Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10238.1.1 vs. uniprot
Match:
A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)
HSP 1 Score: 302 bits (773), Expect = 2.050e-89
Identity = 167/336 (49.70%), Postives = 222/336 (66.07%), Query Frame = 2
Query: 2 LGLGLGSG----------QMESEVGWEEAEPTSFVFTGIFPHEVKG------DEEEELLLFEDVN-QPGKALELLEAREANLVAMEADTSSKLTVLEGDLVGEEALLRALEGKKVLAE---QGDEPEEEIVGAALQIVEQVNKVGDLRLTLEELHRSLSLTRSQLAAVGREISVERAAAEERARFEAHRPTRVPAAPFRFDLVTRGVRIRSYRSAGVIAEEVDFRAWIVVPTPLRPWCGGGDDKDSCMYKETWEALEFLPSRDPMLAREMLDITLLLDKFEVIVSRAQYQTILAIIMGNCAEPWAVCPPLLEWARPDPDVEEGVCRDPLKGRLTAQ 949
LG+GLG G SE WEE EPT FV+TG+FP E KG EEE +LLFED + G+ALE L ARE+ L++ E S+ +LV EA L E + E G + V A + +V QVN+VGDL+L+L+E +L RS+L +V RE + ER E+ARFEAHRP+RVP AP RFD+V GV IRSYRSA ++AE + RAW+VV TPLRPWCGGGD K+S M+ W++L FLP+RDPM A+E LD+T+L+D+ + ++R+QY TI++I+M N EPW++CPP++EW + DP+V +GVCRDPL+GR TAQ
Sbjct: 1609 LGVGLGEGGXXXXXXXXXXXXSE--WEEGEPTDFVYTGLFPGEAKGWGGRQGGEEEPVLLFEDETVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEASLSVAEKHQQQLEATADGGTGDGGRVSAVMDVVNQVNRVGDLKLSLDERVETLKRVRSRLESVRREANAERTVQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAENLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDLTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 1942
BLAST of mRNA_D-mesarthrocarpus_Contig10238.1.1 vs. uniprot
Match:
D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)
HSP 1 Score: 298 bits (764), Expect = 2.220e-88
Identity = 165/346 (47.69%), Postives = 222/346 (64.16%), Query Frame = 2
Query: 2 LGLGLGSGQMESEVG----------WEEAEPTSFVFTGIFPHEVKG-------DEEEELLLFED-VNQPGKALELLEAREANLVAMEADTSSKLTVLEGDLVGEEALLRALEGKKVLAE------------QGDEPEEEIVGAALQIVEQVNKVGDLRLTLEELHRSLSLTRSQLAAVGREISVERAAAEERARFEAHRPTRVPAAPFRFDLVTRGVRIRSYRSAGVIAEEVDFRAWIVVPTPLRPWCGGGDDKDSCMYKETWEALEFLPSRDPMLAREMLDITLLLDKFEVIVSRAQYQTILAIIMGNCAEPWAVCPPLLEWARPDPDVEEGVCRDPLKGRLTAQ 949
LG+GLG G M + WEE EPT FV+TG+FP E KG +EE LLLFED + G+ALE L ARE+ L++ E S+ +LV EA L E + E G + V A + + QVN+VGDL+L+L+E +L RS+L +V RE + ER A E+ARFEAHRP+RVP AP RFD+V GV IRSYRSA ++AE++ RAW+VV TPLRPWCGGG K+S M+ W++L FLP+RDPM A+E LD+T+L+D+ + ++R+QY TI++I+M N EPW++CPP++EW + DP+V +GVCRDPL+GR TAQ
Sbjct: 606 LGVGLGEGGMGGDXXXXXXXXXXXEWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEPVLLLFEDEAVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAAXXXXXXXXXADGGTGDGGRVSAVMDVFNQVNRVGDLKLSLDERVETLKRVRSRLGSVRREANAERTAQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGAAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 951
