mRNA_D-mesarthrocarpus_Contig10241.3.2 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A848W3C4_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W3C4_9PROT) HSP 1 Score: 296 bits (757), Expect = 1.420e-97 Identity = 156/265 (58.87%), Postives = 196/265 (73.96%), Query Frame = 1 Query: 16 LIMFSSDTRIGRIAQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEF-IQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 L + +SD R + LSL G +WE AGW N A MAP+ G +HPGTIPRL ++ + + E+ ++L QS+ LF TGF +AL+ +PLGI+MAR +RI LESYIL LY TPM ALIPFI++IFGF FWPKV+VV LF+ FPILYNTLEGARS+KPEMLEVA++FRSSE IW DILIPYTLP+ALTG+RQA GRALVGMVAAE L+ +GLG L+ +SR+FDMAGVL I+V T +G+ M + E+++A WRG Sbjct: 5 LALINSDRWAVRWGTIVLSLLAGGLLWESAGWSSNQAIMAPLIGGG----DHPGTIPRLYKYLVHDEEYRLSLLQSVGLFTTGFSLALVAAIPLGIVMARFVTLRIALESYILVLYVTPMIALIPFIMSIFGFDFWPKVLVVYLFAFFPILYNTLEGARSVKPEMLEVAKSFRSSEIAIWRDILIPYTLPYALTGVRQAAGRALVGMVAAEFLLSTSGLGEELITASRNFDMAGVLATILVITCLGITFMRTAQAFEQKYAAWRG 265
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A1Z9JE66_9PROT (ABC transmembrane type-1 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TMED167 TaxID=1986863 RepID=A0A1Z9JE66_9PROT) HSP 1 Score: 295 bits (755), Expect = 2.850e-97 Identity = 156/265 (58.87%), Postives = 199/265 (75.09%), Query Frame = 1 Query: 16 LIMFSSDTRIGRIAQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFI-QEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 L + +SD + V SL +G IWE+ G FN A MAP+ G+D +HPGT+PRL E++ + E+F +L QS+ LF TGF +A+L +P GI+MARL +R+ LESYIL LY TPM ALIPFIL++ GF FWPKV+VV LF+ FPILYNTLEGARS+KPE++EVAR+FRSSE IW DILIPYTLP+ALTGIRQA GRALVGMVAAE FL+ +GLG L+ +SR+FDMAGVL +I+V T +G+ M + +E+R+ WRG Sbjct: 5 LTLVNSDKKPVIWVTVMASLVLGALIWELVGLSFNQAIMAPLLGAD----QHPGTLPRLYEYLFHDEEYFGSLIQSIQLFSTGFMLAVLGAVPFGIVMARLVTLRVALESYILMLYVTPMIALIPFILSVLGFDFWPKVLVVYLFAFFPILYNTLEGARSVKPELIEVARSFRSSEVAIWRDILIPYTLPYALTGIRQAAGRALVGMVAAEFFLSTSGLGEELITASRNFDMAGVLASILVITGLGITFMRFAQAVERRYGAWRG 265
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A0S8CB12_9PROT (ABC transmembrane type-1 domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8CB12_9PROT) HSP 1 Score: 272 bits (695), Expect = 4.990e-88 Identity = 149/269 (55.39%), Postives = 192/269 (71.38%), Query Frame = 1 Query: 1 VQEIALIMFSSDTRIGRIAQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 V+ + + + +SD R R S+ +G IWE AG N MAP+ G + PG LI FI +G+F A S+ LF TGF +AL+I +PLGI++ARL L+R+ LESYIL LY TPM ALIPF+L+I GF FWPKV+VVVLF+ FPILYNTLEGARS+K E+LEVA +FR+SE IW DILIPYTLPFALTGIRQA GRALVGM+AAE FL+ +GLG ++ +SR+ DMA +L AI++ +GV LM + LE++++ WRG Sbjct: 11 VKALVIKLINSDARWIRWLTFAASILLGAAIWEFAGRNANPVFMAPLIGD----ADTPGAARSLIGFIGDGQFRDAFLSSIKLFATGFLLALVIAVPLGIVLARLVLLRVALESYILMLYVTPMVALIPFVLSILGFGFWPKVLVVVLFAFFPILYNTLEGARSVKHELLEVAGSFRASEWSIWRDILIPYTLPFALTGIRQATGRALVGMIAAEFFLSTSGLGEVIMIASRTPDMANMLAAILLIAGLGVILMRGAQALEQKYSAWRG 275
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A346A005_9HYPH (ABC transporter permease n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A005_9HYPH) HSP 1 Score: 256 bits (653), Expect = 4.760e-82 Identity = 132/246 (53.66%), Postives = 181/246 (73.58%), Query Frame = 1 Query: 67 LSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWR 804 +S+ IG+ IWEIAG + A M P TI L + I+ GEF L +S LF TGF +AL +G+PLG+L+AR+R +RIG+E YI+ LYATPM ALIPFIL++ GF F PKV+VV LF+VFP+LYNT+EGARS+KPE++EVA++FRSSE +W ++++PYTLP+ +TG+RQ+IGRALVGM+AAE FL++TGLG ++ +S++FD GV +I V LIGV LM + ++E+ F WR Sbjct: 14 ISILIGIAIWEIAGRSTSQAFMVPF----------SETIVTLWQLIKSGEFGRQLLESAKLFVTGFVLALAVGMPLGLLLARVRFLRIGVEPYIMALYATPMVALIPFILSLMGFGFAPKVLVVFLFAVFPVLYNTVEGARSIKPELIEVAKSFRSSEWALWREVMLPYTLPYTMTGVRQSIGRALVGMIAAEFFLSSTGLGQLIMTASQNFDTGGVFASIFVIGLIGVGLMRLGLKIEQHFVRWR 249
