mRNA_D-mesarthrocarpus_Contig1027.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A6H5KS33_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KS33_9PHAE) HSP 1 Score: 181 bits (459), Expect = 5.810e-52 Identity = 85/119 (71.43%), Postives = 104/119 (87.39%), Query Frame = 2 Query: 200 RSSSLEFLQNFARGCKNPRMKQHSKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREIEAAIA 556
R +++ LQ ARGCKNP+ QHSKRSQ GLYAGKDI FGNTISFS+KK+RRTWKPNVQ K L+SETL++WI+F++TTHALRCV+ AGGID+YLLK PD WLNSV+G++AKR+IE A+A
Sbjct: 5 RRNTVGCLQTLARGCKNPKKPQHSKRSQIGLYAGKDIGFGNTISFSHKKNRRTWKPNVQKKALYSETLDEWIKFNLTTHALRCVDRAGGIDKYLLKTPDEWLNSVQGSKAKRKIEEALA 123
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A7S3ZX50_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZX50_9STRA) HSP 1 Score: 136 bits (343), Expect = 7.660e-35 Identity = 66/101 (65.35%), Postives = 80/101 (79.21%), Query Frame = 2 Query: 269 SKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREIEAAIAGGKPN 571
S RS+ G+YAGKDIRFGN ISFS++K+RRT+KPN Q KRLWSETL W+RF++TTHALRC++ AGGID YLLK PD L S+ G A+R IEAA A P+
Sbjct: 60 SNRSKRGIYAGKDIRFGNNISFSHRKTRRTFKPNAQRKRLWSETLGCWLRFNLTTHALRCIDRAGGIDAYLLKTPDAKLGSIAGANARRMIEAARASRDPS 160
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A7S2C450_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C450_9STRA) HSP 1 Score: 122 bits (306), Expect = 9.530e-30 Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 2 Query: 269 SKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREIEAAIA 556
S R+ GLY GKD+ FGN +S S +K+RR WKPNVQ KRLWSE+L W++F+VTT A+RCV+ AGG+D YLL + D + S++G AKR IEAA+A
Sbjct: 42 SGRAARGLYGGKDVGFGNMVSHSERKTRRMWKPNVQKKRLWSESLGDWVKFNVTTQAMRCVDKAGGLDNYLLGLKDGKIGSIQGLAAKRRIEAALA 137
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A7S2RZD4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZD4_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.980e-28 Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 269 SKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREIE 544
S R+ GL+ KDIRFGN +S S +K+RR+WKPN Q KRLWSETLE++++F TT+ L+C++ GG+D YLL+ PD+ LNS+ G AKR IE
Sbjct: 18 SGRALRGLFGNKDIRFGNKVSHSERKTRRSWKPNAQNKRLWSETLEEFLKFKTTTYVLKCIDKVGGLDNYLLRTPDKKLNSITGLAAKRRIE 109
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A7S2HHC9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHC9_9STRA) HSP 1 Score: 116 bits (290), Expect = 8.670e-28 Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 2 Query: 269 SKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREI 541
S R+ GL+ GKD+RFGN +S S +K+RR WKPNVQ K+LWSETL+ ++RF++T HA+RCV+ AGG+D YLL +PD+ L S +G AK +I
Sbjct: 16 SGRALRGLFGGKDVRFGNKVSHSERKTRRMWKPNVQRKKLWSETLQDYLRFNMTVHAMRCVDKAGGVDNYLLAIPDKDLKSDQGLAAKCKI 106
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A7S3K4M7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4M7_9STRA) HSP 1 Score: 114 bits (285), Expect = 8.280e-27 Identity = 51/94 (54.26%), Postives = 72/94 (76.60%), Query Frame = 2 Query: 257 MKQH-SKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKR 535
+K+H S R++ GLY KD+R GN++SFS +K+RR WKPNVQ K+ WS+ L W+RF VTTHA++C++ GGID+Y+L+ P+ LNS+ G AKR
Sbjct: 32 VKRHGSNRAKRGLYHLKDVRSGNSVSFSERKTRRKWKPNVQTKKFWSQILCCWLRFKVTTHAIKCIDKKGGIDKYILETPESKLNSIAGNNAKR 125
