mRNA_D-mesarthrocarpus_Contig10258.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 119 bits (298), Expect = 7.160e-28 Identity = 70/175 (40.00%), Postives = 103/175 (58.86%), Query Frame = 1 Query: 1 CLPCLLSKSAQVTHLKVGSSKEYGI---LGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT----LTRRPQK 504 C C ++KS+Q H K+ + GI L VS L GP + S++ Y+ F++ ATR+K VYF+++K +L ++++ IP GLRVQ LHSDNGGE R + + GI QRFSSP+TP+Q+ IS+R G I M RC + ++ L +LW ++ AT + R P K Sbjct: 272 CGTCKINKSSQQNHPKIANMD--GITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHK 444
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.650e-20 Identity = 63/173 (36.42%), Postives = 90/173 (52.02%), Query Frame = 1 Query: 1 CLPCLLSKSAQVTHLK-VGSSKEYGILGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT----LTRRPQK 504 C C ++K Q H K V S L VS L GP + ++ Y+ F++ TR+ VYF++ K +F + IP+GLR+Q LHSDN E A R + + G Q F+SP+TP+Q+ IS+R G I MTRC L ++ L LW ++ AT + R P K Sbjct: 206 CDTCHVNKCVQNNHPKTVISDNITQPLQVVSTDLIGPISLPALGGYSYISKFNDYITRLNAVYFIAYKDEALLPFVNFTQDVAIPSGLRIQRLHSDNRKEYVNSAFRNYCKTTGAVQTFTSPHTPQQNGISERDGRTILNMTRCILNEARLPKILWGEIAATSVFLINRLPHK 378
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A1W7R6G9_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6G9_AEDAL) HSP 1 Score: 76.6 bits (187), Expect = 5.180e-13 Identity = 44/163 (26.99%), Postives = 77/163 (47.24%), Query Frame = 1 Query: 1 CLPCLLSKSAQVTHLKVGSSKEYGILGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYATLT 489 C CL K A++ K K L + + GP + RY + + +R VYF+ +K + +++++ G +++ SD GGE +AL + GITQ+F++ YTP+Q+ +S+R + M RC ++D+ L W + T T Sbjct: 159 CECCLEGKMARLPFPKRSRKKSKQPLDIIHTDVCGPMQTPTPGGCRYFLTMIDDHSRYTVVYFLKKKSEVTERIQEYVQYVKNLFGRAPKVIRSDQGGEYQNEALDRYCRQEGITQQFTTAYTPQQNGVSERKNRSLVEMARCMILDAQLPNKYWAEAVNTAT 321
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A699GUE9_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GUE9_TANCI) HSP 1 Score: 74.7 bits (182), Expect = 2.420e-12 Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 1 Query: 97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483 L GP T S++ +Y +++ +R +VYF+ +K T+ F+K ++V+ L +DNG E L F GI+Q FSS YTP Q+ +++R + R L+ S + WTD+ AT Sbjct: 876 LFGPVTPRSINHEKYTLVIADEYSRYTWVYFLKKKSQAHETIMSFIKRVENQNDIKVKQLRTDNGTELKNSTLVNFCDEKGISQNFSSLYTPEQNGVAERKNKTLIEAARTMLLGSVFSKQYWTDVVAT 1004
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A6L2MCU6_TANCI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MCU6_TANCI) HSP 1 Score: 72.0 bits (175), Expect = 2.100e-11 Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 1 Query: 91 IYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483 +YL P T+ S++ +Y ++ ++ +VYF+ +K +T+ F+K ++V+ L +DNG E L F GI+Q FSSPYTP Q+ +++R + R L S + WT+ AT Sbjct: 554 MYLFRPVTSRSINHEKYTIFIVDEYSKYTWVYFLKKKSQAPKTITSFIKRVENQNDIKVRQLKTDNGTEFRNIILVNFYDEKGISQNFSSPYTPEQNGVAERKNRTLIEAVRTMLSGSFFSKQCWTEAVAT 684
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A2U1M207_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1M207_ARTAN) HSP 1 Score: 70.1 bits (170), Expect = 1.010e-10 Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 1 Query: 97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483 L GP + S+ +Y ++ +R +VYF+S+K T+ F++ ++V+ + +DNG E L F GI+Q FSSPYTP Q+ +++R + R L S L+ + WT+ T Sbjct: 1084 LFGPVSPMSIHHEKYTLVIVDEYSRYTWVYFLSKKSQAADTIMSFVRNIENQNDVKVKQIRTDNGTEFKNQDLECFCDEKGISQNFSSPYTPEQNGVAERKNRTLIEAARTMLNGSVLSKHFWTEAVKT 1212
