mRNA_D-mesarthrocarpus_Contig10285.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10285.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10285.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10285contigD-mesarthrocarpus_Contig10285:889..2303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size442
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789169.5251102-CDS-D-mesarthrocarpus_Contig10285:888..10651680789169.5251102-CDS-D-mesarthrocarpus_Contig10285:888..1065Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10285 889..1065 -
1680789169.5367215-CDS-D-mesarthrocarpus_Contig10285:2040..22681680789169.5367215-CDS-D-mesarthrocarpus_Contig10285:2040..2268Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10285 2041..2268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789169.550319-UTR-D-mesarthrocarpus_Contig10285:2268..23031680789169.550319-UTR-D-mesarthrocarpus_Contig10285:2268..2303Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10285 2269..2303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10285.1.1prot_D-mesarthrocarpus_Contig10285.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10285 889..2268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10285.1.1

>prot_D-mesarthrocarpus_Contig10285.1.1 ID=prot_D-mesarthrocarpus_Contig10285.1.1|Name=mRNA_D-mesarthrocarpus_Contig10285.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=135bp
MQQGEKEGCGATNVAEPKDEGGAMRVAEPEGAEPGGKKGWELDGGVTMGL
LAVGISIGSILAKEGGLTVGNLITWQLSLLALALSLGVETRGNGFVGSKK
QGSGRGYDSGGAGWGGVRASSRALPSPRECLPLPS
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mRNA from alignment at D-mesarthrocarpus_Contig10285:889..2303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10285.1.1 ID=mRNA_D-mesarthrocarpus_Contig10285.1.1|Name=mRNA_D-mesarthrocarpus_Contig10285.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1415bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10285:889..2303- (Discosporangium mesarthrocarpum MT17_79)
AGGGTTGGGGTTACGGATAGGACCACGGCTACATTATGCAACAAGGAGAG
AAGGAAGGCTGTGGCGCCACAAACGTTGCCGAGCCTAAGGACGAAGGTGG
AGCCATGCGTGTGGCGGAACCCGAGGGTGCGGAGCCAGGAGGGAAGAAGG
GGTGGGAGCTCGATGGGGGGGTGACGATGGGCCTGTTGGCGGTGGGGATC
AGCATCGGGAGCATACTGGCGAAGGAGGGCGGGCTGACGGTCGGTAACCT
CATAACATGGCAGGTTCGTGCTACGTACATACGTACGTCGCCCGTGAACA
GTGCCCTGGAGCATCAACCCGGAACATTGTCCAGGGGCGGTGACCTGGGT
CAGTGCCCTGAGGCGTTGGGCTCGAAGTGACTCAGGGACAGTGCCCTGGA
GCTTTAGCCTGGGGCAATGCCCTGGAGCAATTCAGGATGTCCTTGCTTTG
AAGCATTGTGCATATGTGCTGTTCTTACTTTGCTAGCTGAGTTAAGTGCT
TCAAAGTACTAAGAAGAAAGGGAGCAGGCGGTGGTCTGGGAAAGTTAATA
AATCTTTCATTGTTATTCCTCATGATGTCAACTCCTAGGGAGTGTGGGTG
TAGGTCTGTTCTCACACAAGGGTTAGGGTTGGGTTGAGGGTAGAGTATTG
CCGAGTCTGAGGGCAACAGAAAAGAAGATCCATCCAACCCCCCCCAGCTG
GGAACGCGGGGAAAGGGGATGTTTTGACCTCAGATGGGTGGCCCAGTCTG
GCTTAACTTGTGAGTTTCTTTTTCTTTTTTCCTGAAAAGAAACGAAAGAA
TAAAAAATGCCCTAACCCTAACCCCAACCCTTAACCCTTGCTTGTCATGT
ACTAGTTTAAGAATTGTTATGGAGGAGAGGGATTTCGAAGAAATTGAGGG
GTAGGAGTAGGGCTAGGGTGGAACCTAAAACCCTGACCCCAACCCTGACC
CTAACCCTGACCCTAACCCCAACCCTAATGCTGATCCCAACCTTAACCCT
CACCCAAACCTGACCCCGACCTAGCAAATAGCAAAGAATGCGGGATGCGG
ATGGTCAAGGATGACAAAAGGCGGGGACTGACCCCCCTCCTGCTGCTCCT
CGCCCCCCCCCTGCCCCCCCCCCCCTTCCTCCCGCCCCAACCCTAACCCT
AAAACTAATGCAGTCACCCTTCCCCCCTGCCCATGAGTACCTTCTGGGCC
ACTCCCTCTCACTCCCTTCTCACTTTCTCTTGCTCCAGCTGTCCCTTCTG
GCCCTGGCCCTCTCGCTTGGTGTGGAAACCCGAGGGAATGGCTTCGTTGG
CAGCAAGAAGCAGGGGTCAGGGAGGGGATACGACAGCGGTGGCGCGGGGT
GGGGGGGGGTGCGAGCTTCCTCTCGGGCTTTGCCATCCCCAAGGGAGTGT
CTGCCATTGCCCTCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10285:889..2303-

>mRNA_D-mesarthrocarpus_Contig10285.1.1 ID=mRNA_D-mesarthrocarpus_Contig10285.1.1|Name=mRNA_D-mesarthrocarpus_Contig10285.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=405bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10285:889..2303- (Discosporangium mesarthrocarpum MT17_79)
ATGCAACAAGGAGAGAAGGAAGGCTGTGGCGCCACAAACGTTGCCGAGCC
TAAGGACGAAGGTGGAGCCATGCGTGTGGCGGAACCCGAGGGTGCGGAGC
CAGGAGGGAAGAAGGGGTGGGAGCTCGATGGGGGGGTGACGATGGGCCTG
TTGGCGGTGGGGATCAGCATCGGGAGCATACTGGCGAAGGAGGGCGGGCT
GACGGTCGGTAACCTCATAACATGGCAGCTGTCCCTTCTGGCCCTGGCCC
TCTCGCTTGGTGTGGAAACCCGAGGGAATGGCTTCGTTGGCAGCAAGAAG
CAGGGGTCAGGGAGGGGATACGACAGCGGTGGCGCGGGGTGGGGGGGGGT
GCGAGCTTCCTCTCGGGCTTTGCCATCCCCAAGGGAGTGTCTGCCATTGC
CCTCG
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