mRNA_D-mesarthrocarpus_Contig1028.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1028.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1028.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A6H5JYA6_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYA6_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 6.630e-75
Identity = 145/290 (50.00%), Postives = 182/290 (62.76%), Query Frame = 3 
Query:  222 LLVTGNAGAKHTEPTSWNREMQQECLSRGKFL---GIEVGAVTAALAAGTLAPRIVAAASEASSSN--PVVTSTCLIEVRIMEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKYALVDAQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILAS-PLLLESSG--LPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCFFLFCLSSLALDVMHDVR--DNTSFLL 1061
            LL+   + A    P+S   E Q   +     L   G+    + AA A            S AS++   P VTS C IEVRIMEPLNE+N +SS NA++G+++FG+YGK +PKA ENFL+Y   D  +  PSYAS Q+ +M PGV LEGGKI GLN I IGGQEELEYGGE++A  P LLE+S    PH+RRGLLTR  L+RGPEFGITLGAAP L+  H VFG LL+G+DVL RLE+VP+  G S  EEGS+A + F+AQ        L  +  +V  D R  D T  L+
Sbjct:   33 LLLQRPSPAATASPSSTRSEFQLHAMVEDSMLSRSGLMAAGLKAAAAXXXXXXXXXXGVSPASAAGVEPEVTSKCFIEVRIMEPLNEANGYSSKNAFKGRLVFGVYGKESPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSNNRPHDRRGLLTRDRLSRGPEFGITLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRA-----LVYIGKNVFRDERAVDRTGSLM 317
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: D8LHC5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHC5_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 9.110e-68
Identity = 119/209 (56.94%), Postives = 149/209 (71.29%), Query Frame = 3 
Query:  450 MEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKYALVDAQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILAS-PLLLESSG--LPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCFFLFCLSSLALDVMHDVR--DNTSFLL 1061
            MEPLNE+N +SS NA++G+++FG+YGK +PKA ENFL+Y   D  +  PSYAS Q+ +M PGV LEGGKI GLN I IGGQEELEYGGE++A  P LLE+S    PH+RRGLLTR  L+RGPEFG+TLGAAP L+  H VFG LL+G+DVL RLE+VP+  G S  EEGS+A + F+AQ        L  +  +V  D R  D T  L+
Sbjct:    1 MEPLNEANGYSSKNAFKGRLVFGVYGKESPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPSLDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRA-----LVYIGKNVFRDERAVDRTGSLM 204
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A7S4DA21_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA21_HETAK)

HSP 1 Score: 174 bits (442), Expect = 1.590e-47
Identity = 102/236 (43.22%), Postives = 147/236 (62.29%), Query Frame = 3 
Query:  291 ECLSRGKFLGIEVGAVTAALAAGTLAPRIVAAASEASSSNPVVTSTCLIEVRIMEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKY--ALVDAQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSV-FGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCF 989
