mRNA_D-mesarthrocarpus_Contig10300.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10300.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10300.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: W2QAD0_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QAD0_PHYPN)

HSP 1 Score: 125 bits (315), Expect = 6.210e-31
Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  207 ARLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPRISDG--V*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPT-TVNAERYKELMIEKVVPAIKAAIPRQ-PGHTIFVQQDGAKPYM 677
            AR+ F LSHT RK G  VV  DM+D V++D+K F    D +  YL+ +E+ P   R Q+KRFI+K +F+AAVARPR        FDGK+GIW  A+   A R   NR KGT++L+   +V+ E YK  +I  ++PAIKA  PR     TI++QQD AKP++
Sbjct:   44 ARVQFELSHTTRKRGGEVVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQR-QSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRNVESVDREAYKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHV 203          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: A0A6G0XA16_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XA16_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.390e-30
Identity = 66/159 (41.51%), Postives = 96/159 (60.38%), Query Frame = 3
Query:  207 ARLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPRISDGV*--FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGHTIFVQQDGAKPYM 677
            AR+ + L H   +GG     DDM D V++D+K F+M K     YL P+E+ P     ++K+ ITKV+F+AAVARPR  +     FDGK+G+WP    V A R   NR  GT+ L+   VN E YK++++ KV+PAIK   P +    + +QQD A+P++
Sbjct:  116 ARVKWALDHVRYRGGLN--FDDMMDVVHIDEKWFFMTKLKTNYYLAPDEEPPHRTE-RSKQHITKVMFMAAVARPRWDEATRTWFDGKIGVWPFVIEVPAARSSRNRPAGTLELQTIPVNKETYKDMLLSKVIPAIKEKWPLRSTRNVVIQQDNARPHV 271          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: A0A6A5AK20_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AK20_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.950e-30
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  240 RKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPRISDG--V*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGH-TIFVQQDGAKPY 674
            R    G + D+MY  V+VD+K F +    +  Y   +ED PK  R ++KR+ITKV+FLAAV RPR        FDGK+GIWP  +TV A R   NR KGT ++ P  V ++ Y+ ++ + V+PAIKA +PRQ  + TI++QQD A P+
Sbjct:   35 RPSSKGTIFDNMYSFVHVDEKWFNLTTVKKAFYAYEDEDLPKR-RLKSKRYITKVMFLAAVTRPRYDHHKKCIFDGKIGIWPFVETVLAQRLSRNRPKGTPIVVPQNVTSDVYRSMIFDNVIPAIKAKMPRQDQNKTIYLQQDNASPH 181          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: W4GWE0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWE0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.710e-30
Identity = 66/158 (41.77%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  210 RLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPR-ISDGV*-FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGHTIFVQQDGAKPYM 677
            R+ +V+ H H         DDM + V+VD+K F+  K  + +YL P E+ P     ++KR+ITKV+FL+AVARPR + D V  FDGK+G W   + V A R   NR  GT++ KP +V  + Y++++I+ V+PAIKA  PR     I +QQD A+P++
Sbjct:   88 RVQWVMKHLHALSSAQYAFDDMMNTVHVDEKWFFATKISKKMYLAPGEEPPHR-TCKSKRYITKVMFLSAVARPRWVDDEVGWFDGKIGTWHFTERVPAERSSRNRAAGTLVTKPVSVTQDIYRKMLIDNVIPAIKAKWPRNSSRCITIQQDNARPHV 244          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: A0A6A4YZW8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YZW8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.480e-30
Identity = 70/157 (44.59%), Postives = 91/157 (57.96%), Query Frame = 3
Query:  204 EARLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPRISDGV*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGHTIFVQQDGAKPY 674
            EAR  + +S  H   GT +  D M D V +D+K FY+ K     YL P ED P     +NKR+I  V+FL AVARPR+ DGV FDGK+GIWP  + VAA RR   R+ GT+  K  TV    YK++++++  PAI    PR     I VQ D A P+
