mRNA_D-mesarthrocarpus_Contig10202.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10202.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10202.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10202.1.1 vs. uniprot
Match: D7FHF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.460e-13
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1

Query:   13 QASDPVSLCTQCMPPWVRGLTETFPGLFSLEERLSLMKKTAFGRARAVTSVQ 168
            QA +P++LCT  +P W  GL   FP LFSLE RLSL++KTAFG ARAV  VQ
Sbjct:    8 QACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ 59

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BLAST of mRNA_D-mesarthrocarpus_Contig10202.1.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.920e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1

Query:   13 QASDPVSLCTQCMPPWVRGLTETFPGLFSLEERLSLMKKTAFGRARAVTSVQ 168
            +A +P++LCT  +P W  GL   FP LFSLE RLSL++KTAFG ARAV  VQ
Sbjct: 1469 KACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ 1520

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10202.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10202.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7FHF2_ECTSI	5.460e-13	61.54	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K2P5_9PHAE	3.920e-11	59.62	HECT domain-containing protein n=1 Tax=Ectocarpus ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig10202	contig	D-mesarthrocarpus_Contig10202:102..275 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	45157.CMI198CT
PFAMs	Ank_2,HECT
Model size	174
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03874,ko:K10590
KEGG Pathway	ko04120,map04120
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	8.43e-06
EggNOG OGs	COG5021@1\|root,KOG0168@2759\|Eukaryota,KOG0170@2759\|Eukaryota
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-25_002610.1
EC	2.3.2.26
Description	negative regulation of histone ubiquitination
Cds size	174
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789164.1188157-CDS-D-mesarthrocarpus_Contig10202:101..275	1680789164.1188157-CDS-D-mesarthrocarpus_Contig10202:101..275	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig10202 102..275 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig10202.1.1	prot_D-mesarthrocarpus_Contig10202.1.1	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig10202 102..275 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10202:102..275+
coding sequence from alignment at D-mesarthrocarpus_Contig10202:102..275+

protein sequence of mRNA_D-mesarthrocarpus_Contig10202.1.1

>prot_D-mesarthrocarpus_Contig10202.1.1 ID=prot_D-mesarthrocarpus_Contig10202.1.1|Name=mRNA_D-mesarthrocarpus_Contig10202.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=58bp
RVIIQASDPVSLCTQCMPPWVRGLTETFPGLFSLEERLSLMKKTAFGRAR
AVTSVQV*

mRNA from alignment at D-mesarthrocarpus_Contig10202:102..275+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10202.1.1 ID=mRNA_D-mesarthrocarpus_Contig10202.1.1|Name=mRNA_D-mesarthrocarpus_Contig10202.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=174bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10202:102..275+ (Discosporangium mesarthrocarpum MT17_79)
CGGGTCATCATACAGGCGTCGGACCCAGTGTCGTTGTGCACCCAGTGCAT
GCCACCCTGGGTGAGGGGCCTCACGGAGACCTTCCCAGGTCTGTTCTCAT
TGGAAGAACGCCTTTCCCTCATGAAGAAAACCGCCTTTGGCAGGGCCAGA
GCGGTCACGTCTGTTCAGGTGTGA

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10202:102..275+

>mRNA_D-mesarthrocarpus_Contig10202.1.1 ID=mRNA_D-mesarthrocarpus_Contig10202.1.1|Name=mRNA_D-mesarthrocarpus_Contig10202.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=174bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10202:102..275+ (Discosporangium mesarthrocarpum MT17_79)
CGGGTCATCATACAGGCGTCGGACCCAGTGTCGTTGTGCACCCAGTGCAT
GCCACCCTGGGTGAGGGGCCTCACGGAGACCTTCCCAGGTCTGTTCTCAT
TGGAAGAACGCCTTTCCCTCATGAAGAAAACCGCCTTTGGCAGGGCCAGA
GCGGTCACGTCTGTTCAGGTGTGA