            + ++R  F+G+   ++ + LAAG  +P +  AA E    +P +T    ++++I   LNESNNF+S N Y+G+++FGL+G+AAP++V   L+Y  A  D ++  P+YA    M      +LEGG+IKGL  + I G  + EY G+++  P   E S   HNRRGLLTR S + GPEFG+TL  AP L+    V FG LLEG+DVL+ LE VP     STQ  GS+AD+ +RAQ+  F
Sbjct:   60 QAVTRDHFIGL--ASLASYLAAGLGSPAL--AAPETPVLSPKITHKVFMDIQIASILNESNNFTSYNDYKGRLVFGLWGEAAPRSVRTALRYFDAGPDPEAPGPTYARGAAMTSRGPTLLEGGRIKGLQQVNIAGSLQYEYRGKVIVGPSAFELSPTKHNRRGLLTRDSFSTGPEFGVTLADAPELDDGRRVVFGELLEGEDVLQALELVPTYQAGSTQPRGSLADDWYRAQRDFF 291
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A836CET4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.170e-47
Identity = 88/177 (49.72%), Postives = 117/177 (66.10%), Query Frame = 3 
Query:  450 MEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKYALVDAQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQK 980
            MEPL E+N +SS +A  GK++  L+G  APK VE FL Y   +     PSYASS   R+VPG  L+GG+I GLN I + G  +L+Y G I  +    ES+ L H+ RGLLT+  L  GPEF ITLG  P L+  + VFG ++EG++ LR LE+VP+ +  STQEEGS+ADN +RAQ+
Sbjct:    1 MEPLTEANGYSSASAPTGKLVLELFGTEAPKTVEAFLSYITPEPADSGPSYASSLFTRLVPGRQLDGGRISGLNQISLAGSSQLQYFGRIFPATPSFESNALRHDCRGLLTKSKLEAGPEFTITLGPCPELDASNVVFGRVVEGEETLRALEQVPLYSSGSTQEEGSVADNWYRAQR 177
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A7S0LLF5_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LLF5_9EUKA)

HSP 1 Score: 141 bits (355), Expect = 3.500e-35
Identity = 80/198 (40.40%), Postives = 115/198 (58.08%), Query Frame = 3 
Query:  411 PVVTSTCLIEVRIMEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKY-----ALVDAQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCF 989
            P  T+   ++VRI++  +      +  A RG+M+F LYG AAP+  + F  +            + PSY SS   R+ PGV++EGG+I GL+     GQ E +Y   +L    ++E + + H RRGLLTR  L  GPEFG+TL AAP L+    V G L EGD++L  +E +P I+G S +E GS+AD +F+AQK  F
Sbjct:   67 PKATTRAFMDVRIIQRFDVEVLEDA--AVRGRMVFDLYGDAAPRGTDRFADFIKGSVGQFKGSVDGPSYRSSSFERLRPGVLVEGGRITGLDLTPFAGQLEYQYRSRLLQLRPVMEVNDIRHTRRGLLTRRILNSGPEFGVTLAAAPSLDGSWEVIGELQEGDELLALIEGLPFISGKSLEEPGSLADQVFQAQKSLF 262
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A7S0JDD1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JDD1_9EUKA)

HSP 1 Score: 134 bits (338), Expect = 1.070e-33
Identity = 80/192 (41.67%), Postives = 110/192 (57.29%), Query Frame = 3 
Query:  504 KMLFGLYGKAAPKAVENFLKYALVDAQS-----ERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCFFLFCLSSLALDVMHD-VRDNTSFLL 1061
