mRNA_D-mesarthrocarpus_Contig103.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig103.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig103.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: A0A1S4DLZ4_TOBAC (uncharacterized protein LOC107831196 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4DLZ4_TOBAC)

HSP 1 Score: 65.5 bits (158), Expect = 3.350e-9
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHKF-IRPGEDIPNPPRG-QSKRVVIKIVFLVAVARHHQLSNGVWL-DGKIG-FSGHRDHDVNRSSKNRAAGTIEIKPV 270
            + VH+D +++ MS+   KF + P E  PNP R  +SK  + K++F+VAV R     +G  L  GKIG F         ++SKNR AGT+EIKP+
Sbjct:   79 NYVHIDEKWFFMSKKSEKFYLLPEEQEPNPYRSCKSKNFITKVMFMVAVVRPRLAKDGTELFSGKIGIFPFVFKEPAKKNSKNRVAGTLEIKPI 172          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: UPI00053FB287 (uncharacterized protein LOC104908611 n=4 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FB287)

HSP 1 Score: 64.7 bits (156), Expect = 9.290e-9
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHKF-IRPGEDIPNPPRGQSKRVVIKIVFLVAVARHHQLSNG-VWLDGKIG-FSGHRDHDVNRSSKNRAAGTIEIKP 267
            +LVHVD +++ MS+   ++ + PGE  P   R +SKR ++KI+F+ A+AR H   NG V  DGKIG F    +    RSS NR AG IE KP
Sbjct:    3 NLVHVDAKWFCMSKISQRYYLAPGEVEPYR-RCKSKRFIVKIMFIAALARPHITVNGEVSFDGKIGIFPFIEEVAAKRSSCNRDAGVIETKP 93          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: UPI000F61069A (uncharacterized protein LOC113760017 n=1 Tax=Coffea eugenioides TaxID=49369 RepID=UPI000F61069A)

HSP 1 Score: 63.2 bits (152), Expect = 5.050e-8
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHKF-IRPGEDIPNPPRGQSKRVVIKIVFLVAVAR-HHQLSNGVWLDGKIG-FSGHRDHDVNRSSKNRAAGTIEIKPV 270
            ++VH+D +++ M++G  K+ + P E+ P     +SK+ ++K++FL AVAR     S     DGKIG F         R+SKNR AGT+E KP+
Sbjct:  172 NMVHIDEKWFYMTKGSEKYYLHPEEEHPMRTC-RSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPI 263          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: W4GWE0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWE0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 9.050e-8
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHK-FIRPGEDIPNPPRGQSKRVVIKIVFLVAVARHHQLSNGV-WLDGKIGFSGHRDH-DVNRSSKNRAAGTIEIKPVTM 276
            + VHVD +++  ++   K ++ PGE+ P+    +SKR + K++FL AVAR   + + V W DGKIG     +     RSS+NRAAGT+  KPV++
Sbjct:  111 NTVHVDEKWFFATKISKKMYLAPGEEPPHRTC-KSKRYITKVMFLSAVARPRWVDDEVGWFDGKIGTWHFTERVPAERSSRNRAAGTLVTKPVSV 204          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: A0A6G0WA19_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WA19_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-7
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  300 VINYFITTVKATISGVSTRDIFA-DDTTLHGK--DGVIEAIEAAAGDNIILESQSANSPDLNVLDLGCFHSVQQLKDDLMVTNAKELVKATVEAFGQYPQETLQ 602
            VIN  I  +KA+    + R +   D+ T HG   D  + A+ +  G   +L  Q  NSPDLNVLDLG F S+Q L+   M     ++++AT+ AF     E L+
Sbjct:   44 VINKVIPAIKASFPSANKRVVLQHDNATPHGSITDAELAAV-STGGRQFVLRRQPPNSPDLNVLDLGFFASIQSLQYKTMSRTVDDVIRATLSAFNDLSYEKLE 146          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: UPI000900EE06 (uncharacterized protein LOC109134360 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000900EE06)

