Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10198.3.1 vs. uniprot
Match:
A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)
HSP 1 Score: 224 bits (570), Expect = 2.040e-60
Identity = 167/425 (39.29%), Postives = 217/425 (51.06%), Query Frame = 1
Query: 76 PRHRQGKHYLVVNRTDRPVWYGQALTTETLLLGPCEETPYSWRNVP--VPGMARMTKELVPSRLCLCLRFSLHHDPQQLPGIGGG---ADEDCEGRMGAWTEPVAVDEPGTCKRLLWMAGAMGRDEGLGSQQASQMGTGVVLPLWVVVVKEGLQSRIELYGEWSFTNHLPRRVQVTWSVAISPSDSLRRQSDPLGTRGTLKLGPSGKNQADDQRGGGRLASRFDQRSRASETSALSACLGPGNAASGEGWTSELMLEFRVRALNNRSVAVGSIGPPPVATQGFNDEGIGHGARGGRGGAGRRGATTGTGVRTEQVPGLGEAHVLGERT-WSMTRQSEWVEASPGAYISLIACASADPGVTSLWFWCVAEREWVLLADCEACRSGVGGHQRHPGRMSIKLHPLALVTNRCTQSLTAWLGVDGGAGG 1332
PR R K Y++ N TDR +W+GQ TTETL L EET Y WR +P + A K SRL L LR +LH ++ G GGG A + G GAWTEP VD GT K + S + V LPLWV V K GL++RI +GEW FTNHLP+ +QV W + ++ R +P GTRG L L + GR S S +A S+ LG G A G SELMLEFR+ + + + VGS+GPPPVAT+ D G A G G G+ G+ E + G E V + W +TRQSEWV+A P +++LI+CAS DPG++ FWCVA R+ A+ GH+ + G+M I LHP+ALV N + + A L G GG
Sbjct: 2793 PRQR-SKRYIITNHTDRNLWFGQVSTTETLFLRAGEETLYRWRTIPRTLAAGAAGRKGDDASRLVLMLRLALH----RVSGSGGGYAGAGSERGGWYGAWTEPFPVDHVGTFK------------------EESDL---VTLPLWVEVDKNGLETRIAFHGEWVFTNHLPQEIQVAWVTSAGVGNAGRCLVEPTGTRGGLSLEACSTS--------GRADGSLHPVS-CSALTASSSSLGTGQAQGGR--LSELMLEFRL-STPDAAAFVGSVGPPPVATE---DLGGHPAAARDADGLGDGGSYDRRGLDDELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGG 3167
BLAST of mRNA_D-mesarthrocarpus_Contig10198.3.1 vs. uniprot
Match:
D8LCN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN3_ECTSI)
HSP 1 Score: 159 bits (402), Expect = 1.380e-40
Identity = 127/338 (37.57%), Postives = 166/338 (49.11%), Query Frame = 1
Query: 343 GRMGAWTEPVAVDEPGTCKRLLWMAGAMGRDEGLGSQQASQMGTG------VVLPLWVVVVKEGLQSRIELYGEWSFTNHLPRRVQVTWSVAISPSDSLRRQSDPLGTRGTLKLGPSGKNQADDQRGGGRLASRFDQRSRASETSALSACLGPGNAASGEGWTSELMLEFRVRALNNRSVAVGSIGPPPVATQGFNDEGIGHGARG-GRGGAGRRGATTGTGVRTEQVPGLGEAHVLGERT-WSMTRQSEWVEASPGAYISLIACASADPGVTSLWFWCVAEREWVLLADCEACRSGVGGHQRHPGRMSIKLHPLALVTNRCTQSLTAWLGVDGGAGG 1332
GR W P E RLL A A EG AS G G V LPLWV VVK GL++RI +GEW F N+LP+ +QV W + ++ R +P GTR L L A R GG L AS +S PG + SELMLEFR+ + + + VGS+GPPPVAT+ + GH A GG G+ G+ E + G E V + W +TRQSEWV+A P +++LI+CAS DPG++ FWCVA R+ A+ GH+ + G+M I LHP+ALV N + + A L G GG
Sbjct: 5 GRWKQWARPSEEAELAAA-RLLRGAEA----EGQVGADASARGAGHQESDFVTLPLWVEVVKNGLETRIAFHGEWVFANYLPQEIQVAWVTSAGVGNAGRCLVEPTGTREGLSLEAC----ATSGRAGGSLHPLSCSALTASSSS-------PGAGQAHGERLSELMLEFRL-STPDAAACVGSVGPPPVATE----DSAGHPAAARDAGGFADGGSFDSRGLDDELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGG 312