            +M+FGLY +AAP   E F+ +            + PSY SS   R+ PGV+ EGG+I GL+     GQ E +Y   +L    +LE + L H++RGLLTR  L  GPEFG+TL AAP L+    V G L +G ++L  +EE+P ITG S ++ GS+A+ +F+AQK  F     SSL+  V      D T  LL
Sbjct:    9 RMVFGLYNEAAPLGTERFVNFVQGSVGQFKGTLDGPSYRSSCFERLRPGVVAEGGRITGLDLTPFAGQLEYQYRSRLLPLRPVLEVNDLKHSQRGLLTRRILNAGPEFGVTLAAAPSLDGSWEVIGELQQGGELLHLIEELPFITGKSVEQPGSLAEQVFQAQKSVF-----SSLSKSVGDSRASDRTGQLL 195
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: R1E2A0_EMIHU (PPIase cyclophilin-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2A0_EMIHU)

HSP 1 Score: 136 bits (343), Expect = 1.910e-33
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 3 
Query:  417 VTSTCLIEVRIMEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKYALVD-----AQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGD-DVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCF 989
            VT    I++R++   +  +      A RG++ F LYG  APKAVE F  +   D     + S+ PSY +     + PGVIL+GG+I GL      G ++ EYG  ++    ++E + L H+RRGL+TR   + GPEFGITLG AP L+    V G L +    +L  +E +P ITG S +E GS+ADN+F AQK  F
Sbjct:   67 VTDRGFIDLRVIRSFDVDSGVLEDAAVRGRVQFELYGNDAPKAVERFKGFVKGDIGQFRSSSDGPSYRTGAFTTLRPGVILQGGRINGLRLTEFAGAQQYEYGSRLVPLDGVVEVNELKHDRRGLITRRQFSAGPEFGITLGPAPQLDSGWEVIGRLSQDSAGLLPLIEGLPYITGRSLEEPGSVADNVFNAQKSLF 263
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A7S0MM22_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MM22_9CRYP)

HSP 1 Score: 129 bits (323), Expect = 4.510e-31
Identity = 76/194 (39.18%), Postives = 112/194 (57.73%), Query Frame = 3 
Query:  414 VVTSTCLIEVRIMEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKYALVDAQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEEL-EYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCFF 992
            VVT +  +E+RI++  + S+     +A RG+++ GLYGK APK V +FL++         PSY S        G  LEGG+I GL    + G   + ++ G+ +    +LE+S L H RR LL+      GPEF +TLG AP L+   +VFG +L G +++  + E+P +TG S   EGS+ADNI+RAQ   FF
Sbjct:    8 VVTQSAFLELRIIQ--DYSSQVLEDSAVRGRLVIGLYGKDAPKTVGHFLRFVRPREDGSGPSYGSGLFYSNQEGRYLEGGRINGLFPTEVPGVGRVYQWLGQAVGLEPVLEASPLRHGRRWLLSHNRFNPGPEFAVTLGPAPELDAGWTVFGEVLSGGELIDTMAELPYVTGKSLDPEGSLADNIWRAQNSYFF 199
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BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A7S0HZC1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HZC1_9CRYP)

HSP 1 Score: 129 bits (323), Expect = 5.550e-30
Identity = 67/191 (35.08%), Postives = 116/191 (60.73%), Query Frame = 3 
Query:  417 VTSTCLIEVRIMEPLNESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKYALVDAQSERPSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCF 989
