mRNA_D-mesarthrocarpus_Contig102.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.550e-14 Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 2 Query: 368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697 +PTK R+S +L ++ + LE++GL ++TSD+GSDVKRL DVL+ L W CV + N AL EA G+ +DP++S N AR+ + VK V+EH+ KSP KA F++ Q Sbjct: 205 NPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGL-WEWCVCHMINCALVEAFGTHVDPAKSGNPGARKVITTVKKVVEHIRKSPRAKAIFEEEQ 319
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A2V3ILY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY8_9FLOR) HSP 1 Score: 75.9 bits (185), Expect = 7.510e-13 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 2 Query: 353 PFNGIDPTKRMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697 P + P + +SD+L LW + + + +STSD+GSDVKRL VL+ W C+P + N L A G+ L+ +N AR+ LK +K VI H+NKS MK F++ Q Sbjct: 129 PSGNLLPGRSLSDILQLWTNKIILEFNVSYDKILSSTSDTGSDVKRLCSVLI-PESWEWCLPHMLNCVLVGAFGTGLNCVNIRNNGARRLLKDLKKVIRHVNKSSVMKQKFKETQ 242
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 8.380e-13 Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2 Query: 368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697 +PTK R+S +L ++ L ++GL ++TSD+GSDVKRL DVL+ L W CV + N A+ +A G +DP++S+N AR+ + VK ++EH+ KSP KA F++ Q Sbjct: 26 NPTKELLEDNRLSTLLQKYLERVLAEYGLDVSLLFSATSDAGSDVKRLCDVLLPGL-WEWCVCHMMNCAVVKAFGMHVDPAKSRNPGARKVITTVKTIVEHIRKSPRAKAIFEEEQ 140
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5KWS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS6_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.060e-12 Identity = 50/116 (43.10%), Postives = 72/116 (62.07%), Query Frame = 2 Query: 368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697 +PTK R+S ++ + + LE++GL ++TSDSGSDVKRL DVL+ L W CV + N AL EA G+ +D ++S+N AR+ + K V+EH+ KSP KA F+Q Q Sbjct: 279 NPTKELLEDNRLSALVQKHLESVLEEYGLDVSLVFSATSDSGSDVKRLCDVLLPGL-WEWCVCHMINCALVEAFGTHVDSAKSRNPGARKVITMGKKVVEHIPKSPRAKAIFEQEQ 393
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A2R6X362_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X362_MARPO) HSP 1 Score: 75.5 bits (184), Expect = 2.790e-12 Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 2 Query: 377 KRMSDVLLLWMTTALEKHGL-LRQDAATSTSDSGSDVKRLLDVLV--WCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQ 688 ++ S VL W L + G+ +R+D TS SDSGSDVKR L VL+ W W C+ + + ALT+A G+++DP SKN AR + +K VIE +NKS ++ F+ Sbjct: 217 EKASAVLDQWSQGVLSEFGIEVRRDVLTSVSDSGSDVKRTLQVLMDAW---WEWCISHLSHLALTDAFGTAIDPVASKNALARVFFRTIKKVIESVNKSEYLQGAFE 320
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5KEC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC8_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 9.190e-6 Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKN 604 +PTK R+S +L ++ + LE++GL ++TSD+GSDVKRL DVL+ L W CV + N AL EA G+ ++P++S N Sbjct: 126 NPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGL-WEWCVCHMINCALVEAFGTHVNPAKSIN 209 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig102.2.1 >prot_D-mesarthrocarpus_Contig102.2.1 ID=prot_D-mesarthrocarpus_Contig102.2.1|Name=mRNA_D-mesarthrocarpus_Contig102.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=105bp MSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCback to top mRNA from alignment at D-mesarthrocarpus_Contig102:4222..4918- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig102.2.1 ID=mRNA_D-mesarthrocarpus_Contig102.2.1|Name=mRNA_D-mesarthrocarpus_Contig102.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=697bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:4222..4918- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig102:4222..4918- >mRNA_D-mesarthrocarpus_Contig102.2.1 ID=mRNA_D-mesarthrocarpus_Contig102.2.1|Name=mRNA_D-mesarthrocarpus_Contig102.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=315bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:4222..4918- (Discosporangium mesarthrocarpum MT17_79)back to top |