Sbjct:  130 EARKRYAMSFAHAVNGT-ITFDSMMDRVFLDEKWFYLRKVRNKYYLAPWEDVPHQ-STKNKRYIPSVMFLTAVARPRMVDGVHFDGKLGIWPFVEVVAAQRRSNRREAGTLETKSVTVTKAIYKKMLVDQTFPAIFEKFPRNV-QRIVVQHDNATPH 283          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: A0A6A4Z7D1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z7D1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.510e-30
Identity = 67/157 (42.68%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  210 RLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPRIS-DGV*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGHT-IFVQQDGAKPY 674
            RL + +S          + DDM+D V++D+K FY+ K  R  Y+  E++A      ++KRFITKV+FLAA+ARPR+  +G  FDGK+G+WP  + + A R   NR KGT++  P +V+A+ Y E+++  VVPAIKA  PR    T + +QQD A P+
Sbjct:  163 RLRYAISFLQPLSNGNHIFDDMHDCVHIDEKWFYLTKVKRKFYVY-EDEAVAARFVKSKRFITKVMFLAAIARPRVDFNGNIFDGKIGVWPFVEKLPAKRNSKNRAKGTIVTTPQSVDAKVYLEMVLNNVVPAIKAKFPRSTLRTGVTIQQDNASPH 318          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 124 bits (310), Expect = 1.390e-29
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  207 ARLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPRISDG--V*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPT-TVNAERYKELMIEKVVPAIKAAIPRQ-PGHTIFVQQDGAKPYM 677
            AR+ F LSHT RK G  +V  DM+D V++D+K F    D +  YL+ +E+ P   R Q+KRFI+K +F+AAVARPR        FDGK+GIW  A+   A R   NR KGT++L+   +V+ E YK   I  ++PAIKA  PR     TI++QQD AKP++
Sbjct:  140 ARVQFALSHTTRKRGGEMVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQR-QSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRNVESVDREAYKATHIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHV 299          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: A0A6A5A6A6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6A6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.300e-29
Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = 3
Query:  261 VMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRA-QNKRFITKVIFLAAVARPRI--SDGV*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIP-RQPGHTIFVQQDGAKPY 674
            + D MY  V+VD+K F++    + +Y+  +E+     RA ++KRFITKV+FLAAVARPR   + G  F GK+G+WP  + V A R   NR KGT++L P  V AE Y+ ++++KVVPAI+A +P R  G  I++QQD A P+
Sbjct:   60 IFDSMYQTVHVDEKWFFLTTAKKRVYVYADEEVAL--RALKSKRFITKVMFLAAVARPRFDHNKGSMFSGKIGVWPFVEQVVAQRNSRNRPKGTVLLVPQAVTAEVYRTMILDKVVPAIQAKMPQRVQGSLIYLQQDNASPH 199          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.910e-29
Identity = 64/158 (40.51%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  210 RLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPRISD--GV*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGHTIFVQQDGAKPYM 677
            R+G+ +   H         DDM + V+VD+K F+  +  +  YL P E AP     ++KRFI+KV+FL+AVARPR++D  G  FDGK+G W   + VAA R   NR  GT+  +P +V    YK ++I+KV+P IK+  P   G  + +QQD A+P++
Sbjct:  154 RVGWAMGLIHASDHGEYTFDDMMEYVHVDEKWFFATRVSKRYYLAPGE-APPHRTCKSKRFISKVMFLSAVARPRLNDDTGEWFDGKIGTWHFTEKVAAARTSRNRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWPSSAGRNVIIQQDNARPHV 310          
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Match: W4GP40_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP40_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.520e-29
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 3
Query:  204 EARLGFVLSHTHRKGGTGVVMDDMYDGVNVDDK*FYMMKDGRGIYLNPEEDAPKPPRAQNKRFITKVIFLAAVARPR--ISDGV*FDGKVGIWPIADTVAAMRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGHTIFVQQDGAKPYM 677
            EA     L     + G  +++ DM D V+VD+K FYM +  + +YL P E+ P     ++KRFITKV+FL+AVARPR   +    FDG++G W    TV A R   NR  GTM+  P TV  + Y++++I+ V+PAIKA  P      I +QQD A+P++