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A534W3N1_9DELT (ABC transporter permease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534W3N1_9DELT) HSP 1 Score: 255 bits (652), Expect = 7.690e-82 Identity = 136/262 (51.91%), Postives = 181/262 (69.08%), Query Frame = 1 Query: 22 MFSSDTRIGRIAQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 M + +TR R A S+ G +WE+AG + N A AP T+ RL E I+ GE +LG SLALF TGFGIAL LP G+L++R+R++R+ L YIL + A PM ALIPFIL+IFG +F KV+VV LF FPILYNT+EGA S++PE++EVAR++RS E IW D+++P T P+A+TG+RQAIGR LVG+VAAE FL+ +G+G L+ S R+FD AG+L ++V TL+GV LM++ R LE RF WRG Sbjct: 1 MLNPETRTARWATYAASVLGGAALWELAGRRANPAVAAPF----------SATLQRLWEMIETGELRASLGGSLALFATGFGIALFTALPFGLLLSRMRVLRVALSDYILLVNAMPMVALIPFILSIFGLEFGAKVLVVFLFCFFPILYNTIEGADSVRPELIEVARSYRSGEWAIWRDVMLPGTFPYAMTGVRQAIGRGLVGVVAAEFFLSASGIGQLLMTSGRNFDTAGLLATVLVITLLGVALMALGRALEDRFTAWRG 252
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A1F4CQ91_9PROT (ABC transmembrane type-1 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4CQ91_9PROT) HSP 1 Score: 241 bits (614), Expect = 4.220e-76 Identity = 135/256 (52.73%), Postives = 172/256 (67.19%), Query Frame = 1 Query: 40 RIGRIAQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 R R V +SL G WEIA A AP L E T+ L E + G S L+ +G +A+ G P G+L+AR+R +R+ LE+YI+ LYATPM ALIPFIL++ GF F PKV+VV LF+VFPILYNT+EGARS++PE++EVA AFRSSE ++W D++IPYTLPFA+TGIRQAI R LVGMVAAE FL+ +GLG ++ S++FD AG+L AI+V L+GV M R LE RFA WRG Sbjct: 6 RWSRHVPVVVSLLAGAAAWEIAAHFTTRAFWAP-------LSE---TLESLAESARSGVLTRQAASSFQLYLSGLALAIFAGAPFGLLLARVRWLRVALENYIMMLYATPMVALIPFILSMMGFGFAPKVLVVFLFAVFPILYNTVEGARSIRPELIEVAHAFRSSEWQLWRDVMIPYTLPFAMTGIRQAIARGLVGMVAAEFFLSPSGLGQMIMMGSQNFDTAGLLAAILVIVLLGVGFMDFGRYLEGRFASWRG 251
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A1F4A431_9PROT (ABC transmembrane type-1 domain-containing protein n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4A431_9PROT) HSP 1 Score: 239 bits (610), Expect = 1.650e-75 Identity = 128/251 (51.00%), Postives = 171/251 (68.13%), Query Frame = 1 Query: 55 AQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 A + SL +G WE+AG + A AP+ T+ L E + G S L+ TG +A+++G P G+L+AR+ +R+ LE YI+ LYATPM ALIPFIL++ GF F PKV+VV LF+VFP+LYNT+EGARS++PE++EVA +FRS E +W D++IPYTLPFA+TGIRQAI R LVGMVAAE FL+ +GLG ++ S++FD A +L AI++ L+GV LM I LEKRFA WRG Sbjct: 10 ATMFASLALGAAAWELAGHLTSDAFWAPL----------STTLKSLGEVVHNGVLLRQAASSFELYLTGLALAVVVGAPFGVLLARITWLRVALEDYIMMLYATPMVALIPFILSMMGFGFAPKVLVVFLFAVFPVLYNTVEGARSVRPELIEVAHSFRSGEWALWRDVMIPYTLPFAMTGIRQAIARGLVGMVAAEFFLSPSGLGQMIMMGSQNFDTASMLAAILIMVLLGVGLMDIGLYLEKRFAAWRG 250
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A1F4AD64_9PROT (ABC transmembrane type-1 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4AD64_9PROT) HSP 1 Score: 237 bits (604), Expect = 1.370e-74 Identity = 123/249 (49.40%), Postives = 170/249 (68.27%), Query Frame = 1 Query: 61 VCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 + SL +G WE+AG + A AP+ T+ L + +EG S L+ +G +A+ +G PLG+L+AR+ +R L+ YI+ LYATPM AL+PFIL+I GF F PKV+VV LF+VFP++YNT+EGARS++PE++EVA AFRS E ++W D++IPYTLPF +TGIRQAI R LVGM+ AE FL+ +GLG ++ S++FD AG+L AI+V ++GV LM + R LE RFA WRG Sbjct: 13 IAASLALGALAWEVAGHSTSGAFWAPL----------SATLKNLWDITREGVLLRQCASSFQLYVSGLMLAIAVGAPLGVLLARVAWLRTALDPYIMMLYATPMVALVPFILSIMGFGFAPKVLVVFLFAVFPVIYNTVEGARSVRPELIEVAHAFRSREWQLWRDVMIPYTLPFTMTGIRQAIARGLVGMIVAEFFLSPSGLGQMIMMGSQNFDTAGMLSAILVIVVVGVGLMDLGRLLENRFAVWRG 251