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10198.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.04e-60 / Id = 39.29 Expect = 1.38e-40 / Id = 37.57 Sequence A0A6H5KKG1_9PHAE D8LCN3_ECTSI
Match Name E-value Identity Description
A0A6H5KKG1_9PHAE 2.040e-60 39.29 VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more] D8LCN3_ECTSI 1.380e-40 37.57 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Seed ortholog 2880.D8LBD2 Preferred name VPS13B PFAMs Chorein_N,SHR-BD,VPS13,VPS13_C Model size 1354 Max annot lvl 2759|Eukaryota KEGG ko ko:K19526 Hectar predicted targeting category other localisation GOs GO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666 Exons 4 Evalue 6.47e-65 EggNOG OGs COG5043@1|root,KOG1809@2759|Eukaryota Description regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization Cds size 1353 COG category U BRITE ko00000
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789162.8327382-CDS-D-mesarthrocarpus_Contig10198:1980..2379 1680789162.8327382-CDS-D-mesarthrocarpus_Contig10198:1980..2379 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10198 1981..2379 + 1680789162.8480299-CDS-D-mesarthrocarpus_Contig10198:2781..2964 1680789162.8480299-CDS-D-mesarthrocarpus_Contig10198:2781..2964 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10198 2782..2964 + 1680789162.859848-CDS-D-mesarthrocarpus_Contig10198:3434..3845 1680789162.859848-CDS-D-mesarthrocarpus_Contig10198:3434..3845 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10198 3435..3845 + 1680789162.8707054-CDS-D-mesarthrocarpus_Contig10198:3905..4265 1680789162.8707054-CDS-D-mesarthrocarpus_Contig10198:3905..4265 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10198 3906..4265 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10198.3.1
>prot_D-mesarthrocarpus_Contig10198.3.1 ID=prot_D-mesarthrocarpus_Contig10198.3.1|Name=mRNA_D-mesarthrocarpus_Contig10198.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=451bp
LSPGGSLYQPHPLQSCSRRERVKEQPRHRQGKHYLVVNRTDRPVWYGQAL back to top mRNA from alignment at D-mesarthrocarpus_Contig10198:1981..4265+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10198.3.1 ID=mRNA_D-mesarthrocarpus_Contig10198.3.1|Name=mRNA_D-mesarthrocarpus_Contig10198.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2285bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:1981..4265+ (Discosporangium mesarthrocarpum MT17_79)CTCTCGCCAGGGGGCTCACTGTATCAGCCGCATCCCCTCCAGAGCTGCAG
CAGGAGGGAGAGAGTGAAGGAACAGCCCCGTCACAGGCAAGGGAAGCACT
ACCTCGTTGTAAACCGGACGGATCGCCCGGTGTGGTACGGCCAGGCCCTC