            +T+   ++VRI+   + S         RG+++FGLYGK +P+ V++FLK+   +   E P+Y+S    R   G  +EGG+I GL+T  + GQE  ++ G ++    +LE++ L H+R+ LL+      GPEF ITL + P L+  ++VFG ++ G++ ++ + ++P +TG S   EGS AD+ ++AQ+  F
Sbjct:  143 ITNKVYLDVRIIR--DYSREVLEDGVLRGRIVFGLYGKQSPQTVQHFLKFVTAN-YGEGPAYSSGMFYRHEAGRWIEGGRINGLSTTQVAGQETFQWNGRVVPLAPILETNSLRHDRKFLLSHRKFNPGPEFDITLSSTPELDASNTVFGEVIAGEEYVQEIVKLPFVTGKSLDPEGSPADSWWKAQREFF 330
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Match: A0A7S3EGU8_9RHOD (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EGU8_9RHOD)

HSP 1 Score: 126 bits (317), Expect = 8.050e-30
Identity = 68/185 (36.76%), Postives = 109/185 (58.92%), Query Frame = 3 
Query:  501 GKMLFGLYGKAAPKAVENFLKYALVDAQSER-----PSYASSQMMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHNRRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVPIITGTSTQEEGSIADNIFRAQKVCFFLFCLSSLALDVMHDVR 1040
            G++ FGL+GK APK V+ FLK    +   +R     P Y +S + R +PG +++ G+I+ L T ++  +   ++ G +L +   LE + L    RGLL +     GPEF I L A P L+  +++FG +LEGDDVL ++E++P+ T  S ++EGS AD +F+AQK       ++S   +V+ D R
Sbjct:   85 GRVTFGLFGKDAPKTVQEFLKLVPGNRAGDRLEPSSPEYTNSLIYRCIPGSLVDLGRIRNLTTFVVNQEVYYDFDGSVLPAAAELEVNSLMPVSRGLLAKQRFHIGPEFSIILNANPPLDSQYTIFGKVLEGDDVLEQIEQLPVRTNRSMEQEGSFADEVFQAQKKF-----MTSFGQNVLRDKR 264
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1028.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA6_9PHAE6.630e-7550.00PPIase cyclophilin-type domain-containing protein ... [more]
D8LHC5_ECTSI9.110e-6856.94Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A7S4DA21_HETAK1.590e-4743.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CET4_9STRA2.170e-4749.72Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S0LLF5_9EUKA3.500e-3540.40Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coccol... [more]
A0A7S0JDD1_9EUKA1.070e-3341.67Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R1E2A0_EMIHU1.910e-3340.10PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S0MM22_9CRYP4.510e-3139.18Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0HZC1_9CRYP5.550e-3035.08Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3EGU8_9RHOD8.050e-3036.76Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1028contigD-mesarthrocarpus_Contig1028:6753..12418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHC5
PFAMsPro_isomerase
Model size1274
Max annot lvl2759|Eukaryota
KEGG koko:K03768
Hectar predicted targeting categorysignal peptide
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016018,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0044877,GO:0061077,GO:0071704,GO:0140096,GO:1901564
