mRNA_D-mesarthrocarpus_Contig10288.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10288.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10288.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: D7G3G5_ECTSI (Electron donor (NADH / NADPH)-dependent reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3G5_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.250e-32
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +VIGFHFVGPNAGEITQGF LAVRLGAKKSDF+K+VGIHP+D ESFCA+ ITRSSG+SF AEGGCGGGVCG
Sbjct:  450 KVIGFHFVGPNAGEITQGFGLAVRLGAKKSDFNKLVGIHPSDAESFCAMGITRSSGVSFVAEGGCGGGVCG 520
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A835YZJ1_9STRA (Electron donor-dependent reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.180e-30
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V+GFHFVGPNAGE+TQGFALA++LGAKK+DFDK+VGIHPTD E+FC L ITRSSG+ F A GGCGGG CG
Sbjct:  451 RVVGFHFVGPNAGELTQGFALALKLGAKKADFDKLVGIHPTDAEAFCGLEITRSSGIDFVAAGGCGGGTCG 521
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A6V1S882_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S882_HETAK)

HSP 1 Score: 121 bits (304), Expect = 6.680e-28
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V+GFHFVGPNAGE+TQGF L ++LGAKK+DFD+MVGIHPTD ESF  L ITR+SG ++ AEGGCGGGVCG
Sbjct:  445 RVLGFHFVGPNAGEMTQGFGLTLKLGAKKADFDEMVGIHPTDAESFATLEITRASGQAWLAEGGCGGGVCG 515
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A0G4FWZ3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FWZ3_VITBC)

HSP 1 Score: 121 bits (304), Expect = 8.900e-28
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V+GFH+VG NAGE+TQGFALA+RLGA KSDFDKM+GIHPTD ES+C L++TR SG SF A GGCGGG CG
Sbjct:  486 RVVGFHYVGLNAGEVTQGFALALRLGATKSDFDKMIGIHPTDAESYCGLTVTRRSGESFVAAGGCGGGKCG 556
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A1B1DX85_9APIC (Thioredoxin reductase 2 n=1 Tax=Plasmodium coatneyi TaxID=208452 RepID=A0A1B1DX85_9APIC)

HSP 1 Score: 122 bits (305), Expect = 9.100e-28
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V+GFH+VGPNAGEITQG ALA+RL AKKSDFDK VGIHPTD ESF  L+ITRSSG+SF A+GGCGGG CG
Sbjct:  559 RVVGFHYVGPNAGEITQGMALALRLKAKKSDFDKCVGIHPTDAESFMNLTITRSSGLSFAAKGGCGGGKCG 629
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A0G4IA54_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IA54_9ALVE)

HSP 1 Score: 117 bits (292), Expect = 1.060e-27
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +VIGFHFVGPNAGE+TQGF+LA+RLGA+K D D  VGIHPTD ES   LS+TRSSG SF A GGCGGG CG
Sbjct:  206 KVIGFHFVGPNAGEVTQGFSLAMRLGARKKDLDSTVGIHPTDAESLVQLSVTRSSGESFAAAGGCGGGKCG 276
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A5K1UGS4_PLAKH (Thioredoxin reductase, putative n=3 Tax=Plasmodium knowlesi TaxID=5850 RepID=A0A5K1UGS4_PLAKH)

HSP 1 Score: 121 bits (304), Expect = 1.220e-27
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V+GFH+VGPNAGEITQG ALA+RL AKKSDFDK +GIHPTD ESF  L+ITRSSG+SF A+GGCGGG CG
Sbjct:  553 RVVGFHYVGPNAGEITQGMALALRLKAKKSDFDKCIGIHPTDAESFMNLTITRSSGLSFAAKGGCGGGKCG 623
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A7S0D5X6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D5X6_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 1.490e-27
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V GFHFVGPNAGEITQGFALAV LGAKK DFD+MVGIHPTD ESF AL IT+SSG S+ A GGCGGG CG
Sbjct:  525 KVAGFHFVGPNAGEITQGFALAVLLGAKKRDFDRMVGIHPTDAESFAALHITKSSGESWVAAGGCGGGKCG 595
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: A0A0D9QKC0_PLAFR (Thioredoxin reductase n=1 Tax=Plasmodium fragile TaxID=5857 RepID=A0A0D9QKC0_PLAFR)

HSP 1 Score: 120 bits (301), Expect = 3.020e-27
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V+GFH+VGPNAGEITQG ALA+RL AKKSDFD  +GIHPTD ESF +L++TRSSG+SF A+GGCGGG CG
Sbjct:  546 RVVGFHYVGPNAGEITQGMALALRLKAKKSDFDNCIGIHPTDAESFMSLTVTRSSGLSFAAKGGCGGGKCG 616
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BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Match: K6V9G0_PLACD (Thioredoxin reductase 2 (Fragment) n=1 Tax=Plasmodium cynomolgi (strain B) TaxID=1120755 RepID=K6V9G0_PLACD)

