Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1025.6.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.020e-34 Identity = 90/279 (32.26%), Postives = 140/279 (50.18%), Query Frame = 2 Query: 323 LLQWCRREGCEGAWVANNCHNGLKKGKICLVDHQLSKKGDDIKFIARKQVLSGWVTWD-------------------FLKHIKGPYSVVTVVHNPLVRYVQNLQLAYQEETANISFATIIVSQIMDLDTNDPIEIYTKVAGMLWRLVSRASLRAIEVPREKDMELAVAEAKTHLDTYWFIGLRENPLAAVAVMRKLLDPEDRHSNLWDSMEGKAKVGMSKFNFPVRTSDLIDSIEPDVMSKFNDTLRYEWAVYEHGIGVFLRRCREILPATRHKELCVV 1102
+ W EG A VA H LK+ K+CL++++L +FIAR++VL+G W F + P+ +VT + NPL +V Q + TA +S A +V + M P T+ G L RLV R+ + E+ RE A E +L T+W +G+ E VAV+R LLDP+ H +LW + K+ S PV++S+++ S++P ++ +FN TL Y+W +Y H + +F RC+E+LP +H E C V
Sbjct: 80 MCDWANSEGLPCATVAGCGHLSLKERKVCLLNYKLIFPEQQGEFIARQKVLAGHFRWGESRVTSACHTVTRTLFASGFQVYAAEPHWLVTTLRNPLELFVSGEQYLNRATTATLSKAVQVVERAMRKSLETP----TQPPGYLHRLVGRSVVTNAEI-RE-----ATVEGARNLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNAS----PVQSSNVLASLDPQLVKQFNSTLSYQWLMYGHAVRLFRARCQEVLPEYQHWEFCSV 344
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D8LIP4 |
| Preferred name | TMEM256 |
| PFAMs | DUF423 |
| Model size | 1731 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Evalue | 6.79e-29 |
| EggNOG OGs | COG2363@1|root,KOG3472@2759|Eukaryota |
| Description | Protein of unknown function (DUF423) |
| Cds size | 1020 |
| COG category | J |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789167.0501442-UTR-D-mesarthrocarpus_Contig1025:12243..12337 | 1680789167.0501442-UTR-D-mesarthrocarpus_Contig1025:12243..12337 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig1025 12244..12337 + |
| 1680789167.0951087-UTR-D-mesarthrocarpus_Contig1025:16128..16745 | 1680789167.0951087-UTR-D-mesarthrocarpus_Contig1025:16128..16745 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig1025 16129..16745 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789167.0633366-CDS-D-mesarthrocarpus_Contig1025:12337..12640 | 1680789167.0633366-CDS-D-mesarthrocarpus_Contig1025:12337..12640 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig1025 12338..12640 + |
| 1680789167.0761964-CDS-D-mesarthrocarpus_Contig1025:13758..13855 | 1680789167.0761964-CDS-D-mesarthrocarpus_Contig1025:13758..13855 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig1025 13759..13855 + |