Exons6
Evalue2.51e-69
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-24_001370.1
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size1092
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1028.1.1prot_D-mesarthrocarpus_Contig1028.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1028 6767..12250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789169.2364902-UTR-D-mesarthrocarpus_Contig1028:6752..67661680789169.2364902-UTR-D-mesarthrocarpus_Contig1028:6752..6766Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1028 6753..6766 +
1680789169.3241065-UTR-D-mesarthrocarpus_Contig1028:12250..124181680789169.3241065-UTR-D-mesarthrocarpus_Contig1028:12250..12418Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1028 12251..12418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789169.2485092-CDS-D-mesarthrocarpus_Contig1028:6766..71921680789169.2485092-CDS-D-mesarthrocarpus_Contig1028:6766..7192Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1028 6767..7192 +
1680789169.2658029-CDS-D-mesarthrocarpus_Contig1028:7482..75841680789169.2658029-CDS-D-mesarthrocarpus_Contig1028:7482..7584Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1028 7483..7584 +
1680789169.2788298-CDS-D-mesarthrocarpus_Contig1028:8828..89421680789169.2788298-CDS-D-mesarthrocarpus_Contig1028:8828..8942Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1028 8829..8942 +
1680789169.288867-CDS-D-mesarthrocarpus_Contig1028:9885..99721680789169.288867-CDS-D-mesarthrocarpus_Contig1028:9885..9972Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1028 9886..9972 +
1680789169.3012094-CDS-D-mesarthrocarpus_Contig1028:11212..113471680789169.3012094-CDS-D-mesarthrocarpus_Contig1028:11212..11347Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1028 11213..11347 +
1680789169.3100717-CDS-D-mesarthrocarpus_Contig1028:12022..122501680789169.3100717-CDS-D-mesarthrocarpus_Contig1028:12022..12250Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1028 12023..12250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1028.1.1

>prot_D-mesarthrocarpus_Contig1028.1.1 ID=prot_D-mesarthrocarpus_Contig1028.1.1|Name=mRNA_D-mesarthrocarpus_Contig1028.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=364bp
MQFWKTCGIAGPMRRKCQQCALLLVMPLLVHGLSLPFRPPSTSRGSEGIG
SRSHPSSRLPAERRGFSTPLLVTGNAGAKHTEPTSWNREMQQECLSRGKF
LGIEVGAVTAALAAGTLAPRIVAAASEASSSNPVVTSTCLIEVRIMEPLN
ESNNFSSVNAYRGKMLFGLYGKAAPKAVENFLKYALVDAQSERPSYASSQ
MMRMVPGVILEGGKIKGLNTILIGGQEELEYGGEILASPLLLESSGLPHN
RRGLLTRPSLARGPEFGITLGAAPGLERDHSVFGVLLEGDDVLRRLEEVP
IITGTSTQEEGSIADNIFRAQKVCFFLFCLSSLALDVMHDVRDNTSFLLS