HSP 1 Score: 59.3 bits (142), Expect = 1.250e-7
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  426 GDNIILESQSANSPDLNVLDLGCFHSVQQLKDDLMVTNAKELVKATVEAFGQYPQETLQHCW 611
            G +I L +Q A SPD+NVLDLG F+++Q LKD +   + K+LVKA  +AF  Y  +   H W
Sbjct:    8 GFDIRLINQPAQSPDMNVLDLGFFNAIQTLKDQIAPRSVKQLVKAVNKAFDNYDPKLCNHIW 69          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: UPI000B776627 (uncharacterized protein LOC110728661 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B776627)

HSP 1 Score: 61.2 bits (147), Expect = 1.300e-7
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHKF-IRPGEDIPNPPRGQSKRVVIKIVFLVAVARHHQLSNGVWL-DGKIG-FSGHRDHDVNRSSKNRAAGTIEIKPVT 273
            + +H+D +++ M++G  ++ + PGE  P     +SKR V K++FL AVAR    ++G  + DGKIG F   R     R S+NR AGT+E+KPVT
Sbjct:    3 NTIHLDEKWFYMTKGTQRYYLLPGETQPYRTC-KSKRFVTKVMFLCAVARPRFNADGECIFDGKIGMFPFVRWVPAKRRSRNRPAGTLELKPVT 95          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: UPI000B78B07A (uncharacterized protein LOC110692558 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78B07A)

HSP 1 Score: 61.2 bits (147), Expect = 2.240e-7
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHKF-IRPGEDIPNPPRGQSKRVVIKIVFLVAVARHHQLSNGVWL-DGKIG-FSGHRDHDVNRSSKNRAAGTIEIKPVT 273
            + +H+D +++ M++G  ++ + PGE  P     +SKR V K++FL AVAR    ++G  + DGKIG F   R     R S+NR AGT+E+KPVT
Sbjct:  162 NTIHLDEKWFYMTKGTQRYYLLPGETQPYRTC-KSKRFVTKVMFLCAVARPQFNADGECIFDGKIGMFPFVRWVPAKRRSRNRPAGTLELKPVT 254          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: A0A6P6UZX5_COFAR (uncharacterized protein LOC113715904 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6UZX5_COFAR)

HSP 1 Score: 60.1 bits (144), Expect = 2.680e-7
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHKF-IRPGEDIPNPPRGQSKRVVIKIVFLVAVAR-HHQLSNGVWLDGKIG-FSGHRDHDVNRSSKNRAAGTIEIKPV 270
            ++VH+D +++ M++   K+ + P E+ P     +SK+ ++K++FL AVAR     S     DGKIG F         R+SKNR AGT+E KP+
Sbjct:   60 NMVHIDEKWFYMTKESEKYYLHPEEEHPMRTC-RSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPI 151          
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Match: UPI0007EEFD65 (uncharacterized protein LOC108203252 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EEFD65)

HSP 1 Score: 59.3 bits (142), Expect = 3.130e-7
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 SLVHVDGRFYVMSQGGHK-FIRPGEDIPNPPR-GQSKRVVIKIVFLVAVARHHQLSNGVWL-DGKIG-FSGHRDHDVNRSSKNRAAGTIEIKPV 270
            S+VH+D +++ M++   K ++ P E  P P R  +SKR + K++F+ AVAR    ++G  + DGKIG F   ++    R+SKNRA G +E+KP+
Sbjct:   28 SIVHIDEKWFYMTRISQKDYLLPSE--PEPHRISKSKRFITKVMFISAVARPRFDNDGNCIFDGKIGIFPFTKEEVAVRTSKNRANGVMELKPI 119          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig103.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S4DLZ4_TOBAC3.350e-941.49uncharacterized protein LOC107831196 n=1 Tax=Nicot... [more]
UPI00053FB2879.290e-945.65uncharacterized protein LOC104908611 n=4 Tax=Beta ... [more]
UPI000F61069A5.050e-838.71uncharacterized protein LOC113760017 n=1 Tax=Coffe... [more]
W4GWE0_9STRA9.050e-840.00Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0WA19_9STRA1.070e-736.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI000900EE061.250e-746.77uncharacterized protein LOC109134360 n=1 Tax=Beta ... [more]
UPI000B7766271.300e-741.49uncharacterized protein LOC110728661 n=1 Tax=Cheno... [more]
UPI000B78B07A2.240e-741.49uncharacterized protein LOC110692558 n=2 Tax=Cheno... [more]
A0A6P6UZX5_COFAR2.680e-737.63uncharacterized protein LOC113715904 n=1 Tax=Coffe... [more]
UPI0007EEFD653.130e-739.36uncharacterized protein LOC108203252 n=1 Tax=Daucu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig103contigD-mesarthrocarpus_Contig103:31247..31925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4098.XP_009587210.1
PFAMsHTH_Tnp_Tc3_2
Model size679
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.5e-08
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta,44TRN@71274|asterids
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.5089333-UTR-D-mesarthrocarpus_Contig103:31246..312791680789170.5089333-UTR-D-mesarthrocarpus_Contig103:31246..31279Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig103 31247..31279 +
1680789170.5322912-UTR-D-mesarthrocarpus_Contig103:31525..319251680789170.5322912-UTR-D-mesarthrocarpus_Contig103:31525..31925Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig103 31526..31925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.5212538-CDS-D-mesarthrocarpus_Contig103:31279..315251680789170.5212538-CDS-D-mesarthrocarpus_Contig103:31279..31525Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig103 31280..31525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig103.4.1prot_D-mesarthrocarpus_Contig103.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig103 31280..31525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig103.4.1