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10238.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.05e-89 / Id = 49.70 Expect = 2.22e-88 / Id = 47.69 Sequence A0A6H5K463_9PHAE D8LME4_ECTSI
Match Name E-value Identity Description
A0A6H5K463_9PHAE 2.050e-89 49.70 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LME4_ECTSI 2.220e-88 47.69 Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 955 Hectar predicted targeting category other localisation Exons 7 Cds size 927
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789166.1042852-CDS-D-mesarthrocarpus_Contig10238:14..224 1680789166.1042852-CDS-D-mesarthrocarpus_Contig10238:14..224 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10238 15..224 - 1680789166.1171076-CDS-D-mesarthrocarpus_Contig10238:770..911 1680789166.1171076-CDS-D-mesarthrocarpus_Contig10238:770..911 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10238 771..911 - 1680789166.1286757-CDS-D-mesarthrocarpus_Contig10238:1674..1762 1680789166.1286757-CDS-D-mesarthrocarpus_Contig10238:1674..1762 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10238 1675..1762 - 1680789166.1380818-CDS-D-mesarthrocarpus_Contig10238:2295..2450 1680789166.1380818-CDS-D-mesarthrocarpus_Contig10238:2295..2450 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10238 2296..2450 - 1680789166.147893-CDS-D-mesarthrocarpus_Contig10238:2882..3083 1680789166.147893-CDS-D-mesarthrocarpus_Contig10238:2882..3083 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10238 2883..3083 - 1680789166.1591082-CDS-D-mesarthrocarpus_Contig10238:3547..3607 1680789166.1591082-CDS-D-mesarthrocarpus_Contig10238:3547..3607 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10238 3548..3607 - 1680789166.1723995-CDS-D-mesarthrocarpus_Contig10238:4109..4181 1680789166.1723995-CDS-D-mesarthrocarpus_Contig10238:4109..4181 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10238 4110..4181 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789166.1833925-UTR-D-mesarthrocarpus_Contig10238:4181..4209 1680789166.1833925-UTR-D-mesarthrocarpus_Contig10238:4181..4209 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig10238 4182..4209 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10238.1.1
>prot_D-mesarthrocarpus_Contig10238.1.1 ID=prot_D-mesarthrocarpus_Contig10238.1.1|Name=mRNA_D-mesarthrocarpus_Contig10238.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=309bp
