRTQLEAQFAQ-RTGMPP-RGMPMAGQGMYPIPYWMGGQPG-MPQQPR---MMPQ-MMARG-PRGPMP 234
            ++S KP+YVALAQR+EVRR QLEAQ AQ R GM   RGMPM    MY       GQPG MP Q R   M PQ MM RG  RGP+P
Sbjct:  429 LISGKPVYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYGAAPMFYGQPGQMPPQARQGFMYPQQMMPRGVQRGPIP 513
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10303.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI3.840e-4377.60Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A835YVH9_9STRA1.690e-1660.19Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A448ZJB9_9STRA6.660e-1044.44Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5JE42_FISSO1.680e-949.07Polyadenylate-binding protein n=2 Tax=Fistulifera ... [more]
D0RMB6_PHYIT3.060e-955.34Polyadenylate-binding protein n=1 Tax=Phytophthora... [more]
A0A1X2IQX1_9FUNG1.450e-844.62Polyadenylate-binding protein n=1 Tax=Absidia repe... [more]
A0A7S2WDZ5_9STRA5.500e-845.90Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2RUB9_9STRA9.860e-845.90Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
W4FQT6_9STRA1.730e-744.44Polyadenylate-binding protein n=8 Tax=Aphanomyces ... [more]
A0A6A3LR95_9STRA1.740e-758.82Polyadenylate-binding protein n=5 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10303contigD-mesarthrocarpus_Contig10303:113..1184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTD5
Preferred namePAB1
PFAMsPABP,RRM_1
Model size402
Max annot lvl2759|Eukaryota
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
Exons3
Evalue4.39e-44
EggNOG OGsKOG0123@1|root,KOG0123@2759|Eukaryota
DescriptionRNA binding
Cds size399
COG categoryJ
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.0591402-UTR-D-mesarthrocarpus_Contig10303:112..1151680789171.0591402-UTR-D-mesarthrocarpus_Contig10303:112..115Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10303 113..115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.073973-CDS-D-mesarthrocarpus_Contig10303:115..3001680789171.073973-CDS-D-mesarthrocarpus_Contig10303:115..300Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10303 116..300 +
1680789171.0837412-CDS-D-mesarthrocarpus_Contig10303:607..6981680789171.0837412-CDS-D-mesarthrocarpus_Contig10303:607..698Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10303 608..698 +
1680789171.09634-CDS-D-mesarthrocarpus_Contig10303:1061..11841680789171.09634-CDS-D-mesarthrocarpus_Contig10303:1061..1184Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10303 1062..1184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10303.1.1prot_D-mesarthrocarpus_Contig10303.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10303 116..1184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10303.1.1

>prot_D-mesarthrocarpus_Contig10303.1.1 ID=prot_D-mesarthrocarpus_Contig10303.1.1|Name=mRNA_D-mesarthrocarpus_Contig10303.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=133bp
MLSNKPIYVALAQRREVRRTQLEAQFAQRTGMPPRGMPMAGQGMYPIPYW
MGGQPGMPQQPRMMPQMMARGPRGPMPAFGGRGNYPMPAYATQPRRAAAG
PRQQRGQPQPQGGRGGPQQRGQPQQRGQPQQQQ
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mRNA from alignment at D-mesarthrocarpus_Contig10303:113..1184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10303.1.1 ID=mRNA_D-mesarthrocarpus_Contig10303.1.1|Name=mRNA_D-mesarthrocarpus_Contig10303.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1072bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10303:113..1184+ (Discosporangium mesarthrocarpum MT17_79)
CAGATGCTTTCCAACAAGCCCATCTATGTGGCCTTGGCCCAGAGGCGCGA
AGTTCGCAGGACACAGTTGGAGGCTCAGTTTGCTCAGAGGACAGGAATGC
CCCCTCGTGGGATGCCCATGGCAGGGCAGGGCATGTACCCCATCCCCTAC
TGGATGGGAGGCCAACCGGGCATGCCGCAGCAGCCCCGGTGAGCCTTTTG
CCCCCCTTCTCCCTCCTAATGCTTTTTTTTCCTACAAAAAAACAATAAGA
AGAGAATCCACCCTTTGATTTGAGCCCCATCCTTGGAGTGATCCTTCTTC
TTTAGTCACACAGATTTCCTTACTAGGCCCCTCAAGCTGCCCTAACACCC
ATACCTCCTCCCCTCTTAAGAAACAGAATAGATTGGGGGGGGTATCCCCT
CATAGAGGTATCTGCTGTTTTGTGACACATGAATTCATGTTCCCTAACAA
ACCCCTCTTTTGCTTTATCGGTCCCTGTCCCTGCAGGCAGTACAGCATGA
TGCCCCAGATGATGGCCCGGGGTCCACGAGGACCCATGCCTGCCTTTGGC
GGGAGGGGAAACTACCCTATGCCTGCCTATGCAACCGTAGGTCAGGTGAG
AAAATCCTTTCATCATGTGTCCCTTTCTCCTTAGGATTTGGTTCCATGTG
CTTGCTCAAGAGTGTAGGCGGTCTCTCCCTGGGCACAGGGCTGGAAGCTG
CGGGGCTGGGCTTGGTTGTAGCGGAAGAACCTGTAGCTTTGCCAACCAAG
GAATATATTTTGCCCCATGCTGTATCTGTTCCTATATTTAGGCTCACGGC
AAGGTTATTGCGCTCGGAAGTCTGTTTCTTTGAGGGCTCAACAAATGGTA
GTGACCCCCACTGGGAACTGGGTAAGTTGGCCCTTTTTACGATTTTTTTG
CTTTTGATTCCTGATGATGTGCTCTGCACAGATGCCTGGCCAGCAACAGC
AACCTCGGAGGGCAGCTGCAGGGCCACGCCAGCAACGAGGTCAGCCTCAG
CCTCAGGGAGGGCGTGGGGGACCCCAGCAACGCGGACAGCCCCAGCAGCG
TGGGCAGCCACAGCAACAGCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10303:113..1184+

>mRNA_D-mesarthrocarpus_Contig10303.1.1 ID=mRNA_D-mesarthrocarpus_Contig10303.1.1|Name=mRNA_D-mesarthrocarpus_Contig10303.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=399bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10303:113..1184+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTTTCCAACAAGCCCATCTATGTGGCCTTGGCCCAGAGGCGCGAAGT
TCGCAGGACACAGTTGGAGGCTCAGTTTGCTCAGAGGACAGGAATGCCCC
CTCGTGGGATGCCCATGGCAGGGCAGGGCATGTACCCCATCCCCTACTGG
ATGGGAGGCCAACCGGGCATGCCGCAGCAGCCCCGCATGATGCCCCAGAT
GATGGCCCGGGGTCCACGAGGACCCATGCCTGCCTTTGGCGGGAGGGGAA
ACTACCCTATGCCTGCCTATGCAACCCAACCTCGGAGGGCAGCTGCAGGG
CCACGCCAGCAACGAGGTCAGCCTCAGCCTCAGGGAGGGCGTGGGGGACC
CCAGCAACGCGGACAGCCCCAGCAGCGTGGGCAGCCACAGCAACAGCAG
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