mRNA_D-mesarthrocarpus_Contig10243.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI) HSP 1 Score: 143 bits (360), Expect = 2.780e-37 Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 1 Query: 1 IQSGREVARFGQELWDRINGQNPHEDEVGGGSSGGALLGSVEKPKQLPEDSAVMVEMRGVEECLQERAMQTLREVEALQANARAKEVAWDTSERRRAHRAIREKEARLANAYRTLTLHRIDMDMERMCFIIEQ 399
IQSGREVARFGQELWDRINGQNP DE GG ++GG+ G + K++PEDSAVM+E+R + E L+ R Q RE++AL+A ARA+E W T ERR+A+R IR K+ +L NA + L LH ID+DMER+C+ IEQ
Sbjct: 247 IQSGREVARFGQELWDRINGQNP--DEEGGLAAGGSHGGGDKNIKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 377
BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.100e-36 Identity = 79/133 (59.40%), Postives = 100/133 (75.19%), Query Frame = 1 Query: 1 IQSGREVARFGQELWDRINGQNPHEDEVGGGSSGGALLGSVEKPKQLPEDSAVMVEMRGVEECLQERAMQTLREVEALQANARAKEVAWDTSERRRAHRAIREKEARLANAYRTLTLHRIDMDMERMCFIIEQ 399
IQSGREVARFGQELWDRINGQNP DE GG ++GG+ G + K++PEDSAVM+E+R + E L+ R Q RE++AL+A ARA+E W T ERR+A R IR K+ +L NA + L LH ID+DMER+C+ IEQ
Sbjct: 431 IQSGREVARFGQELWDRINGQNP--DEQGGLAAGGSHGGGHKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKAIRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 561
BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 5.280e-5 Identity = 22/28 (78.57%), Postives = 27/28 (96.43%), Query Frame = 1 Query: 1 IQSGREVARFGQELWDRINGQNPHEDEV 84
IQSGREVARFG+ELW+RINGQ+P E+E+
Sbjct: 207 IQSGREVARFGKELWERINGQDPVEEEL 234 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10243.2.1 >prot_D-mesarthrocarpus_Contig10243.2.1 ID=prot_D-mesarthrocarpus_Contig10243.2.1|Name=mRNA_D-mesarthrocarpus_Contig10243.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=137bp IQSGREVARFGQELWDRINGQNPHEDEVGGGSSGGALLGSVEKPKQLPEDback to top mRNA from alignment at D-mesarthrocarpus_Contig10243:1096..3067- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10243.2.1 ID=mRNA_D-mesarthrocarpus_Contig10243.2.1|Name=mRNA_D-mesarthrocarpus_Contig10243.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1972bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10243:1096..3067- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10243:1096..3067- >mRNA_D-mesarthrocarpus_Contig10243.2.1 ID=mRNA_D-mesarthrocarpus_Contig10243.2.1|Name=mRNA_D-mesarthrocarpus_Contig10243.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=411bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10243:1096..3067- (Discosporangium mesarthrocarpum MT17_79)back to top |