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: UPI001407597C (ABC transporter permease n=1 Tax=Phytoactinopolyspora limicola TaxID=2715536 RepID=UPI001407597C) HSP 1 Score: 236 bits (603), Expect = 3.350e-74 Identity = 130/246 (52.85%), Postives = 167/246 (67.89%), Query Frame = 1 Query: 70 SLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 SL G IWE+AG + PVF F T+ RL E + GE AL S +FG G IA+L+GLP G+L+AR+R +R+GLE +I GLYA PM ALIPFILAIFGF F PKVIVV LF+VFP++ EGA S+ +EVAR+FR+ ER +W D++IPYT+PFA+TGIR AI RALVGM+AAE FL +GLG ++ +SR FD A V I+V ++GV L+++ LE+RFA WRG Sbjct: 34 SLLAGAAIWELAGHLID-----PVFLVPFT-----DTVRRLGELVASGELPTALLASAQVFGAGLIIAVLVGLPAGLLLARVRFLRVGLEDWITGLYAMPMVALIPFILAIFGFGFTPKVIVVFLFAVFPVIITVYEGASSIPARHIEVARSFRARERHLWRDVVIPYTIPFAMTGIRLAIARALVGMIAAEFFLAVSGLGELILITSRRFDTAAVFATILVVCILGVLLLALGHALERRFAAWRG 269
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Match: A0A534PKM1_9DELT (ABC transporter permease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534PKM1_9DELT) HSP 1 Score: 234 bits (598), Expect = 1.150e-73 Identity = 131/262 (50.00%), Postives = 170/262 (64.89%), Query Frame = 1 Query: 22 MFSSDTRIGRIAQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHPGTIPRLIEFIQEGEFFIALGQSLALFGTGFGIALLIGLPLGILMARLRLMRIGLESYILGLYATPMAALIPFILAIFGFQFWPKVIVVVLFSVFPILYNTLEGARSLKPEMLEVARAFRSSERRIWIDILIPYTLPFALTGIRQAIGRALVGMVAAEIFLNNTGLGGWLVDSSRSFDMAGVLGAIIVTTLIGVFLMSIVRRLEKRFAGWRG 807 M SD R R A LS G +WE+ G + A +P S + RL+E ++ GE L SLALF G G+AL+ LP G+L+AR L+R + IL LYA PM ALIPFIL++ G F KVIVV LF FPILYNT+EGARS+KPE++EVARAFRSSE IW DI++P P+A+TG+RQAIGR LVGMVAAE FL+ +G+G ++ S+R+FD AG+ +++ L+G LM++ R LE RF WRG Sbjct: 1 MLRSDARWVRWATYALSALGGAVLWELGGRGASPAIFSPFSAS----------MERLVEMLRTGELGAGLAGSLALFFAGLGLALVTALPFGLLLARAPLVRAAVSDAILLLYAMPMVALIPFILSLMGVDFGAKVIVVFLFCFFPILYNTVEGARSIKPELIEVARAFRSSEWAIWRDIMVPGAFPYAMTGVRQAIGRGLVGMVAAEFFLSASGIGQLIMTSARNFDTAGLFATVLIIALLGSALMALGRALEDRFTLWRG 252 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10241.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10241.3.2 >prot_D-mesarthrocarpus_Contig10241.3.2 ID=prot_D-mesarthrocarpus_Contig10241.3.2|Name=mRNA_D-mesarthrocarpus_Contig10241.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=266bp MFSSDTRIGRIAQVCLSLFIGLTIWEIAGWQFNAAHMAPVFGSDFALEEHback to top mRNA from alignment at D-mesarthrocarpus_Contig10241:2113..2973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10241.3.2 ID=mRNA_D-mesarthrocarpus_Contig10241.3.2|Name=mRNA_D-mesarthrocarpus_Contig10241.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=861bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10241:2113..2973+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10241:2113..2973+ >mRNA_D-mesarthrocarpus_Contig10241.3.2 ID=mRNA_D-mesarthrocarpus_Contig10241.3.2|Name=mRNA_D-mesarthrocarpus_Contig10241.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=798bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10241:2113..2973+ (Discosporangium mesarthrocarpum MT17_79)back to top |