mRNA_D-mesarthrocarpus_Contig10265.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10265.1.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE) HSP 1 Score: 108 bits (271), Expect = 6.170e-24 Identity = 69/167 (41.32%), Postives = 85/167 (50.90%), Query Frame = 2 Query: 17 SELGVAQAIMADCLCLVQLVPDCFYEVIARVARKMEPERYSLLFPLHPLPAA-----------------------------------LCGPGAGGTGVGDDGPATTSEDNDDGEGGNEVGGVSGSPLPMVVHPTHLFHMCLQGGRLTTAAWYLPLVRDDMAHEAALR 412
SEL +A+A+M+D + L QL P+CF+EV+ARVARK EPERY LLFPLH + A + G AG GVG +VG G VHPTHLFH C+ G+LTTAAWYLPL+RDD+A +AA R
Sbjct: 233 SELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVCGAPDAEEEETEKVSSXXXXXXXXXXXXXXXRARSVEAVNGERAGAGGVG------------------QVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAFDAAQR 381
BLAST of mRNA_D-mesarthrocarpus_Contig10265.1.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI) HSP 1 Score: 107 bits (266), Expect = 3.210e-23 Identity = 70/152 (46.05%), Postives = 89/152 (58.55%), Query Frame = 2 Query: 20 ELGVAQAIMADCLCLVQLVPDCFYEVIARVARKMEPERYSLLFPLHPLPAALCGPGAGGT-----GVGDDGPA-----------TTSEDNDDGE-----GGNEVGGVSGSPLPMVVHPTHLFHMCLQGGRLTTAAWYLPLVRDDMAHEAALR 412
+L +A+A+M+D + L QL P+CF+EV+ARVARK EPERY LLFPLH + A P A VG SE+ +GE G +VG G VHPTHLFH C+ G+LTTAAWYLPL+RDD+A++AA R
Sbjct: 2082 KLELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGA---PDAEEETEKFFSVGXXXXXXXXXXXXXXXRAQSEEAVNGERARAGGVGQVGRCVGPRWGRWVHPTHLFHECVSSGKLTTAAWYLPLIRDDVAYDAAQR 2230 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10265.1.1 >prot_D-mesarthrocarpus_Contig10265.1.1 ID=prot_D-mesarthrocarpus_Contig10265.1.1|Name=mRNA_D-mesarthrocarpus_Contig10265.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=156bp MADCLCLVQLVPDCFYEVIARVARKMEPERYSLLFPLHPLPAALCGPGAGback to top mRNA from alignment at D-mesarthrocarpus_Contig10265:185..1243- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10265.1.1 ID=mRNA_D-mesarthrocarpus_Contig10265.1.1|Name=mRNA_D-mesarthrocarpus_Contig10265.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1059bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10265:185..1243- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10265:185..1243- >mRNA_D-mesarthrocarpus_Contig10265.1.1 ID=mRNA_D-mesarthrocarpus_Contig10265.1.1|Name=mRNA_D-mesarthrocarpus_Contig10265.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=468bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10265:185..1243- (Discosporangium mesarthrocarpum MT17_79)back to top |