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A7S2V663_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V663_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.150e-26 Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 2 Query: 197 ARSSSLEFLQNFARGCKNPRMKQHSKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDR---WLNSVEGTRAKREIEAAI 553
+R S FL NF RG S R+ GLYAGKDIRFGN++S SN+K+RR++KPNV KRLWS+ L++WI F V+ HALRC+++AGG+D Y+L+ + W +S + RA++E+ A+
Sbjct: 5 SRHVSFSFLSNFIRG---------SGRASRGLYAGKDIRFGNSVSHSNRKTRRSFKPNVFNKRLWSDILDRWIPFKVSAHALRCIDHAGGLDNYILRNSLKTGDW-DSTQAVRARKEMLEAL 116
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A835YSL8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL8_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.080e-24 Identity = 60/118 (50.85%), Postives = 74/118 (62.71%), Query Frame = 2 Query: 200 RSSSLEFLQNFARGCKNPRMKQHSKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREIEAAI 553
R S+++FL+ F R P + +S RSQ G+YAGKD+RFGN FS KKSRR W PNVQ KRLWSE L + I VTT ALR V+ AGG+D YLL D L S + + + AI
Sbjct: 6 RQSAVKFLEGFTRASSKPNL--YSNRSQRGMYAGKDVRFGNKTCFSAKKSRRKWLPNVQSKRLWSELLREHIPLKVTTAALRGVDKAGGLDNYLLYTTDDRLRSSQVSAINGRVVEAI 121
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: I2CRI6_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRI6_NANGC) HSP 1 Score: 105 bits (263), Expect = 1.480e-23 Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 2 Query: 269 SKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREIE 544
S R++ GLYAGKD+ FGN +S SN+K+RR +KPN KRLWS+TL+ I F++TT LR V+ GG+D YLL+ PD L+S G + KR IE
Sbjct: 25 SNRARRGLYAGKDVLFGNKVSHSNRKTRRMFKPNAHHKRLWSDTLQDMIPFYLTTTTLRMVDKVGGLDNYLLQTPDHKLDSESGIKVKRRIE 116
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Match: A0A662WLH2_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLH2_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.720e-23 Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = 2 Query: 203 SSSLEFLQNFARGCKNPRMKQHSKRSQTGLYAGKDIRFGNTISFSNKKSRRTWKPNVQLKRLWSETLEKWIRFHVTTHALRCVENAGGIDRYLLKMPDRWLNSVEGTRAKREIEAAIA 556
SSS+ FL+ F R K + S R+Q GL+AG+D RFGN +SFS +++RR WK N Q K L+SE L++ + +VTTH LRCV+ GG+D YLL + D V+G + + + A+A
Sbjct: 4 SSSMRFLEAFTRAAKREHV---SGRAQRGLFAGRDKRFGNNVSFSKRRTRRAWKVNHQWKTLYSEALDEKVGLNVTTHTLRCVDKIGGLDNYLLSIKDEAELGVKGLKTRDRVREALA 118 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1027.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1027.3.1 >prot_D-mesarthrocarpus_Contig1027.3.1 ID=prot_D-mesarthrocarpus_Contig1027.3.1|Name=mRNA_D-mesarthrocarpus_Contig1027.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=170bp MWARSSSLEFLQNFARGCKNPRMKQHSKRSQTGLYAGKDIRFGNTISFSNback to top mRNA from alignment at D-mesarthrocarpus_Contig1027:5694..8526- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1027.3.1 ID=mRNA_D-mesarthrocarpus_Contig1027.3.1|Name=mRNA_D-mesarthrocarpus_Contig1027.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2833bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:5694..8526- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1027:5694..8526- >mRNA_D-mesarthrocarpus_Contig1027.3.1 ID=mRNA_D-mesarthrocarpus_Contig1027.3.1|Name=mRNA_D-mesarthrocarpus_Contig1027.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=510bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:5694..8526- (Discosporangium mesarthrocarpum MT17_79)back to top |