| 1680789167.08537-CDS-D-mesarthrocarpus_Contig1025:15508..16128 | 1680789167.08537-CDS-D-mesarthrocarpus_Contig1025:15508..16128 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig1025 15509..16128 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1025.6.1 >prot_D-mesarthrocarpus_Contig1025.6.1 ID=prot_D-mesarthrocarpus_Contig1025.6.1|Name=mRNA_D-mesarthrocarpus_Contig1025.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=340bp
MGAGEAWRMPVKTGMMVMVQMAFALFVVAQFVHDATEEHLVASPSSHGMG
ARRLGTPDGKKLIFQQLSLNLPMGKDLLQWCRREGCEGAWVANNCHNGLK
KGKICLVDHQLSKKGDDIKFIARKQVLSGWVTWDFLKHIKGPYSVVTVVH
NPLVRYVQNLQLAYQEETANISFATIIVSQIMDLDTNDPIEIYTKVAGML
WRLVSRASLRAIEVPREKDMELAVAEAKTHLDTYWFIGLRENPLAAVAVM
RKLLDPEDRHSNLWDSMEGKAKVGMSKFNFPVRTSDLIDSIEPDVMSKFN
DTLRYEWAVYEHGIGVFLRRCREILPATRHKELCVVPLS* back to topmRNA from alignment at D-mesarthrocarpus_Contig1025:12244..16745+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig1025.6.1 ID=mRNA_D-mesarthrocarpus_Contig1025.6.1|Name=mRNA_D-mesarthrocarpus_Contig1025.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4502bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1025:12244..16745+ (Discosporangium mesarthrocarpum MT17_79)
TTCAGAGGTAAGACGAGGAGGCCAACCACAATATGCACACACTTTATTCT
GTCCCTAAGGGATCGCCATCCCACAACCTCCAAGCGACAGCACCATGGGG
GCAGGTGAAGCTTGGCGTATGCCTGTCAAGACGGGAATGATGGTAATGGT
ACAGATGGCGTTCGCCTTATTCGTCGTCGCGCAATTCGTCCATGATGCGA
CAGAGGAACACCTGGTGGCTTCTCCCTCTTCACATGGAATGGGAGCGAGA
AGACTCGGCACACCTGATGGCAAGAAGCTAATCTTCCAGCAATTGTCTCT
GAACCTGCCCATGGGAAAAGATCTTCTACAGTGGTGTCGGAGGGAGGGAT
GTGAGGGTGCTTGGGTGGCGAACAATTGCCACAATGGTTTGAAAAAGGTG
AGCAAGATCGTTGTTTACAAGTAGTCCTTGAAGCTGCCCTTCCTCCGAGT
CAGCCGCTGTCCTATGTTTGGCAACGGTGGCTTCCGCAAGGCTTTCCTCG
AGCTGCAAGTGAAAGGTCTCAGCAAACAAACTTTTGCTTTAGAACAGCAG
GATAATGTTGAGGGGCTTGAGGCACCCCTCTCCTCAAGCTCATCCAACGG
TAGCGTTTTTTTACGATTTGGTGAGGCAATTGTGTCCTCGTGGTGGATCT
TCAGCCTGATGACTCCACCTCCGATAATCCCAAGAAATATTTAGGGAATG
TTTCGAAGATGGACGTTTGGAGGGATGGTAAGGGCCGTCAAAGGACGAAA
CCCTAGACCTAAACGTAACCCTCAAACCATGGTTAGACGTAGTGACAAAT
TCGTGCACTGTGTCAAGATAAATTTACTATATCCGCAAAGTAGATAGGAG
GGTAGGGCGATGGAGAGACAGTATTCCGAAAGACATCCCCAAGTGTGGAA
CCCTGTTTGGGTTCCATTTGCCACAACTGTCGGCTTAGGGACAAGTTGTA
CAGGAGACACAGTTCAGTATTGGGGACATAAATCGGGATTGTCGCGTCCG
AAACGTCCATGGACCGCAGAATCACCTGTAAGAGGGATACAACTAAAGTT
AATGTCATGTTGGAAACACGGACTTAAAATTAACGGGAAATTGAACAAGC
ACGCGAAAGTCTGTTGTACGTATTGCCAATGAGGAAATGAGTAATGGGAA
TGAAAGCGAGGGAGGGTGGTATGAGAAATGTCCGAAATAGAAAGAGTACA
GAAATGGGTGCTAGGCAGGGACAACCGGGTAGGGTAGGTGGGTGACTGAA