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A2U1NG18_ARTAN (Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1NG18_ARTAN) HSP 1 Score: 68.6 bits (166), Expect = 3.350e-10 Identity = 37/129 (28.68%), Postives = 65/129 (50.39%), Query Frame = 1 Query: 97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483 L GP + S+ +Y ++ +R +VYF+++K T+ F++ ++V+ + +DNG + L F GI+Q FSSPYTP Q+ +++R + R L S L+ + WT+ T Sbjct: 908 LFGPVSPMSIHHEKYTLVIVDEYSRYTWVYFLTKKSQAAETIMSFVRNIENQNDIKVKQIRTDNGTKFKNQDLECFCDEKGISQNFSSPYTPEQNGVAERKNRTLIEAARTMLNGSVLSKHFWTEAVKT 1036
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A2U1KSR6_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KSR6_ARTAN) HSP 1 Score: 67.0 bits (162), Expect = 1.160e-9 Identity = 37/129 (28.68%), Postives = 64/129 (49.61%), Query Frame = 1 Query: 97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483 L GP + S+ +Y ++ +R +VYF+++K T+ F++ ++V+ + +DNG E L GI+Q FSSPYTP Q+ +++R + R L S L+ + WT+ T Sbjct: 1070 LFGPVSPMSIHHEKYTLVIVDEYSRYTWVYFLTKKSQAAETIMSFVRNIENQNDIKVKQIRTDNGTEFKNQDLEYLCDEKGISQNFSSPYTPEQNGVAERKNRTLIEAARTMLNGSVLSKHFWTEAVKT 1198
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A0D3CKP1_BRAOL (Integrase catalytic domain-containing protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3CKP1_BRAOL) HSP 1 Score: 65.1 bits (157), Expect = 5.250e-9 Identity = 34/129 (26.36%), Postives = 65/129 (50.39%), Query Frame = 1 Query: 109 FTASSMSRA--RYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYATLT 489 +TA +SR +Y +F ++ ++ ++ + K +F + +++++L SDNGGE A + +ASHGI Q+ S PYTP+Q+ +++R + + R + + + W D T T Sbjct: 560 WTAPCVSREQHKYFVTFIDEKSKYTWITLLQSKDRVLEAFKNFQNYITNHFNVKIKILRSDNGGEYTSTAFKQHLASHGIIQQTSCPYTPQQNGVAERKNRHLMEVARSMMFHTNVPKRFWGDAVVTAT 688
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A8J5ZBL5_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZBL5_9ROSI) HSP 1 Score: 64.7 bits (156), Expect = 7.030e-9 Identity = 46/160 (28.75%), Postives = 75/160 (46.88%), Query Frame = 1 Query: 1 CLPCLLSKSAQVTHLKVGSSKEYGILGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYA 480 C+ C L K ++ K S+ +L V + GP +S + RY +F++ TR +VYF+ +K F K G+ +Q L +D GGE L+ ++ HGITQRF+ PYT Q+ + +R +I L + + W D ++ Sbjct: 389 CVACHLGKEHRLPFSKSVSAYS-ALLQLVVADVWGPAPVTS-NGFRYYVAFTDAYTRYTWVYFLHRKSEVLTIFPQFHKQAERVLGVSLQTLQTDGGGEF--QVLKQYLTQHGITQRFTCPYTSAQNGLVERKHRQIVETGLSMLAHASMPITYWNDAFS 544 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10258.1.1 >prot_D-mesarthrocarpus_Contig10258.1.1 ID=prot_D-mesarthrocarpus_Contig10258.1.1|Name=mRNA_D-mesarthrocarpus_Contig10258.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=181bp CLPCLLSKSAQVTHLKVGSSKEYGILGPVSIYLQGPFTASSMSRARYVCSback to top mRNA from alignment at D-mesarthrocarpus_Contig10258:2054..2596+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10258.1.1 ID=mRNA_D-mesarthrocarpus_Contig10258.1.1|Name=mRNA_D-mesarthrocarpus_Contig10258.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=543bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10258:2054..2596+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10258:2054..2596+ >mRNA_D-mesarthrocarpus_Contig10258.1.1 ID=mRNA_D-mesarthrocarpus_Contig10258.1.1|Name=mRNA_D-mesarthrocarpus_Contig10258.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=543bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10258:2054..2596+ (Discosporangium mesarthrocarpum MT17_79)back to top |