MESEVGWEEAEPTSFVFTGIFPHEVKGDEEEELLLFEDVNQPGKALELLE back to top mRNA from alignment at D-mesarthrocarpus_Contig10238:15..4209-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10238.1.1 ID=mRNA_D-mesarthrocarpus_Contig10238.1.1|Name=mRNA_D-mesarthrocarpus_Contig10238.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10238:15..4209- (Discosporangium mesarthrocarpum MT17_79)CCTTGGGCTAGGTCTGGGGAGTGGTCAG ATGGAGAGCGAGGTTGGGTGGG
AGGAAGCGGAGCCCACATCATTTGTGTTCACCGGCATTTTCCCACATGAG
GTGGGGTGGGGACTGCCTTCTGTCTGAGGCACTTTTCCATAATAGGGTTG
GGGTTAGGGCAGAATACCGCGTGGTGGTGTAATGTGCTTTAAAGTACTTT
GTAATAAATTTGAAGGGCAGGACTTGTCCTTTCTAGTCCAATTCTTGATG
CAGTTTTCCACGAATTCTAGGGTTAGGGTTGTCGTAGATGTCGTTTGTGC
AGATGAGTTGATGCAACTCAGTTATGCTCTTGTGATGTAATGGTATATGA
GGCATTTAGTACTATTTCTGTACTTCAAAATATTTCTCATGAACAGTATG
TTTATACCGCTACAGTATATTTATACTGCTACGGTATGTCTGAAGGACAC
CGGACACACACCGTGTTGCATCACTGCTGTACGGTAAAACAGTTGGCAGT
TGACTTGCATTTGAAGAATGTGTTTCTCGCCCGTTGAACTGTGGCAGATT
AGAATCTCTTCTTCTTGTCCAAGTTCTATGGTAATGTGTACCTGTCCCTC
AGGTGAAAGGTGATGAGGAGGAGGAGCTGCTTCTCTTCGAGGATGTCAAT
CAGCCTGGCAAG GTATCAGACACAGGGACCCTGCAGAAATGGGGGGTAAA
ACATCATGTTTCAAAGAAGTCGTAAGGTTTTCTTTGTTTTGATGGTTTTA
TGATGCACAAATCGATGACAGGAGAGCCGGTTTGTGTGGGTGATGCTGAT
GAGCCTAGGCATTTGTTTCATAATTTGATCATCTGATTTTTTGCCTTCGT
GATATTTTTAGTGTTTAGTACAAAGTACAGAATGGCGCACTATTTCCAAG
GATTTTTTCTTTTAATAGAGACCTTAACCAGTGGGGAATGTCACATGTTT
TTGCCTGATACCCGTGCACCCAATGTGTGTGAATGTCACATCCCCTTTCC
CGTAACACATTGCCGATCCGCTTTCCCGTACGCAGTTCCCACCTCCCGCT
TCAATCTCATTCATTTCCCCCTCAACCAACTCCACTCAACCTAACCCGGT
CATATTTGCCACCCTGGGCTCTCAAGGCTTTGGAACTTCTCGAGGCCCGT
GAGGCTAACTTGGTTGCCATGGAGGCTGATACCAGTTCAAAGCTGACTGT
GCTGGAGGGCGATCTGGTTGGGGAAGAGGCATTACTGAGGGCACTGGAAG
GGAAGAAGGTGTTAGCCGAGCAGGGAGATGAACCAGAAGAGGAAATAGTG
GGGGCTGCCCTGCAAATTGTGGAACAG GTGCAATGTTCCCTGCTTACCAG
CACGTTTTACTTTCAAAGTACAAAATGCAATCTTTTTTTTGTAGTACTAG
TACACAGTGTGGCTCTGCTTGGTACAGAAATAATTGGTGCACATTCTGTT
TTTGTGATTTGTTGGTACAAATCTGTTTTTGTGCTTTGTGGGTGTAATCT
TTGTGTGCTGAGTCAGGGTGAGAGGCAGGCATGGGGAGTGGGTGACAGCC
ACAGTGACAGAGGAAAATGAGATCATGTCTCCACACAAAACACTACATGC
TGCAGTACATAGAGTAGTGCATCAAATGCTTAGCCCTACTTATTACGATC
CTGCAGCGGAGATCTGTTTCCTTTTTCTTTTCATTTTCCTTCAAGAGCTG
CAACCTTTTGGCTCAGTTTTTGACCTCAATTTTATGGTAATTATTTCACG
CCACCCAAGGTGAACAAGGTGGGAGACCTTCGACTTACATTGGAGGAGTT
GCACAGGTCCCTCAGCCTCACACGATCACAACTGGCAGCAGTGGGCAGGG
AGATTTCTGTTGAGAGGGCTGCTGCAGAGGAGAGGGCTCGCTTTGAGGCA
CACAGACCCACAAG GTGTGGATCAGGTTGCACTTATTCATTGCCTTGATC
TTACTGGTGGGAGTTTTTTTTGGTATGTTTTGAGTGATGGGAGTGATAGC
AGGAGGTTGTCAATTGACATGTTACTGTTGTGCATTAGAGCTCTGCTGTA
ATGTAGGGTCTGGAGTGCTTCTCAAAGTACTTCAAAGAAATAAAAATCAG
GTGATTTTTTTTAGTTTCTGAGCCTGGTGGAGGAAGATTTTGGAGTAGTT