GCCACAAGATTCACGTAGGAGATGTAGACGTGCAGGAACAAAAAATGCAG
GAGCAGGAACATTATCAGTACAGCAATTCCATTTAACTGAGACCTGCAAC
AAGATGTAGTATACCATACTATGCAGTGATTCAAATGTACAAATCTGTGC
TAGTAAACTGTGGAACACTCTACTCTGATAATAAATACCACCTACCAGTA
TTAATATTGATTGATTGTTTTTCTTGTTTGTTTCATCATCGATCATTGAT
ATTCTATGGAAACAGGGGAAAATTTGCCTTGTGGACCACCAGCTCAGCAA
GAAGGGGGATGACATAAAGTTTATAGCACGGAAACAAGTCCTCTCCGGAT
GGGTCACATGGGGTAAGAACAAGCTCCTCTACTGACTCTAGGTGACGATA
AGGCATATACACCGCAGTGCCACCCGTCCGCCCCCCCTTCTCAGACCATT
GAAGCTGATTTCGATCAAGGGTCATTCACAAGAGTTTCAGTCAAGGCCTT
GGGGATCAAACCGTGGTTATTTTTCACCGATTTATGCTTCCACCTTGTGT
CGTACGACAACCTTGGACCAGAGTTGCTGCACAATTTGCCCGTGGTGCAT
GTCGTGTCACCAGCCCCGGGTAGTTTTTTTACACTGGCTCTCTTTTAGAA
GCAGAACGAAACACCACATCCCCAGCCGTGTGCATAGATAGAGGGCAGGC
ATAACGGATGGGTTGGGAGGCAGTGTTCACAGCGTCGTTGTGCCTTGTGT
GGGGGAGGCTCAATCGCTTGGTAGGTAGTATCTCTGGAGAGGGAGGAGAC
ATGAAGAGATGAAGGATTCGAGGGTCAGTTTCTATGTCGGTCACTGGGCA
GGTGGGGAGGTGGGGTCCCTTACGGTTTTGACACAGCAGGGGATGTATAG
CCCAAAAGGGCAAGCCCAGTGGCCCTATGACCCACCTTCTCTCTCTCTCT
ATCTCTCTCTCTCTCCCTCTCTCTCGCTGTGCTGGGTCTGTTACCGGGTA
CGTCTGAGATTGTGTGTGGTTAAGCGTGTGCCCTTCCTGTGGGGCAGCAA
GCGTGTGTGTGAGTGCGAGGGAGCAATCAGCTTGTCATCACCGATTTTCC
AGGAGAGAACCGGTGTCGGTTCAGAAGGTGGCACACAAAGCCGCATGTAG
TGAGAGAGTCGCTGAACCCCACAGGCCTAATCCTCCCAAGCGCCTCACGC
CATGTTTGAATTACATGTTCTAGACGAGTGCCCCTGAGTCTGGCCAGGTG
AGGGTGCACCCCCGCCACCAAATGCCCTTGAATCAGGTCTATTCCTCGAC
CTTGAAGCTCTGGTAACGCTGAACACCTCAAACACCCCAAACACCTTCCT
GCGGTAGAGTAAGGTATTTTCCGGAAGTCAGGTGGGATTTGTTTCTCTCC
CTTACCCCTCCTGTGGGGGCATTTGACACTGCGCTTATTGTCCCTATGTC
AATGAATGAAGCATTGCCGTCAAACCTATTTTGTTTGCTGCGACCGCAAA
CGTTTTTTCTCTGATGCTTCCACTGGCATCACAGGGTCAGTAACCATTTG
GATACACTTCTGGAAATTGTGAGGGTCACCCTTTTTTTGTTTCCCGTTTT
TCCCTCTCCGCTTGCTTTAGTTGGCAACTTGGGGGGAGCAAAGAATCAGT
GAGATTGGTTCGTTTGCAAACTTGTAGGGTTGAGAGTGGTCCCAATTAAA
AAGTATGCAGCTGGCTCAGTGCTGGTAACAACTTGACAAGTAGTCTGAAA
AAGAGACCAAGGGTTTGCCACGATTGCAATGAGTGCAGCACCCGGATTGA
CTCCTGGATCTAGGAAATGCCGAGGCCTAATTAAATACTGTGTGGATAAT
TTATTTAGTTTGGGCGAGCAGGCATGGCGTCTGTCTTCATAATTATCTCT
GTCCTGAACACCTCGTACATTCCTCTCACAAATCTGAAGAGCAAACCGTA
CCTTCCCCGCCACTCTTGCATTTGTGTGTTTTTGTCGCTTCTGAAAAACG
CGCGCGCTCCGAAAGACTTTCTGAAGCATATAAAGGGGCCATACTCGGTG
GTAACCGTGGTCCACAACCCCCTCGTGAGGTACGTGCAAAATCTACAGCT
GGCGTACCAGGAGGAGACCGCGAACATATCCTTCGCGACCATTATTGTCT
CGCAGATCATGGACCTGGACACGAATGACCCCATAGAGATCTACACGAAG
GTCGCAGGGATGTTGTGGAGGCTGGTCAGCAGGGCATCTCTTCGGGCCAT
CGAGGTACCAAGAGAAAAAGACATGGAATTGGCGGTGGCTGAGGCCAAGA