LPLVPALPAKASK*
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mRNA from alignment at D-mesarthrocarpus_Contig1028:6753..12418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1028.1.1 ID=mRNA_D-mesarthrocarpus_Contig1028.1.1|Name=mRNA_D-mesarthrocarpus_Contig1028.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=5666bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1028:6753..12418+ (Discosporangium mesarthrocarpum MT17_79)
TAAAATTACAACAAATGCAGTTTTGGAAGACCTGTGGGATCGCAGGTCCA
ATGCGACGAAAATGTCAGCAATGTGCGCTCTTGTTAGTTATGCCCTTGCT
TGTGCATGGGCTATCGTTGCCCTTCCGACCCCCTTCCACCTCTAGAGGTT
CTGAGGGGATTGGTTCCAGGTCGCACCCAAGCAGCCGGCTTCCCGCAGAG
AGACGAGGTTTTTCTACTCCCCTTCTTGTAACCGGTAACGCGGGAGCGAA
GCATACAGAGCCTACAAGTTGGAATCGTGAAATGCAGCAGGAATGTCTTT
CGAGGGGGAAATTTTTGGGCATCGAAGTGGGTGCAGTGACCGCGGCTCTC
GCAGCAGGAACCCTCGCGCCAAGGATAGTAGCTGCGGCGAGTGAAGCCTC
ATCATCGAATCCGGTCGTAACTTCTACGTGCTTGATCGAGGTCGGTGGGC
GTTTAATATTTTGCATATTTTTTGTGTTGGAGTCCTTGCGGGGGTGCTTG
CAAGAGTTGGATCGCCAGCTTCGTGAGTAACACATGCTCCGAACTCGCTG
AGGTGCTGCGCCACCTTTTATCCACTTAAGTGGAGGTCCAGATTGTTTAC
AGGCTAGGGACAAGGGCTTTCAATTTGTAGGTATCAATGAATGTCAATAA
GGGAACCATCAAAATGAATACATTCGCAATTTGTGCCACGAGAGTTTCCC
CGCTCGTTTTCTCTTCAAACTGATTTGCAGGTGCGTATCATGGAGCCACT
AAATGAGAGCAACAATTTCAGCAGCGTCAATGCGTACCGCGGCAAGATGC
TGTTCGGGCTGTATGGGAAGGCTGCTCCCAAGGTACTGATGCTATGATGG
ACCTAGTTTTTTTTCTTCGGTTTCGGTTTCGTTTTCGGTTCATCTTCTAA
GTTTTTGACATACGTATGGAGGCTGACCTGGAGTACGACAAAGAGACTGA
CCTGAAAGAGGCGGAATGGTAGACCCCCTTGTCCTCTTCTTCCAGAACCC
ACCGAGATTCCTGTTCCATGAAAACGATAAAGATCAATGAGGTAGGATTC
GAGCCCTTCCTGGGCAACTGTCCCTGCACTGGCAGATATTTAATTGGAGG
TGGCAAGAAAGAGAGTTGGGAGATGTTATGCTTGCCTATTCCGTCAGGTA
CTGCACACCATGTATAGCCGGGCAAGGTTAGCTGTGCAATGCAGACACCA
TCAATGTGGCCAGCAGTAGGAAGGACAGGGAAATGACATTTATCTACGGC
AAATGTTGGACATGACCCAGAAGGTGTCACAGTGGTCACACCACAGCTGT
GTTCGATTGAGCAATAGTGGCTGTGGGCTCTTGTACCAGTGGGTCCATGG
TGCTTGCATGTAAGAAGTGCAGTTCTTGCCACAGGCAGTACTGTGTATAG
TACATTGGGAGTAATTTCGGATGGGTGACTGACTTGTGCGGAACTTGAAG
TAACGCTCCGACTGTTTCACATGACAGTTACATGCATTATTCTGAAGTGT
TTTAGGGTTAGACATTTTTTATTATTATGATTATTATAATTACTATAATT
ATAATTATTATGACTACTATAATAATAATAACAATAATAATAATAATACT
TATTTTGATTATTAACATGAAACATCTACACATATACTGTGCAATATCTT
GTTGGAGCAAGTGAGTGTCAGAGTATGCAGACGTTGGTGAGATGGAAGTC
AATACTGGTGAACAGGAGGTTTGTTAAACCTCAGAGTTGATACTTAAAGT
GTCGGAGTAAGACACTCGAAGTACTGCCAACGACCAATAACACATGCAGT
CTGCATGCATACTCACGTGAAAGGAAGACGGACAATCTTCTCGTGCTCTG
ATATTCTACTGCAGTCCTGTAGTGTTCCAGTGTTCTAATGCTTGGATGTT
CTGTTGCGCCAATGTGCTGGCGTTATGCTGTAATGTTCTTATGTTCTCAT
GTTCTAAACTATGTATGGTGTCATTTGCTCCTTCCCATTTCCTTTTCCTG
CCCCCTGTCCCCACCCCTCACAATGCTGGCCCCGTGGCACTAATACATGT
GCTACACCCTGCACCGCCAATGCAAGGCCGTGGAAAACTTTTTAAAGTAT