HSP 1 Score: 120 bits (300), Expect = 4.290e-27
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 QVIGFHFVGPNAGEITQGFALAVRLGAKKSDFDKMVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG 213
            +V+GFH+VGPNAGEITQG ALA+RL AKKSDFD  VGIHPTD ESF  L+ITRSSG+SF A+GGCGGG CG
Sbjct:  558 RVVGFHYVGPNAGEITQGMALALRLKAKKSDFDNCVGIHPTDAESFMNLTITRSSGLSFAAKGGCGGGKCG 628
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10288.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G5_ECTSI1.250e-3285.92Electron donor (NADH / NADPH)-dependent reductase ... [more]
A0A835YZJ1_9STRA4.180e-3077.46Electron donor-dependent reductase n=1 Tax=Tribone... [more]
A0A6V1S882_HETAK6.680e-2874.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4FWZ3_VITBC8.900e-2874.65Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A1B1DX85_9APIC9.100e-2878.87Thioredoxin reductase 2 n=1 Tax=Plasmodium coatney... [more]
A0A0G4IA54_9ALVE1.060e-2774.65Uncharacterized protein (Fragment) n=1 Tax=Chromer... [more]
A0A5K1UGS4_PLAKH1.220e-2777.46Thioredoxin reductase, putative n=3 Tax=Plasmodium... [more]
A0A7S0D5X6_9EUKA1.490e-2780.28Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0D9QKC0_PLAFR3.020e-2774.65Thioredoxin reductase n=1 Tax=Plasmodium fragile T... [more]
K6V9G0_PLACD4.290e-2777.46Thioredoxin reductase 2 (Fragment) n=1 Tax=Plasmod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10288contigD-mesarthrocarpus_Contig10288:2671..4340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3G5
Preferred nameTXNRD1
PFAMsGlutaredoxin,Pyr_redox_2,Pyr_redox_dim
Model size812
Max annot lvl2759|Eukaryota
KEGG rclassRC02518,RC02873
KEGG koko:K22182
KEGG ReactionR03596,R09372
KEGG Pathwayko00450,ko05200,ko05225,map00450,map05200,map05225
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000302,GO:0000305,GO:0001650,GO:0001704,GO:0001707,GO:0001887,GO:0001890,GO:0003006,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006518,GO:0006520,GO:0006575,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006749,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009069,GO:0009117,GO:0009611,GO:0009628,GO:0009636,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010269,GO:0010941,GO:0010942,GO:0012505,GO:0015036,GO:0015949,GO:0016043,GO:0016174,GO:0016209,GO:0016259,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016999,GO:0017001,GO:0017144,GO:0018996,GO:0019216,GO:0019222,GO:0019362,GO:0019637,GO:0019725,GO:0019752,GO:0022404,GO:0022414,GO:0022607,GO:0023052,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0033797,GO:0034599,GO:0034641,GO:0036295,GO:0036296,GO:0036477,GO:0042221,GO:0042303,GO:0042395,GO:0042493,GO:0042537,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045340,GO:0045454,GO:0046483,GO:0046496,GO:0046688,GO:0046872,GO:0046914,GO:0046983,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048598,GO:0048608,GO:0048646,GO:0048678,GO:0048729,GO:0048731,GO:0048856,GO:0050664,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051259,GO:0051262,GO:0051716,GO:0055086,GO:0055093,GO:0055114,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070276,GO:0070482,GO:0070887,GO:0070995,GO:0071241,GO:0071248,GO:0071280,GO:0071453,GO:0071455,GO:0071704,GO:0071840,GO:0072524,GO:0072593,GO:0080090,GO:0097237,GO:0097458,GO:0098623,GO:0098625,GO:0098626,GO:0098754,GO:0098869,GO:1901360,GO:1901564,GO:1901605,GO:1901700,GO:1990748
Exons2
Evalue8.46e-14
EggNOG OGsCOG1249@1|root,KOG4716@2759|Eukaryota
Ec32 ortholog descriptionElectron donor (NADH / NADPH)-dependent reductase
Ec32 orthologEc-19_004520.1
EC1.8.1.9
Descriptionthioredoxin-disulfide reductase activity
Cds size114
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789169.6336477-UTR-D-mesarthrocarpus_Contig10288:2670..32661680789169.6336477-UTR-D-mesarthrocarpus_Contig10288:2670..3266Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10288 2671..3266 -
1680789169.6677332-UTR-D-mesarthrocarpus_Contig10288:4238..43401680789169.6677332-UTR-D-mesarthrocarpus_Contig10288:4238..4340Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10288 4239..4340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789169.6459894-CDS-D-mesarthrocarpus_Contig10288:3266..33771680789169.6459894-CDS-D-mesarthrocarpus_Contig10288:3266..3377Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10288 3267..3377 -
1680789169.6559083-CDS-D-mesarthrocarpus_Contig10288:4235..42381680789169.6559083-CDS-D-mesarthrocarpus_Contig10288:4235..4238Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10288 4236..4238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10288.2.1prot_D-mesarthrocarpus_Contig10288.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10288 3267..4238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10288.2.1