>prot_D-mesarthrocarpus_Contig103.4.1 ID=prot_D-mesarthrocarpus_Contig103.4.1|Name=mRNA_D-mesarthrocarpus_Contig103.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=82bp
MSQGGHKFIRPGEDIPNPPRGQSKRVVIKIVFLVAVARHHQLSNGVWLDG
KIGFSGHRDHDVNRSSKNRAAGTIEIKPVTM*
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mRNA from alignment at D-mesarthrocarpus_Contig103:31247..31925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig103.4.1 ID=mRNA_D-mesarthrocarpus_Contig103.4.1|Name=mRNA_D-mesarthrocarpus_Contig103.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=679bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig103:31247..31925+ (Discosporangium mesarthrocarpum MT17_79)
AGCTTGGTGCATGTGGACGGACGGTTCTACGTGATGAGTCAGGGGGGCCA TAAGTTCATCCGGCCTGGTGAGGACATCCCCAACCCTCCCAGGGGACAGA GCAAGAGGGTCGTTATCAAGATCGTGTTTCTCGTGGCTGTGGCTAGGCAC CACCAGCTATCCAACGGGGTCTGGTTGGATGGCAAGATTGGATTCTCAGG TCACAGAGACCACGACGTCAACCGCTCCAGTAAGAATCGTGCTGCTGGTA CCATAGAAATCAAACCAGTCACCATGTAGGGGAACAGTCCAAGCAGATAG TGATCAATTATTTTATAACTACTGTCAAGGCAACTATATCAGGAGTCTCA ACACGCGACATCTTTGCTGATGACACCACGTTACACGGTAAGGACGGGGT CATTGAAGCCATTGAGGCGGCGGCGGGGGACAACATCATACTGGAATCAC AGTCAGCCAATTCACCTGACCTCAATGTTCTCGACCTAGGCTGCTTCCAC TCCGTCCAGCAACTGAAGGATGACCTTATGGTGACCAACGCGAAGGAGCT GGTCAAGGCCACAGTAGAGGCGTTCGGACAATACCCCCAGGAGACCCTGC AACACTGTTGGCATTGCCATTGTACTGTTATGGTGATGTGCTTGGGTGCA AGGGTAACAACAACTTCAAGATACCCCAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig103:31247..31925+

>mRNA_D-mesarthrocarpus_Contig103.4.1 ID=mRNA_D-mesarthrocarpus_Contig103.4.1|Name=mRNA_D-mesarthrocarpus_Contig103.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=246bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig103:31247..31925+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGTCAGGGGGGCCATAAGTTCATCCGGCCTGGTGAGGACATCCCCAA
CCCTCCCAGGGGACAGAGCAAGAGGGTCGTTATCAAGATCGTGTTTCTCG
TGGCTGTGGCTAGGCACCACCAGCTATCCAACGGGGTCTGGTTGGATGGC
AAGATTGGATTCTCAGGTCACAGAGACCACGACGTCAACCGCTCCAGTAA
GAATCGTGCTGCTGGTACCATAGAAATCAAACCAGTCACCATGTAG
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