GCCTTAGTGGATGCTCAGTCAGAGAGACCGTCGTACGCGTCCAGCCAAAT
GATGAGGATGGTGCCGGGAGTGATTCTGGAGGGGGGAAAGGTGACCGACC
TACCGTCGGGACCATGTTTTTTCGCCCGCACCATATATAGCTCTACTGTA
GAGCTGCTCCGTGGTGCTACAGAGCTCTGTGGCATTGCAGAGCTCTGTGG
GACTCACTTACGGTCAGGGGATCGTGCTGCTCCTTTTCCTTCTTGTGGTG
TACCTTGTTAAGGTTAGGGTCAGGGGTAGGGTGAGGGTTGAGGGTTGGGC
CTTATCCTTGTGGTGTACCTTGTTAAGGTTAGGGTCAGGGATAGGGTGAG
GGTTGAGGGTTGGGCCTTATCCTTGTGGTGTACCTTGTTAAGGTTAGGGT
TAGGGTTAGGGTCAGGGTTAGGGTTAGGGTCAGGGATAGGGTTAGGGTTA
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTTGTACTGCCCCGAAG
AGCGGCGTGCTGTGAAGGTATTAACTCTTTTTTCAGTACGGTACGCTACA
GTACAACACAGTGGTGTAGCGTACCGTACACTGTGTGGTATGCTGTACGC
TGTACAGTGCGATACGCTGTACGCTGTACCGTGTGATATACTGTCTGGTA
TACTGTATGGTACACTGTACGGTACGCTGTGATGTACTGTACGGTATACT
GTACGGTATACTGCACGGTATTCTGTGTGATAAACTGTGTGATACATTGT
ATGGAGCCCGTCTCACACTCCAATGGGTGAGAATCTCTGTGCACAGGTGA
GGACCTATGATATATCGCAATGTAGAGTATGTGGCTCTGATATCTCATCC
GATACGGTGATATATAAAGTATGGTCAATATATCATAATGTTCCGGTACA
CTGCATGATGTGCTGTGTGATGTACTGTACAGTATACTTCAGTATGTTGA
AATGACAGTGTAGCATACATAGCATACTATTCAGCACAACAGATGGCACT
ACTGGACCTGAACACCATTTCCAAACATACCAGATCAAGGGCCTGAACAC
CATTTTGATCGGGGGGCAGGAGGAGCTGGAGTATGGGGGCGAGATATTGG
CCAGTCCACTGCTGCTTGAGGTGAACCCGTTCACTCTGTGCTCGAGAGCT
TGTAGTACTGTTGGCGTGCGTTCTGTCCAAGGTGGGGGCAACACATTATT
TTTGTGATTGTAGAGGTTTTTTTCGTTGGTTTCTTTTGTTGCGGAGTTTG
ATGATATTCTTTGGTAAGGTGGAGAAATTGGAAGAGGCTCCCAGCGCCCT
AGAGCTACTGCCCTGGAGCTACTGGCCTGAAGCTAGTGACCTGGAGCTCG
TGCGCTGGAGCTAGTGCCATAGAGCTCGTGATATAGAGCTTGTGCTCTGG
AGCTAGTGCCTTGCCTGCCTGGAACAGTTCGATCTTGACATCGCCCACAG
ATAGAAAAGGGTTCCTCCATGATGCTCTCTAGCACTCTCAAGACCTATAG
TACAGTACTGTACGTCTCTTTATCCAGGTATGGTAGGGAATGCATAGCTG
GCAGTAGAGATGTGTGGGCTCTTGTGGCCTCGCTCACTCTTCGTCGTCTA
GGAAACTTCAACTCCGTGGTAACTTCAACTTCATGGTAACTTCAACTTCA
TGGTAACTTTTTTCAACTGTTACGTTGAATCCAACTCTGAGGCTAAGGTT
GAAGTTTTTTGTTCTGGCACTCAAGTGGATGGGTATGGCGCTGCGGTGGC
TGGTGTTTAAATGCACAAAGTACATTTAAAGTGGTTGAGTCTCACTTCAC
TCATTATTGTTGCTGTTTCATGCCAGCGTTGAAAATCAACTCTGAAGAAA
GGAGGCATTTTGTTCATAATTTCTATTTTGTATTCTATTTTATGGGAGGC
ATATGATCTCTGAATGAGATTTTCGTTTTTTTGGTGTTGTGGGTCACCAA
AAGATGACCCTGTTCAACTTCCCGGGGAAGATGGATCCCCTTTCTCCCCA
AATCCTTTCCCTTGCTGGAGCTGCCACTGTTACCCTGACCCGTTCCTCTC
CCCCCTGAAACACAAAATTAAGGCCATTCAGATCATGGTTTCCAGGCCTT
CCTCCCCTACATGTGCACCGTAAACCTACACCCTAACCCTAGCCCTAACC
CTTATCCTAGCCCCAAGCCTAAATCTTTGCCACTCCTTCTGTATTCCCAT
CCTGCCCGCCCATTATAGAGCTGGTGTGCCTTGGCAAACTTTAGCCTACT
ATTACTCTCCTCTCGTTCCCTTCCCCGCCCCCAACCATAACCCCAAACTC
ATGCTCCCCCTCCCCCTCCTCTTTTCCCTCCTTCTCCTCTTCCTCCTCCT
CCCCTGGCAGTCTAGTGGACTGCCTCACAACCGGAGGGGGCTCTTGACCC
GACCGTCTCTGGCGAGGGGCCCAGAGTTTGGGATCACCCTGGGGGCGGCC
CCGGGGCTAGAGAGGGACCACTCCGTCTTTGGCGTCCTTCTTGAGGTGAG
GTGGCTAAGACTTACATGAGATACGCACTTCGAAGCACTTTGCCTGATAC