GATTCACCTGGTATTAAACATCCATTATGAATTACTTTGTGATATTTTCA
TCAAAGGGCTAGCATATGGGTTGGGCTACACTCCATCAACTGTTTGAAAC
CACTCTGCTTGGGGTGGACAATGACCCATAACCCTAACCCTATCCTCAAA
TAATCTATCGTCTGGAGCTAGGGATCAACTTCGTACAAGCATGGTAGATC
ATCTGTGCAATTTTCCTTAGCCTCCCCCACTCTAGCACCAAACAACCCGT
GTGGCTCTCCTGGACCTCCCTTCTCTCCCTCCCTCCTGCCATACCAGGGT
GCCAGCTGCACCCTTCCGCTTTGACCTGGTAACGAGGGGGGTGAGGATAC
GCTCATATCGCTCAGCTGGTGTCATTGCAGAAGAG GTGTGCTGCGCCGTT
TCATATTGCGGTTTTGTACTTTTTTCGTTCTCTTGTTGGTCTTCTTTGGT
TCTTGGGGCCTGGATTGTTTTGTGGCTTTTTTTTTTTTCAAGTAGTTTAC
GCTTAATGGACTAAGGTACCCTGGTCTTGGGATTGGATGGGATGGGGAAG
TGGGAGGAAGGTAGTTTTTCAAATGGAAGGTCGCAGGTTGCGGCAGATTA
AGGCTCAGCATTGAATAGATTACAGTTCAAACTAATACTTAGGTACATAA
GAAGTATTACTGAAGTACATTAGAAGTAATACTGAAGTACAATGGAAGTA
GTACTGAAGTACATTAGAAGTAATACTGAAGGACATTAGAGGTAATACTA
AAGCACATTAGAGGAAGGTTTTTCACCGAGTTTGTGTTTGTGTAGCCTTA
AAGATTTTTTCTACGAGGTTCAGGAATCCTCAGGGAAAAATGTCTGAATT
TGCTTTTTTTATTTGGTTTCACTCCACTATGATGTTCATTCCTTTGGTTT
TCCTGAATCGTTGGTTGCCCTCGACCCTTGCCATGTTCAAGTTGGAGATG
TCTATAACTGCTTTGAAGTATGTTGTTTTCTTCACGCTTTCCTTGGAATT
GACTTGGAATATGTGAAGTTTTACTGCCTTGTATTGCTTTCATGTATGCA
GAGCTCTGTATGCCTAAAAGTACATTTGCTTTTGTTTTTGCTTTTGTTTT
TGCTTTTGTTTTTTCTTTTGTTTTTGTTTTTTTCGTTTTTTTTGATAGGT
TGATTTTCGTGCATGGATTGTCGTGCCGACACCATTGCGTCCCTGGTGTG
GAGGGGGGGATGACAAAGATTCCTGCATGTACAAGGAGACATGGGAAGCA
CTGGAATTCCTGCCTTCAAGGGACCCCATGCTGGCAAGG GTGAGTGAGGG
AGGTCAACTCACAGAGGTGTATATATTTTGGACTTTGAAATTCAGTACTT
CATGAAGTGCTTTGATATACCTTGGAAGTACCTTGAAGTTGCACGTTTAC
ATTCTATGTGGTTACATCATATGTATATATATATCATACATATATTGCAT
ACACCTATTGCGTACATACTTGCAGTACGTCCTAGAAGTTCTTCAAAGAA
GTACCAAGTACCAAGTATTACTTTCAGTACTTAGAAAGAATAAGGATCTG
TATTTTTTTAGTATTAAGTATGTGCCAGTGGATATCTTAAATAGCTTGGA
TATCTTGACAATCTTGGATACCTTGGATACCTTGGATACCTTAACTATCT
TGGATACCTTGGGTGTCTTGCATATCGTAGATATCTTGAATGTCTTGCAT
ATCTTGGGTATCTTGACTTTCTTGGACTTCTTGACTACCTTGGATGTCTC
GGATATCTTGGATACCCGGAGTCCCCCACATGCCTTGCCAATGGGAACCA
TCTCACTGTCGAATGACAAAAACAAACACGTCCAGGAAATGCTGGACATA
ACCCTACTTCTGGACAAGTTCGAGGTCATTGTCTCGAGGGCACAATACCA
AACTATACTGGCCATCATCATGGGGAACTGTGCTGAGCCTTGGGCGGTGT
GCCCACCTCTTCTGGAGTGGGCCAGACCTGATCCGGACGTTGAAGAGGGT
GTGTGCAGAGACCCCTTAAAGGGAAGGCTCACTGCTCAGGTTTGA back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10238:15..4209-
>mRNA_D-mesarthrocarpus_Contig10238.1.1 ID=mRNA_D-mesarthrocarpus_Contig10238.1.1|Name=mRNA_D-mesarthrocarpus_Contig10238.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=927bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10238:15..4209- (Discosporangium mesarthrocarpum MT17_79) back to top