mRNA_D-mesarthrocarpus_Contig1030.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1030.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1030.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1030.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1030contigD-mesarthrocarpus_Contig1030:2..715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size714
Hectar predicted targeting categoryother localisation
Exons1
Cds size633
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.6263156-UTR-D-mesarthrocarpus_Contig1030:1..381680789170.6263156-UTR-D-mesarthrocarpus_Contig1030:1..38Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1030 2..38 -
1680789170.6522903-UTR-D-mesarthrocarpus_Contig1030:671..7151680789170.6522903-UTR-D-mesarthrocarpus_Contig1030:671..715Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1030 672..715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.6404335-CDS-D-mesarthrocarpus_Contig1030:38..6711680789170.6404335-CDS-D-mesarthrocarpus_Contig1030:38..671Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1030 39..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1030.1.1prot_D-mesarthrocarpus_Contig1030.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1030 39..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1030.1.1

>prot_D-mesarthrocarpus_Contig1030.1.1 ID=prot_D-mesarthrocarpus_Contig1030.1.1|Name=mRNA_D-mesarthrocarpus_Contig1030.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=211bp
MQYPLLASINEMKLSISKLQSDGSGLTGDVGEVHVVENAGSTLASQRLMT
LSIPVGSRQFMRASKVESKSTEVAVGLTSRHHSSDLPTGRGTDLYPPSRL
SERFLLPTGGGMTEVSRTMLPDRLSLSAGHGRPGEEAFSSPPRPRRRSPS
EAEPSVSAADLLPTLSIKAKVEIFTGSKRDRWRRGTGASSCWRSVNFRFD
FGPLFCRNQN*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1030:2..715-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1030.1.1 ID=mRNA_D-mesarthrocarpus_Contig1030.1.1|Name=mRNA_D-mesarthrocarpus_Contig1030.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=714bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1030:2..715- (Discosporangium mesarthrocarpum MT17_79)
CGACAGCATTTGGTCGCGAGGAGATGGAGGCTCTCATTTAACGGATGCAA
TATCCTCTACTGGCTTCCATAAATGAAATGAAGTTGAGTATATCCAAACT
GCAATCGGACGGGTCAGGTTTGACTGGTGATGTCGGGGAGGTCCATGTCG
TGGAAAACGCTGGTTCAACGCTGGCGTCACAGAGGTTGATGACATTGTCA
ATCCCCGTGGGAAGTAGGCAATTCATGCGAGCTTCTAAGGTTGAAAGCAA
GTCGACTGAGGTTGCTGTAGGACTGACGTCGAGGCATCACAGTTCAGACT
TGCCTACAGGTCGTGGTACTGATCTGTACCCACCGAGTCGTTTGTCAGAG
CGTTTCTTGCTCCCGACTGGTGGAGGTATGACGGAAGTTTCTCGAACTAT
GTTACCCGACCGTTTGTCACTCTCGGCTGGTCACGGTCGACCCGGTGAGG
AAGCTTTTTCAAGTCCCCCACGACCCCGAAGGCGATCACCCTCGGAAGCG
GAACCATCAGTAAGTGCCGCCGATTTGCTCCCTACCTTGTCGATTAAGGC
GAAGGTAGAAATATTTACAGGGAGTAAGAGGGACAGGTGGAGGAGAGGGA
CCGGCGCATCCAGTTGTTGGAGGTCAGTTAATTTCCGTTTTGATTTCGGG
CCCCTGTTTTGCAGGAATCAAAATTGAGGGCCAGTGGGAGAAGAAGCGTA
TTGCTGCTATGCTG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1030:2..715-

>mRNA_D-mesarthrocarpus_Contig1030.1.1 ID=mRNA_D-mesarthrocarpus_Contig1030.1.1|Name=mRNA_D-mesarthrocarpus_Contig1030.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=633bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1030:2..715- (Discosporangium mesarthrocarpum MT17_79)
ATGCAATATCCTCTACTGGCTTCCATAAATGAAATGAAGTTGAGTATATC
CAAACTGCAATCGGACGGGTCAGGTTTGACTGGTGATGTCGGGGAGGTCC
ATGTCGTGGAAAACGCTGGTTCAACGCTGGCGTCACAGAGGTTGATGACA
TTGTCAATCCCCGTGGGAAGTAGGCAATTCATGCGAGCTTCTAAGGTTGA
AAGCAAGTCGACTGAGGTTGCTGTAGGACTGACGTCGAGGCATCACAGTT
CAGACTTGCCTACAGGTCGTGGTACTGATCTGTACCCACCGAGTCGTTTG
TCAGAGCGTTTCTTGCTCCCGACTGGTGGAGGTATGACGGAAGTTTCTCG
AACTATGTTACCCGACCGTTTGTCACTCTCGGCTGGTCACGGTCGACCCG
GTGAGGAAGCTTTTTCAAGTCCCCCACGACCCCGAAGGCGATCACCCTCG
GAAGCGGAACCATCAGTAAGTGCCGCCGATTTGCTCCCTACCTTGTCGAT
TAAGGCGAAGGTAGAAATATTTACAGGGAGTAAGAGGGACAGGTGGAGGA
GAGGGACCGGCGCATCCAGTTGTTGGAGGTCAGTTAATTTCCGTTTTGAT
TTCGGGCCCCTGTTTTGCAGGAATCAAAATTGA
back to top