TTCAGGTATACTGTACAATACTATGGTATACTGCACAGTGGTTTGGGTAT
ACTGGCACAGTACTATTGAGTACTGTATGGTGGTACTCCGATGCACATAT
CAGTGTCTGGGGCAGCCTCGATAGTTTTTTTCTACGCTGGATAACTCTGT
GGTGCTCCGGTCCCTCAAGATCAAGGTTGGGGTTGTTCCCGGATCGATGA
TGTGCGTCAGGGTTAGGGATAAGGTTAAGGTCGCTCTTGGGAGTGTGCTA
CGGTAGCACAGTGCCCCAGCCCTAACTCCTTTGAGGATTCTTTGTGAAGT
ATTGTGCTTCACAGTACACTGGTGTCGTATTCCGGATGCCTTACGGGTAT
GGTTGGTCCTGATGTGGGCAATGCCTTTGCTTTGAAGTGCTTCAAGGCAT
ACCTTACTTGCGCGTATGCTTTACATCTACATACCTACATATATACTTCG
TATATGATACCACCTTGTGGCTGGCTTTTGAGAATCGGGCCGCTGATGAC
ATCGGCACAAACAGGTGCTGACACTGCAATCCTCAACGAAAGTTGTATTT
TGACCCCATGAAGCTGTGCTCCTTGAAACTAAGAAGCCCCTTCCCCTCGC
ATTTTTTCATCTGCTCCCAGGGTGATGATGTCCTCCGGAGGCTGGAAGAG
GTGCCGATCATAACAGGAACGTCCACACAAGAGGAGGGCAGCATCGCAGA
CAACATATTCCGGGCGCAGAAGGTCTGCTTTTTCCTGTTTTGTTTGTCTT
CCTTGGCTCTTGATGTCATGCATGATGTACGAGATAACACTTCATTTCTT
CTCTCTCTCCCTTTGGTTCCTGCTCTCCCTGCGAAGGCTTCAAAGTGATT
CCCTTTTCCCTCGTTTTTTCGTATGGAGCCCTCGAGAATCGCAAGCGCGT
CTCTTAACACATGATATGCCCCATTTTGCGTACATCAGTAGTTCGAAAGT
TAGGGTTAGGATCAGGATTAGGCATGGCACTGCTGCTTTGAAGTTCAGGG
TTAGGGTTAGGCATGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1028:6753..12418+

>mRNA_D-mesarthrocarpus_Contig1028.1.1 ID=mRNA_D-mesarthrocarpus_Contig1028.1.1|Name=mRNA_D-mesarthrocarpus_Contig1028.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1092bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1028:6753..12418+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAGTTTTGGAAGACCTGTGGGATCGCAGGTCCAATGCGACGAAAATG
TCAGCAATGTGCGCTCTTGTTAGTTATGCCCTTGCTTGTGCATGGGCTAT
CGTTGCCCTTCCGACCCCCTTCCACCTCTAGAGGTTCTGAGGGGATTGGT
TCCAGGTCGCACCCAAGCAGCCGGCTTCCCGCAGAGAGACGAGGTTTTTC
TACTCCCCTTCTTGTAACCGGTAACGCGGGAGCGAAGCATACAGAGCCTA
CAAGTTGGAATCGTGAAATGCAGCAGGAATGTCTTTCGAGGGGGAAATTT
TTGGGCATCGAAGTGGGTGCAGTGACCGCGGCTCTCGCAGCAGGAACCCT
CGCGCCAAGGATAGTAGCTGCGGCGAGTGAAGCCTCATCATCGAATCCGG
TCGTAACTTCTACGTGCTTGATCGAGGTGCGTATCATGGAGCCACTAAAT
GAGAGCAACAATTTCAGCAGCGTCAATGCGTACCGCGGCAAGATGCTGTT
CGGGCTGTATGGGAAGGCTGCTCCCAAGGCCGTGGAAAACTTTTTAAAGT
ATGCCTTAGTGGATGCTCAGTCAGAGAGACCGTCGTACGCGTCCAGCCAA
ATGATGAGGATGGTGCCGGGAGTGATTCTGGAGGGGGGAAAGATCAAGGG
CCTGAACACCATTTTGATCGGGGGGCAGGAGGAGCTGGAGTATGGGGGCG
AGATATTGGCCAGTCCACTGCTGCTTGAGTCTAGTGGACTGCCTCACAAC
CGGAGGGGGCTCTTGACCCGACCGTCTCTGGCGAGGGGCCCAGAGTTTGG
GATCACCCTGGGGGCGGCCCCGGGGCTAGAGAGGGACCACTCCGTCTTTG
GCGTCCTTCTTGAGGGTGATGATGTCCTCCGGAGGCTGGAAGAGGTGCCG
ATCATAACAGGAACGTCCACACAAGAGGAGGGCAGCATCGCAGACAACAT
ATTCCGGGCGCAGAAGGTCTGCTTTTTCCTGTTTTGTTTGTCTTCCTTGG
CTCTTGATGTCATGCATGATGTACGAGATAACACTTCATTTCTTCTCTCT
CTCCCTTTGGTTCCTGCTCTCCCTGCGAAGGCTTCAAAGTGA
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