CACACCTGGACACCTACTGGTTTATCGGGCTAAGGGAGAACCCCCTCGCG
GCAGTCGCCGTCATGAGGAAGCTCCTGGATCCCGAGGACCGCCACAGCAA
CTTGTGGGACTCGATGGAGGGGAAGGCCAAGGTCGGGATGTCCAAATTCA
ATTTCCCCGTGAGGACATCGGATTTGATCGACTCCATCGAGCCCGACGTG
ATGAGCAAGTTCAACGACACGCTTCGCTACGAGTGGGCCGTGTACGAACA
CGGCATTGGGGTGTTCCTGAGGAGATGTCGGGAGATCTTGCCGGCCACCC
GGCACAAGGAGTTGTGCGTGGTCCCGTTGAGTTAGCGGGGCTGTAGCAGC
TATGGGTTTTGTTGTCGGATGAAGCTCTCTCCGTCCGCCACGGAGATAGA
TGTTTTGCTTGGTGACAGTCATGTATAGTATGCCAGGAAGGGAAAAAAGC
GTTTTTGTCCCTGGTAAATAGTTTTTTCAAGGTTTGTTTTTCGCGATAAT
AAGAAATACTCCATAGTTCAAATGTTAACAAACCAATCGCGTTGAAAACC
ACTTTGACCTTTTCTCCCTGAAACTATTGGAGTTGTACCGGAGAATGTCT
CGTAGGATTGTGGGAAAATTCCAGAGATTATCCACCGAAGTGATAACTCG
TAGCGAGACATACAGTTCCATCTACAGCAAATAAAGCCAGTAAGGACGGC
AGTGGATATTCACAGATTTGACATTTAAACAGTCGATTTTGCCAATTGAG
AATCGACTTCCCGATGAGATGAAGTTTGGTCGGTTGACATGGAAACATTG
TATTTCCTCGGGCAAAATTGGAGGGGCCCTGGATGGGTTGGTCACCATTG
TTGCCGTGTGCTGTACAGTTCATCTGAGGGCCATCCCAGGACCCTGCCAT
GTGCGTGGGTCGTTCTGACGATGATGACTGACAAAGAAAGAGCACCTTTC
AT back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1025:12244..16745+ >mRNA_D-mesarthrocarpus_Contig1025.6.1 ID=mRNA_D-mesarthrocarpus_Contig1025.6.1|Name=mRNA_D-mesarthrocarpus_Contig1025.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1020bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1025:12244..16745+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGCAGGTGAAGCTTGGCGTATGCCTGTCAAGACGGGAATGATGGT
AATGGTACAGATGGCGTTCGCCTTATTCGTCGTCGCGCAATTCGTCCATG
ATGCGACAGAGGAACACCTGGTGGCTTCTCCCTCTTCACATGGAATGGGA
GCGAGAAGACTCGGCACACCTGATGGCAAGAAGCTAATCTTCCAGCAATT
GTCTCTGAACCTGCCCATGGGAAAAGATCTTCTACAGTGGTGTCGGAGGG
AGGGATGTGAGGGTGCTTGGGTGGCGAACAATTGCCACAATGGTTTGAAA
AAGGGGAAAATTTGCCTTGTGGACCACCAGCTCAGCAAGAAGGGGGATGA
CATAAAGTTTATAGCACGGAAACAAGTCCTCTCCGGATGGGTCACATGGG
ACTTTCTGAAGCATATAAAGGGGCCATACTCGGTGGTAACCGTGGTCCAC
AACCCCCTCGTGAGGTACGTGCAAAATCTACAGCTGGCGTACCAGGAGGA
GACCGCGAACATATCCTTCGCGACCATTATTGTCTCGCAGATCATGGACC
TGGACACGAATGACCCCATAGAGATCTACACGAAGGTCGCAGGGATGTTG
TGGAGGCTGGTCAGCAGGGCATCTCTTCGGGCCATCGAGGTACCAAGAGA
AAAAGACATGGAATTGGCGGTGGCTGAGGCCAAGACACACCTGGACACCT
ACTGGTTTATCGGGCTAAGGGAGAACCCCCTCGCGGCAGTCGCCGTCATG
AGGAAGCTCCTGGATCCCGAGGACCGCCACAGCAACTTGTGGGACTCGAT
GGAGGGGAAGGCCAAGGTCGGGATGTCCAAATTCAATTTCCCCGTGAGGA
CATCGGATTTGATCGACTCCATCGAGCCCGACGTGATGAGCAAGTTCAAC
GACACGCTTCGCTACGAGTGGGCCGTGTACGAACACGGCATTGGGGTGTT
CCTGAGGAGATGTCGGGAGATCTTGCCGGCCACCCGGCACAAGGAGTTGT
GCGTGGTCCCGTTGAGTTAG back to top
|