Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10265.2.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.050e-10 Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 1 Query: 22 WQGTRGDAFEIAKTVLKRCQEDPVLSEALPDALELLTHATIEALSLAEQRA 174
W GT DAFEIA VLKRC+ED VL EALPD LELL A +E LS+A RA
Sbjct: 149 WHGTSSDAFEIAVAVLKRCREDSVLVEALPDTLELLLRACMEGLSIAGARA 199
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 347 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 345 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789167.9225595-CDS-D-mesarthrocarpus_Contig10265:1281..1554 | 1680789167.9225595-CDS-D-mesarthrocarpus_Contig10265:1281..1554 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig10265 1282..1554 - |
| 1680789167.9328783-CDS-D-mesarthrocarpus_Contig10265:1837..1909 | 1680789167.9328783-CDS-D-mesarthrocarpus_Contig10265:1837..1909 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig10265 1838..1909 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10265.2.1 >prot_D-mesarthrocarpus_Contig10265.2.1 ID=prot_D-mesarthrocarpus_Contig10265.2.1|Name=mRNA_D-mesarthrocarpus_Contig10265.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=115bp
SAEDGCTWQGTRGDAFEIAKTVLKRCQEDPVLSEALPDALELLTHATIEA
LSLAEQRAVAKVPVPVSGPAPRATSHSRPRRDRGTGEDGGVVVVEEKEEE
AERRGCSPAASCGEW back to topmRNA from alignment at D-mesarthrocarpus_Contig10265:1281..1909- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig10265.2.1 ID=mRNA_D-mesarthrocarpus_Contig10265.2.1|Name=mRNA_D-mesarthrocarpus_Contig10265.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=629bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10265:1281..1909- (Discosporangium mesarthrocarpum MT17_79)
TCAGCAGAGGACGGCTGTACTTGGCAGGGGACCAGGGGCGATGCCTTTGA
GATAGCCAAGACCGTTCTCAAGGTAGGTGGGGAGGGAGTTCTTCATTGCG
GGGGGTTTAGGGATGGGTTTGAAGGGAGGGAGGGAGAGAACTGCCGGTGT
TGGTGTTGGTCGTTGGTCACCGAGTAACAATTCATTAAAAAAAAAAAATA
TGTGACAGACCCTGACCCCATCCCTGACCATGGTCTTGACCATAGACGAC
ATGTTTACCCTGTACCCATAACCGACACCATCGCCCTTCGACTGAAGCAT
CGGAATAACCCCACGGCATCAAGGTACCAACGTCGTTTGCACGCATGCCG
AGCAGCGCTGCCAGGAGGACCCGGTGCTCTCTGAGGCCCTCCCGGACGCC
TTGGAGCTGCTGACCCATGCCACCATCGAGGCTCTCAGCCTGGCCGAGCA
GCGAGCAGTGGCAAAGGTACCTGTGCCCGTGTCCGGACCTGCACCAAGGG
CCACATCTCATTCGAGACCAAGGAGAGATCGAGGAACAGGGGAAGATGGG
GGCGTGGTGGTGGTGGAGGAGAAGGAGGAGGAGGCAGAGAGGAGAGGCTG
CAGCCCTGCAGCGTCCTGTGGGGAGTGGG back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10265:1281..1909- >mRNA_D-mesarthrocarpus_Contig10265.2.1 ID=mRNA_D-mesarthrocarpus_Contig10265.2.1|Name=mRNA_D-mesarthrocarpus_Contig10265.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=345bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10265:1281..1909- (Discosporangium mesarthrocarpum MT17_79)
TCAGCAGAGGACGGCTGTACTTGGCAGGGGACCAGGGGCGATGCCTTTGA
GATAGCCAAGACCGTTCTCAAGCGCTGCCAGGAGGACCCGGTGCTCTCTG
AGGCCCTCCCGGACGCCTTGGAGCTGCTGACCCATGCCACCATCGAGGCT
CTCAGCCTGGCCGAGCAGCGAGCAGTGGCAAAGGTACCTGTGCCCGTGTC
CGGACCTGCACCAAGGGCCACATCTCATTCGAGACCAAGGAGAGATCGAG
GAACAGGGGAAGATGGGGGCGTGGTGGTGGTGGAGGAGAAGGAGGAGGAG
GCAGAGAGGAGAGGCTGCAGCCCTGCAGCGTCCTGTGGGGAGTGG back to top
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