mRNA_D-mesarthrocarpus_Contig10297.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10297.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10297.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: D7FT88_ECTSI (Putative glutamate/ornithine acetyltransferase (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT88_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.560e-17
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1
Query:    1 GDLNMLLRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            G L +LLRHWFIP+DVTPDYY FT WR+FQRF+A T+NVFGTQ
Sbjct:  175 GGLQLLLRHWFIPEDVTPDYYHFTFWRMFQRFVAGTINVFGTQ 217          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A835YQZ5_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.150e-14
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 GDLNMLLRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            GDL   L+H FIP+DV+PDY++FT WR+FQRF+AATV+V GTQ
Sbjct:  150 GDLRAFLKHCFIPEDVSPDYFNFTRWRIFQRFVAATVSVLGTQ 192          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A7S2WMF6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMF6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.140e-10
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1
Query:   16 LLRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            L +H F+P+ VT DYYSFT WR FQRF++AT+NVFG Q
Sbjct:  121 LAQHTFVPEGVTADYYSFTRWRCFQRFVSATINVFGVQ 158          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A7S1TJW4_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJW4_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 2.140e-10
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   19 LRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            LRH FIP+DVTPDYYSF+ WR  QR I++TV VFGTQ
Sbjct:  408 LRHAFIPEDVTPDYYSFSAWRFVQRCISSTVGVFGTQ 444          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A0G4G9L5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G9L5_9ALVE)

HSP 1 Score: 63.2 bits (152), Expect = 2.140e-10
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1
Query:   19 LRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            ++H  +PD+VTPDYYS+T WR+ QRF++ATVNVFGTQ
Sbjct:  356 VQHALLPDNVTPDYYSYTFWRMVQRFLSATVNVFGTQ 392          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A5J4YLU1_PORPP (Protein root UVB sensitive 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLU1_PORPP)

HSP 1 Score: 62.8 bits (151), Expect = 2.920e-10
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1
Query:   16 LLRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            LL+H FIP+DV+PDYYSF+ WR  QR ++ATV VFGTQ
Sbjct:  483 LLKHAFIPEDVSPDYYSFSAWRFVQRIMSATVGVFGTQ 520          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A1X6NWJ7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWJ7_PORUM)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   31 FIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            F P+DVTPDYYSFT WR FQR ++ATV VFGTQ
Sbjct:  113 FFPEDVTPDYYSFTAWRFFQRCVSATVGVFGTQ 145          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: R7QC83_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QC83_CHOCR)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 1
Query:   13 MLLRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            M     F PDDVTPDYYSFT WR  QR ++AT+ VFGT 
Sbjct:  368 MFFTRSFFPDDVTPDYYSFTAWRFSQRCVSATIGVFGTS 406          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A7S4MR82_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7S4MR82_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.190e-8
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   16 LLRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            LL+  FIP+ VTP YYSF  WR+ QRF+ A V+VFGTQ
Sbjct:  139 LLKSSFIPEGVTPSYYSFMKWRILQRFVNANVHVFGTQ 176          
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Match: A0A7S2BSH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSH1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.140e-8
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   19 LRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQ 129
            ++H F+P+ V+ DY+ FT WR FQR ++A VNVFGTQ
Sbjct:  154 IKHTFVPEGVSQDYFRFTKWRCFQRLVSAMVNVFGTQ 190          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10297.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FT88_ECTSI3.560e-1776.74Putative glutamate/ornithine acetyltransferase (IS... [more]
A0A835YQZ5_9STRA7.150e-1467.44Vitamin B6 photo-protection and homoeostasis-domai... [more]
A0A7S2WMF6_9STRA2.140e-1065.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1TJW4_9RHOD2.140e-1072.97Hypothetical protein (Fragment) n=2 Tax=Erythrolob... [more]
A0A0G4G9L5_9ALVE2.140e-1067.57Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A5J4YLU1_PORPP2.920e-1068.42Protein root UVB sensitive 1, chloroplastic n=1 Ta... [more]
A0A1X6NWJ7_PORUM1.020e-975.76Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QC83_CHOCR1.700e-861.54Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S4MR82_9STRA3.190e-863.16Hypothetical protein n=2 Tax=Odontellaceae TaxID=2... [more]
A0A7S2BSH1_9STRA8.140e-856.76Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10297contigD-mesarthrocarpus_Contig10297:4095..4235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT88
PFAMsDUF647
Model size141
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.06e-16
EggNOG OGsKOG4249@1|root,KOG4249@2759|Eukaryota
Descriptionresponse to UV-B
Cds size129
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.3127468-UTR-D-mesarthrocarpus_Contig10297:4094..41061680789170.3127468-UTR-D-mesarthrocarpus_Contig10297:4094..4106Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10297 4095..4106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.3249116-CDS-D-mesarthrocarpus_Contig10297:4106..42351680789170.3249116-CDS-D-mesarthrocarpus_Contig10297:4106..4235Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10297 4107..4235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10297.3.1prot_D-mesarthrocarpus_Contig10297.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10297 4107..4235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10297.3.1

>prot_D-mesarthrocarpus_Contig10297.3.1 ID=prot_D-mesarthrocarpus_Contig10297.3.1|Name=mRNA_D-mesarthrocarpus_Contig10297.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=43bp
MLLRHWFIPDDVTPDYYSFTTWRVFQRFIAATVNVFGTQVCS*
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mRNA from alignment at D-mesarthrocarpus_Contig10297:4095..4235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10297.3.1 ID=mRNA_D-mesarthrocarpus_Contig10297.3.1|Name=mRNA_D-mesarthrocarpus_Contig10297.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=141bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10297:4095..4235+ (Discosporangium mesarthrocarpum MT17_79)
GGGGACTTGAACATGCTGCTGCGACATTGGTTCATTCCGGATGACGTCAC GCCGGACTACTACAGTTTCACCACCTGGAGGGTGTTCCAGCGCTTCATTG CTGCCACAGTGAACGTCTTCGGCACCCAGGTTTGCTCCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10297:4095..4235+

>mRNA_D-mesarthrocarpus_Contig10297.3.1 ID=mRNA_D-mesarthrocarpus_Contig10297.3.1|Name=mRNA_D-mesarthrocarpus_Contig10297.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=129bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10297:4095..4235+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTGCTGCGACATTGGTTCATTCCGGATGACGTCACGCCGGACTACTA
CAGTTTCACCACCTGGAGGGTGTTCCAGCGCTTCATTGCTGCCACAGTGA
ACGTCTTCGGCACCCAGGTTTGCTCCTAG
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