>prot_D-mesarthrocarpus_Contig10288.2.1 ID=prot_D-mesarthrocarpus_Contig10288.2.1|Name=mRNA_D-mesarthrocarpus_Contig10288.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=38bp
MVGIHPTDVESFCALSITRSSGMSFTAEGGCGGGVCG*
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mRNA from alignment at D-mesarthrocarpus_Contig10288:2671..4340-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10288.2.1 ID=mRNA_D-mesarthrocarpus_Contig10288.2.1|Name=mRNA_D-mesarthrocarpus_Contig10288.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1670bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10288:2671..4340- (Discosporangium mesarthrocarpum MT17_79)
CAGGTCATCGGGTTCCACTTTGTGGGCCCCAATGCCGGGGAGATCACCCA
AGGCTTCGCGTTGGCAGTGCGTCTTGGGGCAAAGAAATCCGATTTCGATA
AGATGGTGAGGGTTCCACCTAGCCTCTGTAGTAGGTATGTTTGTAGGCCT
GCACGGGGTGGAGGGGGTGAGGAATGTACGCTGGCTGATCACTTTGGTCC
TCCTGAGAGAAAAAAAATAGAGTGCTTGGTAAGAGGTAGCCCCCGGCTTG
TAAGATGGCATCAAACTGCGGTATGCACACTTAGTAGTAGTGTGTTGCAT
AGGCAGCTCTACGTTTCAACCACGCATTACATTGGCTTGGCTTGTGCAAG
TATGCAGTAATCCTGCAGCGCTACATACTTGGTAGAGTCTAGGGTTATGG
TTGCCACAGCGTGTGGCCTGGGGGGGGGGGGTTCGGTTGGACTTGAGCTC
CAGATCGTTTTTTTGTTTGGTGCTTGGTGTTTTGCACCTGGAAGGGACTT
GACTGTTTTTGTAGAGAAAGCCCTAAGGTGGCATTTTAGCAGGTCCTGTC
CGATATTTGAAACTGAGGGTTATGGAGTTACTATTTCGAAACCATTGGGT
GTTGTGTTAGGCAGATCGGGCACATTTTGAAAACACTGAGGAGGAAAATA
TATCCAGCGGTACTCCAGGGTAACATGTAGACTGCCTTAACCCTACCCTT
GTGATGATGTTCCTCGTAGAACTAATTTTTTCACCATAGGACGCTTTGCT
AAGGTAGTTTCATGTGTAAGGCTTTCGATCAAAGTGCCCGTGCCCTCACA
GTATCGGTAATCCACTTCCAGTTGTTGCCCCTGCCTCCAGTTTGATCAAT
TGAGCTACCATCTGTGGTCGCGGCCCCAACCTGCACATCCAGTGCTCACT
GAACATTTTCCCCTTCCCATTTTTTTTTACTCCGCCCATCTCCTCCGCCT
CTGCTCCCCTAAGGTTGGCATCCACCCGACAGATGTGGAGAGTTTCTGTG
CATTGTCCATCACTCGATCTTCAGGGATGTCTTTCACGGCTGAGGGGGGG
TGTGGGGGGGGCGTTTGTGGTTAATGAGAGGTATATATATGATACGTGTA
GTATGCAGTGCTCATTAAAAGAGGCAGCCAGGGACTTGAATGACTTGTGT
TCGGTTTCAACGAAGATTAGGGCCATCACAGTGGCGGGTGTTATCAGTCT
CTTGTTTCATGTAGCAATGGTGTGTTATCCATCAAACTCTTGGCAATCCA
TGCATGTAACATTTGCTTGGGCCTTCCAACTCATATTTCTAATTATTATT
ATATTTGCTGTGCTTTGGGAGGTCCGGAGTGGATGGCACGGACAGCTAAA
GAGTAGGAATGGTGTTTTTCTTTTCGATAATCGACTAAACTTTTTTATTC
TTGACTTCCACAACGAGGTAGCTTGCTTGTATTCACCCCTGCTAGCTTCC
TGAAGAATCAGCAGAGTGCTAAGCAGGGAATGAATGCTGGTGGTAGCGTC
TTGTCTTGTGTGGGGCGTGGGCATCCTGAGATGTCTGTCAGTGTGAATGT
GTGGAGATGCATACACATATGAGGACCCACTCGATTATTGAGGTGATTGA
CCTGTAAGTCCTTGGACAACATAGACAGCAAGCAGTGCTCATCATGCACC
AAAGCAGGTACCATACCCCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10288:2671..4340-

>mRNA_D-mesarthrocarpus_Contig10288.2.1 ID=mRNA_D-mesarthrocarpus_Contig10288.2.1|Name=mRNA_D-mesarthrocarpus_Contig10288.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=114bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10288:2671..4340- (Discosporangium mesarthrocarpum MT17_79)
ATGGTTGGCATCCACCCGACAGATGTGGAGAGTTTCTGTGCATTGTCCAT
CACTCGATCTTCAGGGATGTCTTTCACGGCTGAGGGGGGGTGTGGGGGGG
GCGTTTGTGGTTAA
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