ACCACCGAGACCCTCCTCCTGGGCCCCTGTGAAGAGACGCCCTACAGCTG
GAGGAACGTTCCGGTGCCAGGGATGGCGAGGATGACCAAGGAATTGGTGC
CATCCCGGCTGTGCTTGTGTCTTCGATTTTCCTTGCACCATGACCCCCAG
CAACTGCCAGGGATTGGGGGTGGGGCAGACGAGGACTGCGAAGGGAGGAT
GGGTGCCTGGACTGAGCCAGTGGCAGTGGATGAGCCTGGCACATGCAAG G
TGACTCTGAAACTGAGATGAGATTGGGTCAGACGGCGTGGAAGAGGAGGG
TTGGCTTTGGTTGTCTCCTTCATTCAAAGGGTTCGATAATTGCCAGGTGG
TTCTAGATGGTTTGGCGTGCTTTCCAGCTCAGACCTTGAAGCCCACAGGA
AGATTCCAGACAATGGAAAGCTTTCCCGCTAATGTGCGACTCTGCCTTCC
CTAGCCATGGCTTGCGTGCACTGTATTCACCTTCCCACCTACTCGCCATC
GTTGCAATACTTCATTCTCCATTAACCTTGAAAACCTACAACTCGTTTCC
TTGCCTCCACCCTGCCCCAGCTTTCCTTGTTCACGATCTTCCACCCCCAG
ACTTGCCCCACTTACCCTCAACACGTACCCGCTGTGTTTCATTGTTGGCA
GCGGCTTCTATGGATGGCGGGGGCGATGGGGAGGGATGAGGGACTAGGAA
GTCAGCAAGCCAGTCAAATGGGCACCGGGGTGGTGCTTCCTCTGTGGGTC
GTTGTGGTGAAGGAGGGGCTGCAGAGTCGCATTGAGCTGTACGGGGAATG
GTCCTTTACCAACCACCTTCCTCGCCGAGTACAG GTGGGGGGGGAAGGGT
AGGGCAGAGGGAAGACTGGTGTTTGCTGGGGGGGTACTCGAGAGACGTCA
ACGCAGAGCTAGAGCTCAAGCGGAGATATGCCGAGTGGCGTTCCGGCATG
CTTGAAGGTCGCATCAGTCAGTGCCCTTTCTTGCCTGCGTGGAATGGGTT
TTGCCGTGAGAAGCACGACTGAGACTGTGCTGTCGCTCGTGTTTTCCCTT
CTACCTGCCCAGCCCTGGTGCTGCAGCTCATCGGCAACCAACTTCATGAT
AACAGGATCGATACGTATATATATATATATATATATATATATATATATGT
ATGGGTTTTATGAGTGCAGAGCGATAACGGCATCAACTCTTGTCGAATTC
ACATCTTTTACGCTCGCCTTTTTTTTTTTTTCTGGAACTAACATCACCCC
CCCGTGTGTTTTCCCCCCTCCTCCTCTCCTTTTCCCGCCCGCACTCAAAT
TCAGGTGACCTGGTCCGTGGCAATCAGCCCCAGTGATAGCTTGCGCCGTC
AGTCCGATCCCCTGGGGACCAGGGGCACTCTCAAGCTCGGGCCCTCCGGC
AAGAACCAGGCTGACGACCAACGCGGCGGCGGCAGGCTCGCCAGCCGGTT
TGACCAGCGCAGCAGGGCCTCAGAAACTTCTGCTCTCAGCGCCTGCCTGG
GCCCAGGGAATGCGGCCAGCGGGGAAGGCTGGACCTCGGAGCTAATGCTT
GAATTCCGCGTGAGGGCGCTGAACAACCGCTCTGTAGCCGTGGGCTCCAT
CGGCCCCCCACCGGTGGCGACCCAGGGCTTCAATGATGAAGGCATTGGCC
ACGGGGCACGGGGGGGGAGGGGGGGAGCAGGGCGCAGGGGGGCGACCACG
GGGACGGGAGTGCGG GTGGGGGCGGCGTCTGGGGTTGGCGGCGGAAGCAG
GGGTGCCTTTGGAGCTGGCACGGAGACTGAGCAGGTCCCAGGGCTGGGTG
AGGCACATGTTCTCGGGGAAAGAACGTGGAGCATGACCCGCCAGTCAGAG
TGGGTAGAGGCTAGCCCTGGGGCTTACATTTCACTGATCGCATGCGCCAG
CGCAGACCCCGGGGTGACCAGCCTGTGGTTCTGGTGCGTGGCGGAGAGAG
AGTGGGTTTTGCTGGCGGACTGCGAGGCGTGTCGGTCTGGGGTGGGGGGC
CACCAGCGCCACCCAGGCCGGATGAGCATCAAGCTCCACCCCTTGGCGTT
GGTAACCAATCGCTGTACTCAGTCGCTGACAGCATGGCTTGGGGTGGATG
GGGGAGCGGGGGGCTCAGCGGGGGGGGGGGGGTGA back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10198:1981..4265+
>mRNA_D-mesarthrocarpus_Contig10198.3.1 ID=mRNA_D-mesarthrocarpus_Contig10198.3.1|Name=mRNA_D-mesarthrocarpus_Contig10198.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1353bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:1981..4265+ (Discosporangium mesarthrocarpum MT17_79) back to top