mRNA_D-mesarthrocarpus_Contig10224.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.430e-14 Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1 Query: 91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT---GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEELWALEAAA 363
TPSY +P+D+ CS R+ E VLND +V + G F+H RNP EE LF++EDER LD +DGVA+ ARLEP +EE+ AL A A
Sbjct: 528 TPSYRELPQDYQVTSCSGRSPNEDAVLNDTWVSVPVGSEDSGSFKHMRRNPNEEQLFKVEDERFELDMLIDGVASAIARLEPAEEEIEALRATA 621
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A7S4IGZ1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IGZ1_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.750e-14 Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGTG---FRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEELWAL 351
R +PSY +PRD+PAPPCS R+V E VLND +V + G FRH +N EE LFR EDER +D +D AA RLEP+ EE+ L
Sbjct: 226 RCSPSYRALPRDYPAPPCSERSVVETAVLNDVWVSLPVGSEESYTFRHMRKNQYEEMLFRTEDERFEIDMVIDSNAATLRRLEPIAEEIEVL 317
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: K0TF38_THAOC (HDAC_interact domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TF38_THAOC) HSP 1 Score: 77.0 bits (188), Expect = 1.590e-11 Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 1 Query: 85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGTG---FRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEELWAL 351
+ +PSY +PRD+P PPCS R+V E +VLND +V + G FRH +N EETLFRLED R +D LD A RL + +EL L
Sbjct: 787 KCSPSYRALPRDYPDPPCSERSVAETKVLNDIWVSLPVGSEESYTFRHMRKNQFEETLFRLEDMRFEIDMCLDSNATTLQRLTMIYDELQFL 878
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A067JP30_JATCU (HDAC_interact domain-containing protein n=4 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JP30_JATCU) HSP 1 Score: 70.9 bits (172), Expect = 1.560e-9 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
R +PSY +P+++P P S RTV A VLND++V + G F+H +N EE+LFR ED+R LD L+ V R+E L E++
Sbjct: 484 RCSPSYRLLPKNYPIPSASQRTVLGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKI 571
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: W9R6W8_9ROSA (Paired amphipathic helix protein Sin3-like 4 n=3 Tax=Morus notabilis TaxID=981085 RepID=W9R6W8_9ROSA) HSP 1 Score: 70.1 bits (170), Expect = 2.770e-9 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
R TPSY +P+++P P S RTV VLND++V + G F+H +N EE+LFR ED+R LD L+ V R+E L E++
Sbjct: 508 RCTPSYRLLPKNYPIPSASQRTVLGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKI 595
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A4P1RKE5_LUPAN (HDAC_interact domain-containing protein n=3 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1RKE5_LUPAN) HSP 1 Score: 69.7 bits (169), Expect = 3.650e-9 Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
+PSY R+P D+P P S R+ A+VLND++V + G F+H RN EE LFR ED+R LD L+ V++ A R E L +
Sbjct: 476 SPSYRRLPADYPFPSVSHRSELAAQVLNDHWVSVTSGSEDYSFKHMRRNQYEENLFRCEDDRFELDMLLESVSSAAKRAEELYNNI 561
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A022R394_ERYGU (HDAC_interact domain-containing protein (Fragment) n=3 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R394_ERYGU) HSP 1 Score: 68.9 bits (167), Expect = 6.450e-9 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLE 324
R +PSY R+P D+P P S R+ + VLND++V + G F+H RN EE+LFR ED+R LD L+ V A A ++E
Sbjct: 489 RCSPSYRRLPEDYPIPLASQRSELGSHVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTATAKKVE 570
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A251RUQ4_HELAN (Putative histone deacetylase interacting domain, Sin3 n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RUQ4_HELAN) HSP 1 Score: 68.6 bits (166), Expect = 8.440e-9 Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
TPSY +P+++P P S RT+ A VLND++V + G F+H +N EE+LFR ED+R LD L+ V R+E L +++
Sbjct: 558 TPSYRLLPKNYPIPSVSHRTIIGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTRRVEELLDKI 643
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A830BUA6_9LAMI (Paired amphipathic helix protein sin3-like 4 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BUA6_9LAMI) HSP 1 Score: 67.0 bits (162), Expect = 2.680e-8 Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
TPSY R+P ++P P S +T A+VLND++V + G F+H +N EE+LFR ED+R LD L+ V A +E L + +
Sbjct: 446 TPSYRRLPANYPIPSASCKTEIGAQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATVKHVEELLDRM 531
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: SNL5_ARATH (Paired amphipathic helix protein Sin3-like 5 n=10 Tax=Arabidopsis thaliana TaxID=3702 RepID=SNL5_ARATH) HSP 1 Score: 65.1 bits (157), Expect = 1.080e-7 Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
TPSY R+P D+P S R +VLND++V + G F+H +N EE+LFR ED+R LD L+ V+A R+E L E++
Sbjct: 320 TPSYRRLPDDYPIQIPSYRNSLGEKVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVSAAIKRVESLLEKI 405 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10224.4.1 >prot_D-mesarthrocarpus_Contig10224.4.1 ID=prot_D-mesarthrocarpus_Contig10224.4.1|Name=mRNA_D-mesarthrocarpus_Contig10224.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=370bp LERSTVQALASDLAHGVSREGLLARAPPRVTPSYVRVPRDWPAPPCSSRTback to top mRNA from alignment at D-mesarthrocarpus_Contig10224:2949..4060- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10224.4.1 ID=mRNA_D-mesarthrocarpus_Contig10224.4.1|Name=mRNA_D-mesarthrocarpus_Contig10224.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:2949..4060- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10224:2949..4060- >mRNA_D-mesarthrocarpus_Contig10224.4.1 ID=mRNA_D-mesarthrocarpus_Contig10224.4.1|Name=mRNA_D-mesarthrocarpus_Contig10224.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1110bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:2949..4060- (Discosporangium mesarthrocarpum MT17_79)back to top |