Sbjct:   62 EANKAARLKWAFERLGPDLMVHDMMDYVHVDEKWFYMTRVKKTLYLLPGEEPPHR-STKSKRFITKVMFLSAVARPRWNYNTNEWFDGRIGTWHFTQTVPAQRSSRNRPSGTMVTVPCTVTRDTYRDMLIDNVIPAIKAKWPNDKAARILLQQDNARPHV 220          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W2QAD0_PHYPN6.210e-3146.58Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6G0XA16_9STRA1.390e-3041.51Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5AK20_9STRA1.950e-3044.59Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GWE0_9STRA3.710e-3041.77Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A4YZW8_9STRA4.480e-3044.59Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A4Z7D1_9STRA6.510e-3042.68Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W2NW41_PHYPR1.390e-2945.96HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
A0A6A5A6A6_9STRA4.300e-2945.77Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4YXI9_9STRA5.910e-2940.51Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GP40_9STRA6.520e-2941.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10300contigD-mesarthrocarpus_Contig10300:3726..4402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog161934.XP_010684026.1
PFAMsHTH_Tnp_Tc3_2
Model size677
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.44e-06
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.9281492-UTR-D-mesarthrocarpus_Contig10300:3725..42251680789170.9281492-UTR-D-mesarthrocarpus_Contig10300:3725..4225Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10300 3726..4225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.938799-CDS-D-mesarthrocarpus_Contig10300:4225..44021680789170.938799-CDS-D-mesarthrocarpus_Contig10300:4225..4402Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10300 4226..4402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10300.1.1prot_D-mesarthrocarpus_Contig10300.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10300 4226..4402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10300.1.1

>prot_D-mesarthrocarpus_Contig10300.1.1 ID=prot_D-mesarthrocarpus_Contig10300.1.1|Name=mRNA_D-mesarthrocarpus_Contig10300.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=59bp
MRRGMNRKKGTMMLKPTTVNAERYKELMIEKVVPAIKAAIPRQPGHTIFV
QQDGAKPYM
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mRNA from alignment at D-mesarthrocarpus_Contig10300:3726..4402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10300.1.1 ID=mRNA_D-mesarthrocarpus_Contig10300.1.1|Name=mRNA_D-mesarthrocarpus_Contig10300.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=677bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10300:3726..4402+ (Discosporangium mesarthrocarpum MT17_79)
GACATGTCCCGAGGGCGCCAGGGGCGTTGTGGTCACCCTAATGCGGTGAC CGACCCATCGGAGGTGCCTTCAATCAGCCGCACGTCGTACCGCAAATGGG CGGTCAAATCGGGGATCCCCCTCTCCTCGTTGTGGCGCCTGTGCAAGCGG GTGGGAGCGAGGAAGCACAAACGGTGGGTCAAGCCGGTGCTATCGGACAA GCAGAAGCGCGATTGGGTTTTGTGCTGAGCCACACGCACAGGAAGGGAGG AACTGGGGTGGTGATGGACGACATGTACGACGGGGTCAATGTGGATGACA AGTGATTCTACATGATGAAGGACGGGAGGGGAATCTACCTAAACCCAGAA GAGGACGCCCCCAAACCGCCAAGGGCCCAGAACAAGCGATTCATCACCAA GGTGATATTCCTTGCTGCTGTGGCAAGGCCTAGGATCTCCGATGGGGTGT GATTTGACGGCAAGGTCGGTATCTGGCCTATCGCGGATACTGTGGCGGCA ATGCGCCGCGGTATGAACCGTAAGAAGGGCACTATGATGCTGAAACCAAC CACGGTCAACGCGGAGAGGTACAAGGAACTCATGATCGAAAAGGTCGTCC CCGCAATCAAGGCGGCAATACCTAGACAACCAGGTCACACGATCTTCGTG CAGCAGGATGGTGCAAAGCCGTACATG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10300:3726..4402+

>mRNA_D-mesarthrocarpus_Contig10300.1.1 ID=mRNA_D-mesarthrocarpus_Contig10300.1.1|Name=mRNA_D-mesarthrocarpus_Contig10300.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=177bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10300:3726..4402+ (Discosporangium mesarthrocarpum MT17_79)
ATGCGCCGCGGTATGAACCGTAAGAAGGGCACTATGATGCTGAAACCAAC
CACGGTCAACGCGGAGAGGTACAAGGAACTCATGATCGAAAAGGTCGTCC
CCGCAATCAAGGCGGCAATACCTAGACAACCAGGTCACACGATCTTCGTG
CAGCAGGATGGTGCAAAGCCGTACATG
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